Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48499 * 109.46890 * 270.00331 * 3 2 1 5 5 H 1.48501 * 109.46707 * 30.00103 * 3 2 1 6 6 H 1.48497 * 109.47022 * 149.99820 * 3 2 1 7 7 C 1.37876 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00231 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47251 * 180.02562 * 9 7 2 11 11 O 1.42094 * 110.54344 * 68.38090 * 10 9 7 12 12 O 1.42095 * 110.54327 * 291.62679 * 10 9 7 13 13 C 1.76202 * 104.44815 * 180.02562 * 10 9 7 14 14 C 1.38231 * 120.01020 * 115.00132 * 13 10 9 15 15 C 1.38214 * 120.01873 * 180.02562 * 14 13 10 16 16 C 1.38265 * 120.02565 * 0.02562 * 15 14 13 17 17 C 1.38196 * 120.01248 * 359.97438 * 16 15 14 18 18 C 1.38334 * 120.00480 * 295.02146 * 13 10 9 19 19 Cl 1.73594 * 120.01427 * 359.95562 * 18 13 10 20 20 H 0.97003 * 119.99575 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46701 * 60.00529 * 9 7 2 22 22 H 1.08999 * 109.47529 * 300.00792 * 9 7 2 23 23 H 1.08001 * 119.99177 * 359.97438 * 14 13 10 24 24 H 1.07999 * 119.99303 * 180.02562 * 15 14 13 25 25 H 1.07999 * 119.99414 * 179.72574 * 16 15 14 26 26 H 1.08002 * 120.00635 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 8 3.1264 -3.9384 1.2364 12 8 3.1265 -3.9383 -1.2375 13 6 1.4184 -5.3209 -0.0013 14 6 1.4363 -6.1771 -1.0864 15 6 0.6427 -7.3087 -1.0874 16 6 -0.1699 -7.5848 -0.0034 17 6 -0.1887 -6.7297 1.0821 18 6 0.6061 -5.5969 1.0839 19 17 0.5836 -4.5225 2.4472 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5571 0.8896 23 1 2.0699 -5.9613 -1.9340 24 1 0.6573 -7.9776 -1.9352 25 1 -0.7931 -8.4669 -0.0066 26 1 -0.8232 -6.9456 1.9289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787338.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = -54.433309 kcal Electronic energy + Delta-G solvation = -15178.156208 eV Core-core repulsion = 12375.106302 eV Total energy + Delta-G solvation = -2803.049906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.006 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15148 -36.54106 -35.98727 -35.00387 -33.36245 -31.28049 -30.74382 -29.04743 -23.82086 -22.95074 -22.70907 -18.66305 -17.52667 -16.75025 -15.95669 -15.79854 -15.35024 -14.58187 -14.46595 -14.18196 -13.83703 -13.55250 -12.53430 -12.33988 -12.16488 -11.54422 -11.44884 -11.41864 -11.15666 -11.14759 -10.92988 -10.81366 -10.61781 -10.20205 -9.78433 -9.47674 -9.06623 -8.78221 -8.69341 -6.33280 -4.44153 0.75235 1.10935 1.16282 2.12859 3.22185 3.27505 3.33564 3.41301 3.81186 4.24521 4.55739 4.76419 4.81835 5.00260 5.05777 5.18706 5.47183 5.50187 5.76041 5.97989 6.06705 6.23229 6.67736 6.68800 6.74991 7.43221 7.73045 8.56797 9.22989 10.78309 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.030139 B = 0.007415 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.793336 B = 3775.390359 C = 4071.216173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.072 0.928 9 C -0.393 4.393 10 S 2.454 3.546 11 O -0.944 6.944 12 O -0.959 6.959 13 C -0.647 4.647 14 C -0.016 4.016 15 C -0.142 4.142 16 C -0.068 4.068 17 C -0.134 4.134 18 C 0.047 3.953 19 Cl -0.035 7.035 20 H 0.269 0.731 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.152 0.848 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 -12.515 0.252 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.128 4.128 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.090 0.910 9 C -0.529 4.529 10 S 2.636 3.364 11 O -0.941 6.941 12 O -0.957 6.957 13 C -0.729 4.729 14 C -0.035 4.035 15 C -0.160 4.160 16 C -0.087 4.087 17 C -0.153 4.153 18 C 0.019 3.981 19 Cl -0.006 7.006 20 H 0.079 0.921 21 H 0.106 0.894 22 H 0.114 0.886 23 H 0.169 0.831 24 H 0.152 0.848 25 H 0.153 0.847 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.175 -12.419 0.390 12.614 hybrid contribution -0.633 0.588 0.115 0.872 sum -2.808 -11.831 0.505 12.170 Atomic orbital electron populations 1.69958 1.06239 1.27749 1.47385 1.24903 0.95013 0.99470 0.93436 0.86362 0.80065 0.81717 0.78788 1.19856 1.20605 1.18996 1.20321 0.92860 0.88322 1.55805 0.90982 1.27517 1.09489 1.08264 1.07589 1.07156 0.78261 0.76345 0.74600 1.93504 1.70680 1.86083 1.43872 1.93436 1.71052 1.86453 1.44742 1.31229 1.17220 1.24261 1.00200 1.21059 0.95033 0.91657 0.95734 1.21365 0.97544 0.98012 0.99120 1.21336 0.96673 0.98125 0.92529 1.21155 1.00118 0.93935 1.00141 1.20597 0.95699 0.92850 0.88910 1.98463 1.97243 1.62408 1.42464 0.92142 0.89389 0.88587 0.83078 0.84768 0.84733 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 13.29 55.43 0.74 -23.84 15 2 C 0.08 2.14 5.46 -17.82 -0.10 2.04 15 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.53 -14.66 9.13 -34.44 -0.31 -14.97 15 8 H 0.07 1.93 7.71 -52.49 -0.40 1.53 15 9 C -0.39 -9.61 5.55 36.01 0.20 -9.41 15 10 S 2.45 54.45 4.51 -107.50 -0.48 53.96 15 11 O -0.94 -22.66 16.47 -57.54 -0.95 -23.60 15 12 O -0.96 -22.55 16.74 -57.54 -0.96 -23.51 15 13 C -0.65 -11.90 5.58 -39.55 -0.22 -12.12 15 14 C -0.02 -0.25 9.50 -39.59 -0.38 -0.63 15 15 C -0.14 -1.71 10.05 -39.58 -0.40 -2.11 15 16 C -0.07 -0.77 10.05 -39.59 -0.40 -1.17 15 17 C -0.13 -1.79 9.83 -39.55 -0.39 -2.18 15 18 C 0.05 0.80 6.29 -39.49 -0.25 0.56 15 19 Cl -0.04 -0.64 24.84 -51.86 -1.29 -1.93 15 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.09 2.12 8.14 -51.92 -0.42 1.69 15 22 H 0.10 2.33 6.30 -51.92 -0.33 2.00 15 23 H 0.15 2.22 7.21 -52.49 -0.38 1.84 15 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 25 H 0.13 1.00 8.06 -52.49 -0.42 0.58 15 26 H 0.14 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 259.97 15.07 3.92 3.92 Total: -1.00 -32.11 259.97 -8.23 -40.33 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -1.94 Total: -1.12 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: -2.24 Total: -39.99 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.74 Total: -23.84 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -1.91 Total: -47.11 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 54.45 SS G_CDS: -0.48 Total: 53.96 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.29 Total: -1.93 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.11 -8.23 -40.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787338.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.100 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds