Wall clock time and date at job start Mon Mar 30 2020 06:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46729 * 2 1 4 4 C 1.52995 * 109.46820 * 119.99654 * 2 1 3 5 5 C 1.50699 * 109.47007 * 181.07297 * 4 2 1 6 6 C 1.38233 * 120.00335 * 274.51480 * 5 4 2 7 7 C 1.38236 * 120.00167 * 179.76898 * 6 5 4 8 8 C 1.38233 * 119.99753 * 0.49781 * 7 6 5 9 9 C 1.38238 * 120.00298 * 359.75802 * 8 7 6 10 10 C 1.38234 * 119.99709 * 359.97438 * 9 8 7 11 11 N 1.46895 * 109.47047 * 239.99818 * 2 1 3 12 12 C 1.46905 * 111.00139 * 89.35544 * 11 2 1 13 13 C 1.52996 * 109.47020 * 184.91009 * 12 11 2 14 14 C 1.50701 * 115.56037 * 90.42855 * 13 12 11 15 15 H 1.08001 * 120.00530 * 220.33677 * 14 13 12 16 16 C 1.37881 * 119.99706 * 40.34073 * 14 13 12 17 17 N 1.31516 * 120.00271 * 11.20868 * 16 14 13 18 18 Si 1.86802 * 119.99651 * 191.21071 * 16 14 13 19 19 H 1.48500 * 109.47411 * 354.99897 * 18 16 14 20 20 H 1.48502 * 109.47148 * 114.99758 * 18 16 14 21 21 H 1.48504 * 109.47216 * 234.99662 * 18 16 14 22 22 C 1.53001 * 117.50428 * 304.74105 * 13 12 11 23 23 C 1.53006 * 60.03025 * 252.49902 * 22 13 12 24 24 H 1.08997 * 109.47550 * 300.00575 * 1 2 3 25 25 H 1.09007 * 109.46895 * 60.00147 * 1 2 3 26 26 H 1.09002 * 109.47467 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47796 * 301.07360 * 4 2 1 28 28 H 1.08999 * 109.47276 * 61.07797 * 4 2 1 29 29 H 1.07997 * 119.99805 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.99997 * 180.22980 * 7 6 5 31 31 H 1.08006 * 119.99583 * 179.72432 * 8 7 6 32 32 H 1.07996 * 120.00236 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.99845 * 179.97438 * 10 9 8 34 34 H 1.00901 * 111.00574 * 325.40188 * 11 2 1 35 35 H 1.09002 * 109.46786 * 64.91260 * 12 11 2 36 36 H 1.08995 * 109.46687 * 304.91527 * 12 11 2 37 37 H 0.96995 * 119.99939 * 184.99778 * 17 16 14 38 38 H 1.09001 * 117.49472 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.50096 * 144.99570 * 22 13 12 40 40 H 1.08997 * 117.49494 * 107.50535 * 23 22 13 41 41 H 1.09002 * 117.49486 * 252.51550 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5467 -0.6982 1.2627 6 6 4.2589 -1.6697 0.5845 7 6 5.6410 -1.6458 0.5929 8 6 6.3110 -0.6564 1.2880 9 6 5.5988 0.3121 1.9705 10 6 4.2167 0.2914 1.9576 11 7 2.0197 -0.6925 -1.1994 12 6 2.1806 0.2443 -2.3194 13 6 2.5728 -0.5298 -3.5795 14 6 1.4261 -1.0018 -4.4359 15 1 1.4573 -1.9823 -4.8876 16 6 0.3371 -0.1818 -4.6427 17 7 0.3883 1.0825 -4.2840 18 14 -1.2110 -0.8666 -5.4325 19 1 -0.9735 -2.2716 -5.8509 20 1 -2.3268 -0.8237 -4.4535 21 1 -1.5637 -0.0491 -6.6211 22 6 3.8116 -1.4244 -3.5023 23 6 3.8625 -0.1147 -4.2917 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6610 -0.2186 2.1391 28 1 1.6925 -1.7542 1.2397 29 1 3.7355 -2.4454 0.0454 30 1 6.1974 -2.4026 0.0600 31 1 7.3909 -0.6404 1.2982 32 1 6.1222 1.0848 2.5139 33 1 3.6603 1.0478 2.4911 34 1 1.4092 -1.4554 -1.4511 35 1 2.9606 0.9669 -2.0794 36 1 1.2407 0.7684 -2.4926 37 1 -0.4007 1.6412 -4.3624 38 1 4.3470 -1.4617 -2.5535 39 1 3.7971 -2.3544 -4.0705 40 1 4.4318 0.7098 -3.8626 41 1 3.8812 -0.1832 -5.3794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:15 Heat of formation + Delta-G solvation = 37.802699 kcal Electronic energy + Delta-G solvation = -19657.053308 eV Core-core repulsion = 16922.900980 eV Total energy + Delta-G solvation = -2734.152329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.03092 -37.19538 -35.52482 -32.17084 -31.80053 -30.51570 -29.38389 -26.09445 -25.65607 -23.91048 -22.18264 -21.32250 -20.97770 -19.92635 -18.92056 -16.49870 -16.10568 -15.07379 -14.97997 -14.72858 -14.11002 -13.99437 -13.85570 -13.29145 -13.08319 -13.04477 -12.32755 -12.15416 -11.88247 -11.70035 -11.57760 -11.29753 -11.11075 -10.88421 -10.76479 -10.63801 -10.48212 -10.38675 -10.32290 -10.10694 -9.15860 -8.94768 -8.60078 -8.54833 -8.26351 -8.09732 -7.27272 -6.03649 -4.09761 1.72977 1.79871 3.22893 3.33119 3.37041 4.15916 4.36244 4.89789 5.07591 5.14287 5.22931 5.30364 5.41671 5.55993 5.66448 5.74058 5.79149 5.85133 5.91636 6.01840 6.14383 6.25432 6.26842 6.34346 6.44363 6.51110 6.61128 6.66050 6.73802 6.79756 6.88065 6.90853 7.04901 7.06820 7.15995 7.22721 7.39426 7.50708 7.66006 7.98961 8.18622 8.40793 8.51769 8.90552 9.49671 10.94819 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.006088 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.480618 B = 4598.156566 C = 5269.256940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 H 0.067 0.933 4 C -0.070 4.070 5 C -0.057 4.057 6 C -0.079 4.079 7 C -0.124 4.124 8 C -0.133 4.133 9 C -0.129 4.129 10 C -0.127 4.127 11 N -0.678 5.678 12 C 0.089 3.911 13 C 0.054 3.946 14 C -0.482 4.482 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.876 5.876 18 Si 0.885 3.115 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.285 1.285 22 C -0.192 4.192 23 C -0.203 4.203 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.338 0.662 35 H 0.031 0.969 36 H 0.087 0.913 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -2.195 12.046 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.108 4.108 5 C -0.057 4.057 6 C -0.097 4.097 7 C -0.142 4.142 8 C -0.151 4.151 9 C -0.147 4.147 10 C -0.145 4.145 11 N -0.308 5.308 12 C -0.039 4.039 13 C 0.053 3.947 14 C -0.520 4.520 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.514 5.514 18 Si 0.713 3.287 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.212 1.212 22 C -0.230 4.230 23 C -0.242 4.242 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.113 -1.963 12.159 13.335 hybrid contribution -1.631 0.025 -0.836 1.833 sum 3.482 -1.937 11.323 12.003 Atomic orbital electron populations 1.22475 0.97619 1.01736 1.01839 1.21403 0.91861 0.97559 0.91267 0.91423 1.20681 0.91209 1.01344 0.97553 1.19732 0.95533 0.94512 0.95920 1.21018 0.93351 0.98692 0.96633 1.21124 0.94850 0.98824 0.99438 1.21009 0.99238 0.95899 0.98996 1.20971 0.94249 0.98928 1.00549 1.20988 0.94277 0.98658 1.00616 1.60663 1.52893 1.12518 1.04693 1.21683 1.02039 0.92963 0.87226 1.18927 0.86422 0.95821 0.93542 1.20714 1.01721 1.00685 1.28852 0.92329 1.24947 0.98743 0.94273 0.95521 1.69956 1.28630 1.04666 1.48109 0.86644 0.83528 0.79349 0.79191 1.19688 1.20892 1.21157 1.22693 1.06683 0.93374 1.00207 1.22939 1.06792 0.96770 0.97656 0.93295 0.91878 0.92810 0.91837 0.91266 0.85717 0.86716 0.87023 0.86994 0.86942 0.84382 0.95098 0.89589 0.93103 0.90628 0.91553 0.92107 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 9.17 37.16 0.34 -2.43 16 2 C 0.09 1.47 2.64 -67.72 -0.18 1.29 16 3 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 4 C -0.07 -0.97 5.07 -27.89 -0.14 -1.11 16 5 C -0.06 -0.84 4.97 -104.62 -0.52 -1.36 16 6 C -0.08 -1.20 8.97 -39.58 -0.35 -1.55 16 7 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 8 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 9 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 10 C -0.13 -1.77 9.68 -39.58 -0.38 -2.16 16 11 N -0.68 -12.87 5.08 -106.73 -0.54 -13.42 16 12 C 0.09 2.04 5.22 -3.82 -0.02 2.02 16 13 C 0.05 1.31 1.86 -155.62 -0.29 1.02 16 14 C -0.48 -12.83 9.01 -34.44 -0.31 -13.14 16 15 H 0.06 1.58 7.84 -52.49 -0.41 1.17 16 16 C 0.07 1.77 5.16 -17.82 -0.09 1.68 16 17 N -0.88 -23.85 10.91 55.43 0.60 -23.24 16 18 Si 0.89 20.50 29.56 -169.99 -5.02 15.48 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 C -0.19 -4.26 9.73 -26.73 -0.26 -4.52 16 23 C -0.20 -4.81 9.88 -26.69 -0.26 -5.07 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 1.15 7.70 -51.92 -0.40 0.75 16 26 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 27 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 28 H 0.07 0.93 8.11 -51.93 -0.42 0.50 16 29 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.34 6.70 8.33 -39.29 -0.33 6.37 16 35 H 0.03 0.73 7.88 -51.93 -0.41 0.33 16 36 H 0.09 2.18 4.83 -51.93 -0.25 1.93 16 37 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.06 1.39 8.03 -51.93 -0.42 0.98 16 41 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -26.97 336.24 -10.38 -37.35 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.82 Total: 10.55 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -3.67 Total: -31.80 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.06 Total: -36.66 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.97 -10.38 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.153 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds