Wall clock time and date at job start Mon Mar 30 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47214 * 2 1 4 4 C 1.52997 * 109.47320 * 240.00188 * 2 1 3 5 5 C 1.50705 * 109.47091 * 176.32911 * 4 2 1 6 6 C 1.38237 * 119.99914 * 96.07926 * 5 4 2 7 7 C 1.38231 * 119.99704 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00447 * 359.97139 * 7 6 5 9 9 C 1.38234 * 119.99965 * 0.28207 * 8 7 6 10 10 C 1.38239 * 120.00012 * 359.52947 * 9 8 7 11 11 N 1.46896 * 109.47445 * 120.00096 * 2 1 3 12 12 C 1.46901 * 111.00069 * 277.39724 * 11 2 1 13 13 C 1.52999 * 109.47080 * 174.72985 * 12 11 2 14 14 C 1.50702 * 115.55241 * 38.88963 * 13 12 11 15 15 H 1.07993 * 119.99830 * 267.58853 * 14 13 12 16 16 C 1.37876 * 119.99892 * 87.58549 * 14 13 12 17 17 N 1.31510 * 120.00053 * 179.17340 * 16 14 13 18 18 Si 1.86803 * 120.00088 * 359.17950 * 16 14 13 19 19 H 1.48493 * 109.47310 * 91.36875 * 18 16 14 20 20 H 1.48503 * 109.46885 * 211.37456 * 18 16 14 21 21 H 1.48507 * 109.46952 * 331.36643 * 18 16 14 22 22 C 1.53009 * 117.49845 * 253.18043 * 13 12 11 23 23 C 1.53002 * 59.99931 * 252.51002 * 22 13 12 24 24 H 1.09003 * 109.47043 * 60.00068 * 1 2 3 25 25 H 1.09001 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47491 * 299.99913 * 1 2 3 27 27 H 1.09003 * 109.47425 * 56.33124 * 4 2 1 28 28 H 1.09001 * 109.47120 * 296.33205 * 4 2 1 29 29 H 1.08000 * 119.99596 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.99317 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.00267 * 180.02562 * 8 7 6 32 32 H 1.07997 * 120.00414 * 179.72488 * 9 8 7 33 33 H 1.07995 * 120.00732 * 180.23616 * 10 9 8 34 34 H 1.00892 * 111.00255 * 153.43886 * 11 2 1 35 35 H 1.08998 * 109.46787 * 294.73115 * 12 11 2 36 36 H 1.09005 * 109.47108 * 54.73152 * 12 11 2 37 37 H 0.96995 * 120.00294 * 180.02562 * 17 16 14 38 38 H 1.08997 * 117.49512 * 0.02562 * 22 13 12 39 39 H 1.09002 * 117.49470 * 145.02109 * 22 13 12 40 40 H 1.09000 * 117.49986 * 252.50689 * 23 22 13 41 41 H 1.09005 * 117.51756 * 107.48188 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5444 -0.6429 -1.2955 6 6 4.3062 -1.6888 -0.8092 7 6 5.6860 -1.6171 -0.8521 8 6 6.3040 -0.4999 -1.3819 9 6 5.5422 0.5483 -1.8634 10 6 4.1623 0.4751 -1.8241 11 7 2.0197 -0.6925 1.1994 12 6 2.0288 0.2077 2.3602 13 6 2.4176 -0.5797 3.6131 14 6 3.4935 -1.6173 3.4209 15 1 3.2246 -2.6376 3.1909 16 6 4.8210 -1.2639 3.5387 17 7 5.7593 -2.1727 3.3871 18 14 5.2867 0.5058 3.9139 19 1 5.3948 0.6883 5.3836 20 1 6.5918 0.8195 3.2786 21 1 4.2435 1.4165 3.3773 22 6 1.3126 -0.8863 4.6261 23 6 2.3805 0.1598 4.9521 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6241 -0.2467 -2.1380 28 1 1.7314 -1.7661 -1.2170 29 1 3.8233 -2.5619 -0.3957 30 1 6.2812 -2.4342 -0.4718 31 1 7.3820 -0.4441 -1.4158 32 1 6.0250 1.4231 -2.2732 33 1 3.5671 1.2923 -2.2037 34 1 2.9346 -1.0872 1.0408 35 1 2.7512 1.0069 2.1945 36 1 1.0360 0.6373 2.4946 37 1 6.6932 -1.9243 3.4704 38 1 0.3086 -0.5274 4.3996 39 1 1.3636 -1.8388 5.1535 40 1 3.1339 -0.1044 5.6941 41 1 2.0794 1.2074 4.9403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:18 Heat of formation + Delta-G solvation = 24.418926 kcal Electronic energy + Delta-G solvation = -19954.658323 eV Core-core repulsion = 17219.925631 eV Total energy + Delta-G solvation = -2734.732692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41252 -39.03862 -37.18718 -34.15914 -33.17884 -31.76264 -31.09780 -27.74707 -27.40787 -25.82417 -23.48968 -23.25703 -22.43650 -21.06856 -20.66370 -18.17134 -17.65370 -16.92339 -16.67184 -16.30452 -16.08593 -15.57254 -15.27589 -14.79838 -14.74128 -14.25152 -14.21456 -13.96358 -13.40575 -13.28799 -13.07444 -12.92009 -12.77691 -12.58254 -12.47990 -12.08662 -11.90412 -11.87569 -11.74735 -11.57325 -11.30438 -10.87038 -10.57553 -10.20911 -9.78406 -9.55663 -9.00214 -8.22156 -6.23863 0.47079 0.53454 1.30021 1.34557 1.44413 2.37783 2.89699 3.11391 3.18229 3.60087 3.86034 4.01387 4.13591 4.17110 4.23523 4.28955 4.40735 4.45269 4.53977 4.58783 4.63543 4.69296 4.73673 4.87451 4.88643 4.89679 5.02773 5.05556 5.12158 5.13716 5.19703 5.28497 5.37501 5.50522 5.51907 5.58940 5.67093 5.76242 5.80508 6.16112 6.37883 6.55376 6.74775 6.85715 7.42367 8.92596 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.009677 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.372254 B = 2892.864342 C = 4019.623524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.080 3.920 3 H 0.031 0.969 4 C -0.074 4.074 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.138 4.138 9 C -0.126 4.126 10 C -0.127 4.127 11 N -0.683 5.683 12 C 0.106 3.894 13 C -0.019 4.019 14 C -0.462 4.462 15 H 0.034 0.966 16 C 0.034 3.966 17 N -0.938 5.938 18 Si 0.920 3.080 19 H -0.276 1.276 20 H -0.303 1.303 21 H -0.241 1.241 22 C -0.160 4.160 23 C -0.205 4.205 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.346 0.654 35 H 0.003 0.997 36 H 0.070 0.930 37 H 0.260 0.740 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 8.066 -10.863 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.049 0.951 4 C -0.111 4.111 5 C -0.094 4.094 6 C -0.140 4.140 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.144 4.144 10 C -0.144 4.144 11 N -0.318 5.318 12 C -0.024 4.024 13 C -0.020 4.020 14 C -0.500 4.500 15 H 0.053 0.947 16 C -0.164 4.164 17 N -0.578 5.578 18 Si 0.747 3.253 19 H -0.202 1.202 20 H -0.231 1.231 21 H -0.165 1.165 22 C -0.197 4.197 23 C -0.242 4.242 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.021 0.979 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.561 7.759 -10.720 14.771 hybrid contribution 1.787 0.639 0.543 1.974 sum -4.774 8.398 -10.177 14.031 Atomic orbital electron populations 1.21739 0.93072 1.02221 1.01750 1.21627 0.96710 0.95131 0.89472 0.95083 1.20795 0.89712 1.02300 0.98328 1.20144 0.96677 0.94328 0.98289 1.21150 0.94263 0.99326 0.99247 1.21292 0.95232 0.99120 0.98984 1.21381 1.00772 0.94051 0.99435 1.21440 0.94171 0.98927 0.99846 1.21314 0.95086 0.97794 1.00243 1.60524 1.33625 1.34476 1.03133 1.21489 0.97983 0.92174 0.90755 1.19408 0.97506 0.97477 0.87596 1.20228 0.89213 0.94302 1.46251 0.94747 1.25515 0.96402 0.99698 0.94773 1.70010 1.00388 1.35096 1.52266 0.86193 0.77248 0.83356 0.78477 1.20183 1.23105 1.16466 1.22819 0.93887 0.98601 1.04357 1.22993 1.03000 0.97025 1.01219 0.90408 0.92492 0.93317 0.87726 0.90744 0.87358 0.87086 0.84886 0.83542 0.83774 0.83241 0.97918 0.91202 0.93057 0.88079 0.90863 0.91261 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.39 71.98 0.68 -2.52 16 2 C 0.08 2.42 2.65 44.92 0.12 2.54 16 3 H 0.03 0.95 7.89 -2.39 -0.02 0.94 16 4 C -0.07 -1.99 4.99 29.85 0.15 -1.84 16 5 C -0.09 -2.96 4.63 -19.86 -0.09 -3.05 16 6 C -0.12 -4.48 8.11 22.27 0.18 -4.30 16 7 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 8 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 9 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 10 C -0.13 -3.50 9.73 22.27 0.22 -3.29 16 11 N -0.68 -26.93 6.05 -491.57 -2.97 -29.90 16 12 C 0.11 4.32 5.42 86.30 0.47 4.78 16 13 C -0.02 -0.86 1.22 -52.92 -0.06 -0.93 16 14 C -0.46 -25.76 8.05 25.60 0.21 -25.56 16 15 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 16 C 0.03 1.95 5.47 84.66 0.46 2.41 16 17 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 18 Si 0.92 45.31 25.07 68.60 1.72 47.03 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 21 H -0.24 -11.09 5.35 99.48 0.53 -10.56 16 22 C -0.16 -6.41 9.88 30.60 0.30 -6.11 16 23 C -0.20 -8.52 7.56 30.60 0.23 -8.29 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.23 7.23 -2.39 -0.02 1.21 16 27 H 0.10 2.12 8.12 -2.39 -0.02 2.10 16 28 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16 29 H 0.11 4.25 7.97 -2.91 -0.02 4.23 16 30 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.35 15.49 5.00 -89.70 -0.45 15.05 16 35 H 0.00 0.12 6.42 -2.39 -0.02 0.11 16 36 H 0.07 2.50 6.96 -2.38 -0.02 2.49 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.10 3.44 8.08 -2.39 -0.02 3.42 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.07 3.10 7.17 -2.39 -0.02 3.08 16 41 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 Total: -1.00 -64.06 325.93 2.94 -61.12 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.37 Total: 36.80 kcal Atomic # 6 Polarization: -61.53 SS G_CDS: 3.53 Total: -58.00 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.68 Total: -86.95 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.72 Total: 47.03 kcal Total: -64.06 2.94 -61.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.539 kcal (2) G-P(sol) polarization free energy of solvation -64.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds