Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48499 * 109.46890 * 270.00331 * 3 2 1 5 5 H 1.48501 * 109.46707 * 30.00103 * 3 2 1 6 6 H 1.48497 * 109.47022 * 149.99820 * 3 2 1 7 7 C 1.37876 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00231 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47251 * 180.02562 * 9 7 2 11 11 O 1.42094 * 110.54344 * 68.38090 * 10 9 7 12 12 O 1.42095 * 110.54327 * 291.62679 * 10 9 7 13 13 C 1.76202 * 104.44815 * 180.02562 * 10 9 7 14 14 C 1.38231 * 120.01020 * 115.00132 * 13 10 9 15 15 C 1.38214 * 120.01873 * 180.02562 * 14 13 10 16 16 C 1.38265 * 120.02565 * 0.02562 * 15 14 13 17 17 C 1.38196 * 120.01248 * 359.97438 * 16 15 14 18 18 C 1.38334 * 120.00480 * 295.02146 * 13 10 9 19 19 Cl 1.73594 * 120.01427 * 359.95562 * 18 13 10 20 20 H 0.97003 * 119.99575 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46701 * 60.00529 * 9 7 2 22 22 H 1.08999 * 109.47529 * 300.00792 * 9 7 2 23 23 H 1.08001 * 119.99177 * 359.97438 * 14 13 10 24 24 H 1.07999 * 119.99303 * 180.02562 * 15 14 13 25 25 H 1.07999 * 119.99414 * 179.72574 * 16 15 14 26 26 H 1.08002 * 120.00635 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 8 3.1264 -3.9384 1.2364 12 8 3.1265 -3.9383 -1.2375 13 6 1.4184 -5.3209 -0.0013 14 6 1.4363 -6.1771 -1.0864 15 6 0.6427 -7.3087 -1.0874 16 6 -0.1699 -7.5848 -0.0034 17 6 -0.1887 -6.7297 1.0821 18 6 0.6061 -5.5969 1.0839 19 17 0.5836 -4.5225 2.4472 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5571 0.8896 23 1 2.0699 -5.9613 -1.9340 24 1 0.6573 -7.9776 -1.9352 25 1 -0.7931 -8.4669 -0.0066 26 1 -0.8232 -6.9456 1.9289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787338.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = -76.725664 kcal Electronic energy + Delta-G solvation = -15179.122877 eV Core-core repulsion = 12375.106302 eV Total energy + Delta-G solvation = -2804.016575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.006 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27359 -38.09648 -37.55535 -36.84041 -35.41654 -32.42655 -31.86237 -31.04594 -25.70223 -24.27516 -23.84019 -20.17128 -19.23624 -18.53076 -17.45303 -17.19278 -17.08436 -16.18975 -15.91168 -15.66858 -14.95475 -14.87190 -14.44097 -14.11921 -13.47289 -13.36566 -13.01723 -12.98298 -12.80659 -12.61171 -12.57842 -12.50176 -12.34326 -11.85350 -11.54207 -11.10991 -10.76438 -10.44043 -9.92504 -8.40506 -6.58879 -0.72467 -0.32924 0.07412 0.86667 1.38958 1.40267 1.52371 2.13461 2.30677 2.37697 2.91288 2.95895 3.33665 3.73357 3.94295 4.19436 4.23343 4.36891 4.71778 4.72772 4.77869 4.91231 5.08893 5.22086 5.32621 5.69405 5.70405 6.49457 7.12063 8.72225 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.030139 B = 0.007415 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.793336 B = 3775.390359 C = 4071.216173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.566 4.566 8 H 0.066 0.934 9 C -0.407 4.407 10 S 2.476 3.524 11 O -0.971 6.971 12 O -0.982 6.982 13 C -0.668 4.668 14 C -0.034 4.034 15 C -0.128 4.128 16 C -0.046 4.046 17 C -0.131 4.131 18 C 0.023 3.977 19 Cl -0.061 7.061 20 H 0.275 0.725 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.152 0.848 24 H 0.179 0.821 25 H 0.189 0.811 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -14.739 -0.335 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.174 4.174 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.604 4.604 8 H 0.084 0.916 9 C -0.542 4.542 10 S 2.663 3.337 11 O -0.969 6.969 12 O -0.979 6.979 13 C -0.757 4.757 14 C -0.053 4.053 15 C -0.146 4.146 16 C -0.064 4.064 17 C -0.150 4.150 18 C -0.005 4.005 19 Cl -0.032 7.032 20 H 0.084 0.916 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.169 0.831 24 H 0.197 0.803 25 H 0.206 0.794 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.157 -14.578 -0.200 14.917 hybrid contribution -0.420 1.046 0.251 1.155 sum -3.577 -13.532 0.051 13.996 Atomic orbital electron populations 1.70033 1.07492 1.28924 1.47842 1.25796 0.95945 1.02908 0.92768 0.85469 0.78929 0.77651 0.79419 1.18688 1.19279 1.18722 1.20721 0.93056 0.90287 1.56376 0.91595 1.27553 1.10181 1.09467 1.06972 1.05812 0.77758 0.76587 0.73574 1.93459 1.71750 1.86825 1.44848 1.93393 1.71970 1.87129 1.45419 1.30444 1.19084 1.23299 1.02830 1.21315 0.96259 0.92827 0.94852 1.21893 0.95421 0.96601 1.00698 1.22011 0.95375 0.98475 0.90497 1.21628 0.99030 0.92408 1.01960 1.20850 0.97333 0.94245 0.88064 1.98449 1.97414 1.63668 1.43638 0.91624 0.90038 0.88972 0.83057 0.80323 0.79367 0.81453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.90 13.29 21.45 0.28 -51.62 15 2 C 0.03 1.64 5.46 84.65 0.46 2.10 15 3 Si 0.96 43.02 29.54 68.60 2.03 45.05 15 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.57 -32.30 9.13 25.60 0.23 -32.07 15 8 H 0.07 3.71 7.71 -2.91 -0.02 3.69 15 9 C -0.41 -20.93 5.55 71.24 0.40 -20.54 15 10 S 2.48 114.05 4.51 -56.49 -0.25 113.79 15 11 O -0.97 -48.57 16.47 -127.65 -2.10 -50.67 15 12 O -0.98 -47.71 16.74 -127.65 -2.14 -49.85 15 13 C -0.67 -24.46 5.58 22.29 0.12 -24.34 15 14 C -0.03 -0.99 9.50 22.26 0.21 -0.77 15 15 C -0.13 -2.47 10.05 22.27 0.22 -2.25 15 16 C -0.05 -0.77 10.05 22.27 0.22 -0.54 15 17 C -0.13 -3.02 9.83 22.29 0.22 -2.80 15 18 C 0.02 0.76 6.29 22.33 0.14 0.90 15 19 Cl -0.06 -2.26 24.84 -2.72 -0.07 -2.33 15 20 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 21 H 0.08 4.16 8.14 -2.39 -0.02 4.14 15 22 H 0.09 4.73 6.30 -2.39 -0.02 4.71 15 23 H 0.15 4.32 7.21 -2.91 -0.02 4.29 15 24 H 0.18 1.91 8.06 -2.91 -0.02 1.88 15 25 H 0.19 1.25 8.06 -2.91 -0.02 1.23 15 26 H 0.17 2.83 8.06 -2.91 -0.02 2.80 15 Total: -1.00 -72.53 259.97 1.19 -71.35 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.20 Total: 4.59 kcal Atomic # 6 Polarization: -82.54 SS G_CDS: 2.23 Total: -80.31 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.28 Total: -51.62 kcal Atomic # 8 Polarization: -96.28 SS G_CDS: -4.24 Total: -100.52 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 114.05 SS G_CDS: -0.25 Total: 113.79 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.33 kcal Total: -72.53 1.19 -71.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787338.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.378 kcal (2) G-P(sol) polarization free energy of solvation -72.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds