Wall clock time and date at job start Mon Mar 30 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47694 * 2 1 4 4 C 1.50705 * 109.47086 * 120.00181 * 2 1 3 5 5 H 1.08005 * 119.99924 * 119.99469 * 4 2 1 6 6 C 1.37875 * 119.99879 * 299.99659 * 4 2 1 7 7 N 1.31512 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00070 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47235 * 90.00025 * 8 6 4 10 10 H 1.48499 * 109.47372 * 210.00034 * 8 6 4 11 11 H 1.48503 * 109.46959 * 329.99828 * 8 6 4 12 12 C 1.50700 * 109.47068 * 239.99949 * 2 1 3 13 13 C 1.33361 * 125.19689 * 119.98357 * 12 2 1 14 14 C 1.38447 * 114.93148 * 179.81036 * 13 12 2 15 15 C 1.33478 * 114.89562 * 0.42732 * 14 13 12 16 16 Br 1.89100 * 125.21158 * 179.86097 * 15 14 13 17 17 S 1.75888 * 125.19111 * 300.02973 * 12 2 1 18 18 H 1.09000 * 109.46770 * 59.99333 * 1 2 3 19 19 H 1.09000 * 109.47694 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46609 * 300.00108 * 1 2 3 21 21 H 0.97003 * 119.99890 * 179.97438 * 7 6 4 22 22 H 1.08001 * 122.52758 * 0.06170 * 13 12 2 23 23 H 1.07999 * 122.55397 * 180.25295 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.6297 -0.5461 4.4124 10 1 1.3431 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7119 12 6 2.0323 -0.7104 -1.2305 13 6 2.8020 -0.1645 -2.1728 14 6 3.1433 -1.0136 -3.2118 15 6 2.6425 -2.2472 -3.1169 16 35 2.9192 -3.6357 -4.3705 17 16 1.6920 -2.3859 -1.6435 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.7082 1.1608 3.4844 22 1 3.1373 0.8611 -2.1268 23 1 3.7648 -0.7007 -4.0377 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084424296.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:20 Heat of formation + Delta-G solvation = 5.921666 kcal Electronic energy + Delta-G solvation = -10128.458048 eV Core-core repulsion = 8113.597644 eV Total energy + Delta-G solvation = -2014.860404 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.95392 -36.22961 -33.38288 -32.06410 -28.52798 -27.25610 -24.73769 -22.55697 -20.05307 -18.63299 -17.56737 -16.68131 -16.16684 -14.86277 -14.59843 -14.32386 -13.76504 -13.48714 -13.14430 -12.89922 -12.84275 -12.33334 -12.24263 -11.96200 -11.70795 -11.51681 -11.20283 -11.03219 -10.51275 -9.39117 -9.30443 -8.14658 -6.29382 -0.00480 0.19532 0.93584 1.14652 1.41213 1.42950 1.52494 1.81192 2.41895 3.14039 4.16115 4.49343 4.58188 4.79175 4.98690 5.01800 5.15217 5.38070 5.43989 5.57406 5.78728 5.97330 6.23992 6.77243 7.39215 8.89773 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.046787 B = 0.006027 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.316102 B = 4644.508978 C = 4920.125046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.097 3.903 3 H 0.026 0.974 4 C -0.530 4.530 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.270 1.270 12 C -0.114 4.114 13 C -0.182 4.182 14 C -0.074 4.074 15 C -0.241 4.241 16 Br 0.011 6.989 17 S 0.134 5.866 18 H 0.031 0.969 19 H 0.030 0.970 20 H 0.066 0.934 21 H 0.264 0.736 22 H 0.151 0.849 23 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -6.799 -13.116 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.044 0.956 4 C -0.568 4.568 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.194 1.194 12 C -0.233 4.233 13 C -0.211 4.211 14 C -0.108 4.108 15 C -0.436 4.436 16 Br 0.094 6.906 17 S 0.397 5.603 18 H 0.050 0.950 19 H 0.049 0.951 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.169 0.831 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.537 -8.381 -12.785 15.496 hybrid contribution 0.938 1.253 0.650 1.695 sum 3.475 -7.128 -12.135 14.496 Atomic orbital electron populations 1.21696 0.96803 0.99401 1.00479 1.17440 0.93293 0.94166 0.87464 0.95643 1.21360 1.31803 1.12645 0.90982 0.92885 1.25651 0.95027 0.95620 1.01649 1.69978 1.37001 1.23774 1.24324 0.85639 0.78247 0.79171 0.79191 1.20066 1.20579 1.19441 1.25400 1.00903 0.96552 1.00452 1.20270 1.03237 1.02473 0.95092 1.20309 0.99772 0.90818 0.99922 1.26098 1.14752 0.99441 1.03327 1.96575 1.96060 1.44789 1.53161 1.84284 1.50319 1.11322 1.14423 0.94994 0.95126 0.91491 0.92637 0.83142 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.89 71.98 0.64 -5.29 14 2 C 0.10 4.73 2.68 -12.28 -0.03 4.69 14 3 H 0.03 1.35 8.08 -2.39 -0.02 1.33 14 4 C -0.53 -28.32 8.46 25.60 0.22 -28.11 14 5 H 0.05 2.85 7.74 -2.91 -0.02 2.82 14 6 C 0.02 1.08 5.30 84.65 0.45 1.53 14 7 N -0.91 -50.72 11.32 21.45 0.24 -50.47 14 8 Si 0.95 42.63 29.54 68.60 2.03 44.65 14 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 14 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 14 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 14 12 C -0.11 -4.76 5.04 24.58 0.12 -4.63 14 13 C -0.18 -6.49 10.01 21.22 0.21 -6.27 14 14 C -0.07 -2.27 10.11 21.24 0.21 -2.05 14 15 C -0.24 -7.65 6.97 66.74 0.47 -7.19 14 16 Br 0.01 0.28 34.07 -20.37 -0.69 -0.42 14 17 S 0.13 5.00 23.02 -56.49 -1.30 3.70 14 18 H 0.03 1.33 8.14 -2.39 -0.02 1.31 14 19 H 0.03 1.39 8.00 -2.39 -0.02 1.37 14 20 H 0.07 3.48 6.07 -2.39 -0.01 3.46 14 21 H 0.26 13.97 8.31 -92.71 -0.77 13.20 14 22 H 0.15 4.92 8.06 -2.91 -0.02 4.90 14 23 H 0.17 3.99 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -55.32 239.18 3.77 -51.55 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: 1.21 Total: -1.70 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 2.29 Total: -47.32 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.24 Total: -50.47 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.30 Total: 3.70 kcal Atomic # 35 Polarization: 0.28 SS G_CDS: -0.69 Total: -0.42 kcal Total: -55.32 3.77 -51.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084424296.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.472 kcal (2) G-P(sol) polarization free energy of solvation -55.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds