Wall clock time and date at job start Mon Mar 30 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47694 * 2 1 4 4 C 1.50705 * 109.47086 * 120.00181 * 2 1 3 5 5 H 1.08005 * 119.99924 * 119.99469 * 4 2 1 6 6 C 1.37875 * 119.99879 * 299.99659 * 4 2 1 7 7 N 1.31512 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00070 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47235 * 90.00025 * 8 6 4 10 10 H 1.48499 * 109.47372 * 210.00034 * 8 6 4 11 11 H 1.48503 * 109.46959 * 329.99828 * 8 6 4 12 12 C 1.50700 * 109.47068 * 239.99949 * 2 1 3 13 13 C 1.33361 * 125.19689 * 119.98357 * 12 2 1 14 14 C 1.38447 * 114.93148 * 179.81036 * 13 12 2 15 15 C 1.33478 * 114.89562 * 0.42732 * 14 13 12 16 16 Br 1.89100 * 125.21158 * 179.86097 * 15 14 13 17 17 S 1.75888 * 125.19111 * 300.02973 * 12 2 1 18 18 H 1.09000 * 109.46770 * 59.99333 * 1 2 3 19 19 H 1.09000 * 109.47694 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46609 * 300.00108 * 1 2 3 21 21 H 0.97003 * 119.99890 * 179.97438 * 7 6 4 22 22 H 1.08001 * 122.52758 * 0.06170 * 13 12 2 23 23 H 1.07999 * 122.55397 * 180.25295 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.6297 -0.5461 4.4124 10 1 1.3431 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7119 12 6 2.0323 -0.7104 -1.2305 13 6 2.8020 -0.1645 -2.1728 14 6 3.1433 -1.0136 -3.2118 15 6 2.6425 -2.2472 -3.1169 16 35 2.9192 -3.6357 -4.3705 17 16 1.6920 -2.3859 -1.6435 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.7082 1.1608 3.4844 22 1 3.1373 0.8611 -2.1268 23 1 3.7648 -0.7007 -4.0377 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084424296.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:20 Heat of formation + Delta-G solvation = 18.691894 kcal Electronic energy + Delta-G solvation = -10127.904290 eV Core-core repulsion = 8113.597644 eV Total energy + Delta-G solvation = -2014.306645 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.46886 -34.40242 -31.69937 -30.49995 -26.99601 -25.25217 -23.22226 -20.80214 -18.57246 -16.81373 -15.81380 -15.08154 -14.46493 -13.11532 -12.93905 -12.72143 -12.36534 -11.80512 -11.48292 -11.09811 -10.99926 -10.59091 -10.54223 -10.24956 -10.16225 -9.94619 -9.75941 -9.14575 -8.49535 -7.92204 -7.81835 -6.13391 -4.21754 1.44712 1.57412 2.32032 2.64569 3.23854 3.24903 3.31851 3.36748 4.34538 5.18318 5.60322 5.88221 6.05581 6.47614 6.65280 6.73953 6.86102 7.02220 7.08763 7.52693 7.72573 7.93152 8.19601 8.79942 9.44201 10.92181 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.046787 B = 0.006027 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.316102 B = 4644.508978 C = 4920.125046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.095 3.905 3 H 0.051 0.949 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.247 4.247 16 Br -0.023 7.023 17 S 0.151 5.849 18 H 0.014 0.986 19 H 0.030 0.970 20 H 0.091 0.909 21 H 0.263 0.737 22 H 0.139 0.861 23 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -5.948 -11.946 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 H 0.069 0.931 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 C -0.194 4.194 13 C -0.223 4.223 14 C -0.110 4.110 15 C -0.442 4.442 16 Br 0.061 6.939 17 S 0.413 5.587 18 H 0.033 0.967 19 H 0.049 0.951 20 H 0.110 0.890 21 H 0.073 0.927 22 H 0.157 0.843 23 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.678 -7.527 -11.611 13.939 hybrid contribution 1.171 1.033 0.419 1.617 sum 2.848 -6.494 -11.192 13.249 Atomic orbital electron populations 1.21856 0.96952 0.99640 1.00929 1.17681 0.93082 0.95329 0.86457 0.93147 1.21102 1.31987 1.12759 0.89652 0.92135 1.24937 0.94758 0.94929 0.99046 1.69868 1.36138 1.22722 1.23789 0.86524 0.78672 0.80207 0.82301 1.20498 1.21046 1.19683 1.25746 0.98152 0.95277 1.00225 1.19992 1.05070 1.01697 0.95563 1.20061 0.99786 0.91469 0.99713 1.25862 1.16196 0.98282 1.03882 1.96533 1.96308 1.46205 1.54885 1.84334 1.49298 1.12298 1.12734 0.96721 0.95108 0.89036 0.92679 0.84282 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.89 37.16 0.33 -2.82 14 2 C 0.09 2.29 2.68 -92.92 -0.25 2.04 14 3 H 0.05 1.29 8.08 -51.93 -0.42 0.87 14 4 C -0.52 -13.64 8.46 -34.44 -0.29 -13.93 14 5 H 0.06 1.61 7.74 -52.48 -0.41 1.20 14 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 14 7 N -0.89 -24.28 11.32 55.43 0.63 -23.65 14 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 14 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 14 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 11 H -0.27 -6.27 7.11 56.52 0.40 -5.86 14 12 C -0.07 -1.57 5.04 -36.01 -0.18 -1.75 14 13 C -0.19 -3.64 10.01 -41.21 -0.41 -4.05 14 14 C -0.08 -1.26 10.11 -41.17 -0.42 -1.68 14 15 C -0.25 -4.23 6.97 29.07 0.20 -4.03 14 16 Br -0.02 -0.32 34.07 -68.01 -2.32 -2.64 14 17 S 0.15 2.89 23.02 -107.50 -2.47 0.41 14 18 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 14 19 H 0.03 0.69 8.00 -51.93 -0.42 0.27 14 20 H 0.09 2.32 6.07 -51.93 -0.32 2.01 14 21 H 0.26 6.87 8.31 -40.82 -0.34 6.53 14 22 H 0.14 2.38 8.06 -52.49 -0.42 1.96 14 23 H 0.13 1.89 8.06 -52.49 -0.42 1.46 14 LS Contribution 239.18 15.07 3.60 3.60 Total: -1.00 -26.32 239.18 -8.65 -34.98 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: -1.96 Total: -3.84 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -1.11 Total: -24.58 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.63 Total: -23.65 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.47 Total: 0.41 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.32 Total: -2.64 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.32 -8.65 -34.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084424296.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.669 kcal (2) G-P(sol) polarization free energy of solvation -26.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds