Wall clock time and date at job start Mon Mar 30 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47214 * 2 1 4 4 C 1.52997 * 109.47320 * 240.00188 * 2 1 3 5 5 C 1.50705 * 109.47091 * 176.32911 * 4 2 1 6 6 C 1.38237 * 119.99914 * 96.07926 * 5 4 2 7 7 C 1.38231 * 119.99704 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00447 * 359.97139 * 7 6 5 9 9 C 1.38234 * 119.99965 * 0.28207 * 8 7 6 10 10 C 1.38239 * 120.00012 * 359.52947 * 9 8 7 11 11 N 1.46896 * 109.47445 * 120.00096 * 2 1 3 12 12 C 1.46901 * 111.00069 * 277.39724 * 11 2 1 13 13 C 1.52999 * 109.47080 * 174.72985 * 12 11 2 14 14 C 1.50702 * 115.55241 * 38.88963 * 13 12 11 15 15 H 1.07993 * 119.99830 * 267.58853 * 14 13 12 16 16 C 1.37876 * 119.99892 * 87.58549 * 14 13 12 17 17 N 1.31510 * 120.00053 * 179.17340 * 16 14 13 18 18 Si 1.86803 * 120.00088 * 359.17950 * 16 14 13 19 19 H 1.48493 * 109.47310 * 91.36875 * 18 16 14 20 20 H 1.48503 * 109.46885 * 211.37456 * 18 16 14 21 21 H 1.48507 * 109.46952 * 331.36643 * 18 16 14 22 22 C 1.53009 * 117.49845 * 253.18043 * 13 12 11 23 23 C 1.53002 * 59.99931 * 252.51002 * 22 13 12 24 24 H 1.09003 * 109.47043 * 60.00068 * 1 2 3 25 25 H 1.09001 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47491 * 299.99913 * 1 2 3 27 27 H 1.09003 * 109.47425 * 56.33124 * 4 2 1 28 28 H 1.09001 * 109.47120 * 296.33205 * 4 2 1 29 29 H 1.08000 * 119.99596 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.99317 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.00267 * 180.02562 * 8 7 6 32 32 H 1.07997 * 120.00414 * 179.72488 * 9 8 7 33 33 H 1.07995 * 120.00732 * 180.23616 * 10 9 8 34 34 H 1.00892 * 111.00255 * 153.43886 * 11 2 1 35 35 H 1.08998 * 109.46787 * 294.73115 * 12 11 2 36 36 H 1.09005 * 109.47108 * 54.73152 * 12 11 2 37 37 H 0.96995 * 120.00294 * 180.02562 * 17 16 14 38 38 H 1.08997 * 117.49512 * 0.02562 * 22 13 12 39 39 H 1.09002 * 117.49470 * 145.02109 * 22 13 12 40 40 H 1.09000 * 117.49986 * 252.50689 * 23 22 13 41 41 H 1.09005 * 117.51756 * 107.48188 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5444 -0.6429 -1.2955 6 6 4.3062 -1.6888 -0.8092 7 6 5.6860 -1.6171 -0.8521 8 6 6.3040 -0.4999 -1.3819 9 6 5.5422 0.5483 -1.8634 10 6 4.1623 0.4751 -1.8241 11 7 2.0197 -0.6925 1.1994 12 6 2.0288 0.2077 2.3602 13 6 2.4176 -0.5797 3.6131 14 6 3.4935 -1.6173 3.4209 15 1 3.2246 -2.6376 3.1909 16 6 4.8210 -1.2639 3.5387 17 7 5.7593 -2.1727 3.3871 18 14 5.2867 0.5058 3.9139 19 1 5.3948 0.6883 5.3836 20 1 6.5918 0.8195 3.2786 21 1 4.2435 1.4165 3.3773 22 6 1.3126 -0.8863 4.6261 23 6 2.3805 0.1598 4.9521 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6241 -0.2467 -2.1380 28 1 1.7314 -1.7661 -1.2170 29 1 3.8233 -2.5619 -0.3957 30 1 6.2812 -2.4342 -0.4718 31 1 7.3820 -0.4441 -1.4158 32 1 6.0250 1.4231 -2.2732 33 1 3.5671 1.2923 -2.2037 34 1 2.9346 -1.0872 1.0408 35 1 2.7512 1.0069 2.1945 36 1 1.0360 0.6373 2.4946 37 1 6.6932 -1.9243 3.4704 38 1 0.3086 -0.5274 4.3996 39 1 1.3636 -1.8388 5.1535 40 1 3.1339 -0.1044 5.6941 41 1 2.0794 1.2074 4.9403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:18 Heat of formation + Delta-G solvation = 40.306341 kcal Electronic energy + Delta-G solvation = -19953.969393 eV Core-core repulsion = 17219.925631 eV Total energy + Delta-G solvation = -2734.043762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.15812 -37.38518 -35.74826 -32.01565 -31.82162 -30.52437 -29.78804 -26.24821 -25.69919 -24.18356 -22.24289 -21.52917 -21.18257 -19.72757 -18.82180 -16.45296 -16.16277 -15.41598 -15.01889 -14.80491 -14.75139 -14.09990 -13.68063 -13.38388 -13.01998 -12.81479 -12.65580 -12.32719 -12.07579 -11.90609 -11.69011 -11.56878 -11.30124 -11.00964 -10.80812 -10.60948 -10.43184 -10.34790 -10.29771 -9.95054 -9.43560 -8.92587 -8.56803 -8.49718 -8.37854 -8.30918 -7.44629 -6.04534 -4.04248 1.71487 1.79380 3.31786 3.41278 3.46541 4.15366 4.47774 4.76783 5.04671 5.11545 5.22739 5.27667 5.34935 5.38552 5.48323 5.69613 5.71517 5.82808 5.88738 5.95476 6.02963 6.09159 6.13989 6.20379 6.27242 6.34836 6.42216 6.45579 6.48805 6.56239 6.58384 6.70827 6.81351 6.83790 6.93379 7.01649 7.13287 7.22912 7.39294 7.83629 8.00774 8.41056 8.63614 9.02435 9.60276 11.06870 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.009677 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.372254 B = 2892.864342 C = 4019.623524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.032 0.968 4 C -0.080 4.080 5 C -0.088 4.088 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.129 4.129 9 C -0.126 4.126 10 C -0.125 4.125 11 N -0.670 5.670 12 C 0.097 3.903 13 C 0.010 3.990 14 C -0.473 4.473 15 H 0.080 0.920 16 C 0.080 3.920 17 N -0.896 5.896 18 Si 0.870 3.130 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.259 1.259 22 C -0.175 4.175 23 C -0.210 4.210 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.361 0.639 35 H 0.018 0.982 36 H 0.046 0.954 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 5.017 -9.925 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.050 0.950 4 C -0.117 4.117 5 C -0.088 4.088 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.147 4.147 9 C -0.144 4.144 10 C -0.143 4.143 11 N -0.306 5.306 12 C -0.033 4.033 13 C 0.009 3.991 14 C -0.511 4.511 15 H 0.098 0.902 16 C -0.122 4.122 17 N -0.534 5.534 18 Si 0.699 3.301 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.184 1.184 22 C -0.212 4.212 23 C -0.248 4.248 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.185 0.815 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.775 4.703 -9.784 11.859 hybrid contribution 1.276 1.685 0.274 2.132 sum -3.499 6.388 -9.510 11.979 Atomic orbital electron populations 1.21780 0.95161 1.02084 1.00397 1.21466 0.95219 0.95551 0.90533 0.95035 1.20784 0.90826 1.02368 0.97761 1.19928 0.95740 0.94511 0.98623 1.21170 0.93903 0.98836 0.97870 1.21204 0.95021 0.98241 0.97523 1.21107 0.99553 0.94328 0.99678 1.21022 0.93991 0.98487 1.00926 1.20924 0.94579 0.97636 1.01153 1.60482 1.34552 1.33899 1.01644 1.21607 0.97340 0.92905 0.91434 1.19388 0.97080 0.96981 0.85687 1.20218 0.87948 0.95211 1.47693 0.90215 1.24904 0.96404 0.96431 0.94475 1.69880 1.00151 1.33180 1.50157 0.87012 0.77537 0.87038 0.78544 1.20722 1.22375 1.18392 1.22784 0.92911 0.99062 1.06477 1.22974 1.03159 0.95405 1.03224 0.93482 0.92013 0.92953 0.91049 0.90145 0.85373 0.85831 0.86646 0.86766 0.86783 0.81542 0.96435 0.93568 0.92859 0.91216 0.89846 0.89697 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.39 37.16 0.35 -1.56 16 2 C 0.08 1.35 2.65 -67.72 -0.18 1.17 16 3 H 0.03 0.54 7.89 -51.93 -0.41 0.13 16 4 C -0.08 -1.15 4.99 -27.88 -0.14 -1.29 16 5 C -0.09 -1.42 4.63 -104.62 -0.48 -1.90 16 6 C -0.10 -1.75 8.11 -39.58 -0.32 -2.08 16 7 C -0.10 -1.77 10.05 -39.59 -0.40 -2.17 16 8 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 9 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 10 C -0.12 -1.89 9.73 -39.58 -0.38 -2.28 16 11 N -0.67 -13.46 6.05 -106.73 -0.65 -14.10 16 12 C 0.10 2.07 5.42 -3.82 -0.02 2.05 16 13 C 0.01 0.23 1.22 -155.65 -0.19 0.04 16 14 C -0.47 -12.84 8.05 -34.44 -0.28 -13.11 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 17 N -0.90 -26.27 13.96 55.43 0.77 -25.50 16 18 Si 0.87 21.97 25.07 -169.99 -4.26 17.71 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 21 H -0.26 -6.35 5.35 56.52 0.30 -6.04 16 22 C -0.18 -3.70 9.88 -26.73 -0.26 -3.97 16 23 C -0.21 -4.62 7.56 -26.73 -0.20 -4.83 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.76 7.23 -51.93 -0.38 0.38 16 27 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 28 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 29 H 0.13 2.28 7.97 -52.49 -0.42 1.87 16 30 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.36 7.92 5.00 -39.30 -0.20 7.73 16 35 H 0.02 0.40 6.42 -51.93 -0.33 0.07 16 36 H 0.05 0.91 6.96 -51.93 -0.36 0.55 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.08 1.97 7.17 -51.93 -0.37 1.59 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -28.90 325.93 -9.39 -38.29 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.77 Total: 11.21 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: -3.40 Total: -32.52 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.13 Total: -39.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.26 Total: 17.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.90 -9.39 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.596 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds