Wall clock time and date at job start Mon Mar 30 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46729 * 2 1 4 4 C 1.52995 * 109.46820 * 119.99654 * 2 1 3 5 5 C 1.50699 * 109.47007 * 181.07297 * 4 2 1 6 6 C 1.38233 * 120.00335 * 274.51480 * 5 4 2 7 7 C 1.38236 * 120.00167 * 179.76898 * 6 5 4 8 8 C 1.38233 * 119.99753 * 0.49781 * 7 6 5 9 9 C 1.38238 * 120.00298 * 359.75802 * 8 7 6 10 10 C 1.38234 * 119.99709 * 359.97438 * 9 8 7 11 11 N 1.46895 * 109.47047 * 239.99818 * 2 1 3 12 12 C 1.46905 * 111.00139 * 89.35544 * 11 2 1 13 13 C 1.52996 * 109.47020 * 184.91009 * 12 11 2 14 14 C 1.50701 * 115.56037 * 90.42855 * 13 12 11 15 15 H 1.08001 * 120.00530 * 220.33677 * 14 13 12 16 16 C 1.37881 * 119.99706 * 40.34073 * 14 13 12 17 17 N 1.31516 * 120.00271 * 11.20868 * 16 14 13 18 18 Si 1.86802 * 119.99651 * 191.21071 * 16 14 13 19 19 H 1.48500 * 109.47411 * 354.99897 * 18 16 14 20 20 H 1.48502 * 109.47148 * 114.99758 * 18 16 14 21 21 H 1.48504 * 109.47216 * 234.99662 * 18 16 14 22 22 C 1.53001 * 117.50428 * 304.74105 * 13 12 11 23 23 C 1.53006 * 60.03025 * 252.49902 * 22 13 12 24 24 H 1.08997 * 109.47550 * 300.00575 * 1 2 3 25 25 H 1.09007 * 109.46895 * 60.00147 * 1 2 3 26 26 H 1.09002 * 109.47467 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47796 * 301.07360 * 4 2 1 28 28 H 1.08999 * 109.47276 * 61.07797 * 4 2 1 29 29 H 1.07997 * 119.99805 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.99997 * 180.22980 * 7 6 5 31 31 H 1.08006 * 119.99583 * 179.72432 * 8 7 6 32 32 H 1.07996 * 120.00236 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.99845 * 179.97438 * 10 9 8 34 34 H 1.00901 * 111.00574 * 325.40188 * 11 2 1 35 35 H 1.09002 * 109.46786 * 64.91260 * 12 11 2 36 36 H 1.08995 * 109.46687 * 304.91527 * 12 11 2 37 37 H 0.96995 * 119.99939 * 184.99778 * 17 16 14 38 38 H 1.09001 * 117.49472 * 0.02562 * 22 13 12 39 39 H 1.09000 * 117.50096 * 144.99570 * 22 13 12 40 40 H 1.08997 * 117.49494 * 107.50535 * 23 22 13 41 41 H 1.09002 * 117.49486 * 252.51550 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5467 -0.6982 1.2627 6 6 4.2589 -1.6697 0.5845 7 6 5.6410 -1.6458 0.5929 8 6 6.3110 -0.6564 1.2880 9 6 5.5988 0.3121 1.9705 10 6 4.2167 0.2914 1.9576 11 7 2.0197 -0.6925 -1.1994 12 6 2.1806 0.2443 -2.3194 13 6 2.5728 -0.5298 -3.5795 14 6 1.4261 -1.0018 -4.4359 15 1 1.4573 -1.9823 -4.8876 16 6 0.3371 -0.1818 -4.6427 17 7 0.3883 1.0825 -4.2840 18 14 -1.2110 -0.8666 -5.4325 19 1 -0.9735 -2.2716 -5.8509 20 1 -2.3268 -0.8237 -4.4535 21 1 -1.5637 -0.0491 -6.6211 22 6 3.8116 -1.4244 -3.5023 23 6 3.8625 -0.1147 -4.2917 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6610 -0.2186 2.1391 28 1 1.6925 -1.7542 1.2397 29 1 3.7355 -2.4454 0.0454 30 1 6.1974 -2.4026 0.0600 31 1 7.3909 -0.6404 1.2982 32 1 6.1222 1.0848 2.5139 33 1 3.6603 1.0478 2.4911 34 1 1.4092 -1.4554 -1.4511 35 1 2.9606 0.9669 -2.0794 36 1 1.2407 0.7684 -2.4926 37 1 -0.4007 1.6412 -4.3624 38 1 4.3470 -1.4617 -2.5535 39 1 3.7971 -2.3544 -4.0705 40 1 4.4318 0.7098 -3.8626 41 1 3.8812 -0.1832 -5.3794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:14 Heat of formation + Delta-G solvation = 25.807342 kcal Electronic energy + Delta-G solvation = -19657.573466 eV Core-core repulsion = 16922.900980 eV Total energy + Delta-G solvation = -2734.672486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14239 -38.86672 -37.03895 -34.19496 -33.06130 -31.56374 -30.77762 -27.68027 -27.23870 -25.62625 -23.24397 -22.90635 -22.41384 -21.26403 -20.79330 -18.12479 -17.46833 -16.72121 -16.27138 -16.17096 -15.68679 -15.53698 -15.26408 -14.70648 -14.46274 -14.08393 -13.96579 -13.51492 -13.33787 -13.11328 -13.09892 -12.81652 -12.79050 -12.56376 -12.47766 -12.18618 -11.98670 -11.79048 -11.62764 -11.53327 -11.02850 -10.91006 -10.51692 -10.01652 -9.61571 -9.36143 -8.90669 -8.03408 -6.17700 0.66369 0.73118 1.38569 1.43609 1.53265 2.42356 3.01627 3.08135 3.46774 3.85065 3.99862 4.17252 4.26089 4.33070 4.38054 4.42948 4.50760 4.57781 4.70112 4.72400 4.82899 4.83820 4.91511 4.98679 5.02119 5.04408 5.13552 5.17564 5.29385 5.31997 5.34860 5.40801 5.45343 5.63723 5.64881 5.75137 5.81464 5.99799 6.06745 6.34261 6.45462 6.56518 6.73405 6.94877 7.43964 8.91905 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.006088 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.480618 B = 4598.156566 C = 5269.256940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 H 0.052 0.948 4 C -0.060 4.060 5 C -0.073 4.073 6 C -0.097 4.097 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.134 4.134 10 C -0.137 4.137 11 N -0.667 5.667 12 C 0.106 3.894 13 C 0.032 3.968 14 C -0.500 4.500 15 H 0.049 0.951 16 C 0.029 3.971 17 N -0.898 5.898 18 Si 0.945 3.055 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.287 1.287 22 C -0.165 4.165 23 C -0.211 4.211 24 H 0.074 0.926 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.334 0.666 35 H 0.015 0.985 36 H 0.061 0.939 37 H 0.260 0.740 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 -2.612 13.354 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 H 0.070 0.930 4 C -0.098 4.098 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.152 4.152 10 C -0.155 4.155 11 N -0.297 5.297 12 C -0.022 4.022 13 C 0.031 3.969 14 C -0.538 4.538 15 H 0.067 0.933 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.771 3.229 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.214 1.214 22 C -0.202 4.202 23 C -0.250 4.250 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.196 -2.387 13.478 14.640 hybrid contribution -1.591 0.184 -1.227 2.017 sum 3.605 -2.203 12.251 12.959 Atomic orbital electron populations 1.22377 0.96880 1.02142 1.01473 1.21458 0.92440 0.96875 0.91162 0.92964 1.20598 0.90879 1.01547 0.96745 1.19887 0.95967 0.94944 0.96487 1.21088 0.94008 0.99034 0.97352 1.21361 0.94741 0.99578 0.99851 1.21338 1.00546 0.95457 0.98381 1.21328 0.94259 0.99339 1.00300 1.21273 0.94940 0.98737 1.00569 1.60633 1.53219 1.11698 1.04161 1.21311 0.99960 0.92937 0.88038 1.19050 0.86508 0.97222 0.94114 1.20894 1.02984 1.00396 1.29500 0.93252 1.25554 1.01147 0.94417 0.95973 1.70070 1.29242 1.05504 1.48853 0.85713 0.80346 0.78597 0.78228 1.19435 1.20178 1.21360 1.22613 1.04778 0.92667 1.00169 1.22931 1.06786 0.97996 0.97290 0.90670 0.95137 0.91987 0.89525 0.90698 0.86542 0.85621 0.84830 0.84638 0.85338 0.84835 0.96655 0.92092 0.93084 0.89506 0.91176 0.91739 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 9.17 71.98 0.66 -4.47 16 2 C 0.09 2.91 2.64 44.92 0.12 3.03 16 3 H 0.05 1.83 7.79 -2.39 -0.02 1.82 16 4 C -0.06 -1.55 5.07 29.85 0.15 -1.40 16 5 C -0.07 -2.05 4.97 -19.87 -0.10 -2.15 16 6 C -0.10 -2.85 8.97 22.27 0.20 -2.65 16 7 C -0.14 -3.73 10.05 22.27 0.22 -3.50 16 8 C -0.14 -3.44 10.05 22.27 0.22 -3.22 16 9 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 10 C -0.14 -3.55 9.68 22.27 0.22 -3.34 16 11 N -0.67 -25.30 5.08 -491.58 -2.50 -27.80 16 12 C 0.11 4.95 5.22 86.30 0.45 5.40 16 13 C 0.03 1.56 1.86 -52.90 -0.10 1.46 16 14 C -0.50 -26.81 9.01 25.60 0.23 -26.58 16 15 H 0.05 2.67 7.84 -2.91 -0.02 2.65 16 16 C 0.03 1.53 5.16 84.66 0.44 1.97 16 17 N -0.90 -49.56 10.91 21.45 0.23 -49.33 16 18 Si 0.95 42.21 29.56 68.60 2.03 44.24 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 C -0.16 -7.22 9.73 30.60 0.30 -6.92 16 23 C -0.21 -10.06 9.88 30.62 0.30 -9.76 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.03 1.10 7.70 -2.38 -0.02 1.09 16 26 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 27 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 28 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 29 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 30 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.33 13.20 8.33 -89.69 -0.75 12.46 16 35 H 0.01 0.73 7.88 -2.39 -0.02 0.72 16 36 H 0.06 3.18 4.83 -2.39 -0.01 3.17 16 37 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 38 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.06 2.97 8.03 -2.39 -0.02 2.95 16 41 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -57.14 336.24 3.54 -53.60 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.24 Total: 34.45 kcal Atomic # 6 Polarization: -58.69 SS G_CDS: 3.54 Total: -55.15 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -2.27 Total: -77.13 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -57.14 3.54 -53.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.406 kcal (2) G-P(sol) polarization free energy of solvation -57.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds