Wall clock time and date at job start Mon Mar 30 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47346 * 2 1 4 4 C 1.46906 * 110.99892 * 292.31757 * 3 2 1 5 5 C 1.53002 * 109.47174 * 160.12934 * 4 3 2 6 6 C 1.50698 * 115.54904 * 279.20444 * 5 4 3 7 7 H 1.07996 * 119.99747 * 115.32151 * 6 5 4 8 8 C 1.37879 * 120.00066 * 295.31615 * 6 5 4 9 9 N 1.31516 * 119.99921 * 5.64076 * 8 6 5 10 10 Si 1.86795 * 119.99942 * 185.63679 * 8 6 5 11 11 H 1.48506 * 109.47094 * 60.00226 * 10 8 6 12 12 H 1.48501 * 109.46801 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47357 * 300.00277 * 10 8 6 14 14 C 1.52999 * 117.49640 * 133.49711 * 5 4 3 15 15 C 1.53004 * 117.49699 * 64.87423 * 5 4 3 16 16 C 1.39670 * 111.00410 * 168.35802 * 3 2 1 17 17 C 1.38931 * 120.07053 * 63.95080 * 16 3 2 18 18 C 1.38085 * 119.92301 * 179.97438 * 17 16 3 19 19 C 1.38295 * 120.07686 * 0.02562 * 18 17 16 20 20 C 1.38271 * 120.15164 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.06958 * 0.02562 * 20 19 18 22 22 C 1.50705 * 120.03494 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47445 * 186.08622 * 1 2 3 24 24 H 1.09002 * 109.47098 * 306.08758 * 1 2 3 25 25 H 1.09002 * 109.47294 * 66.08103 * 1 2 3 26 26 H 1.08994 * 109.46709 * 239.99742 * 2 1 3 27 27 H 1.08998 * 109.46872 * 120.00105 * 2 1 3 28 28 H 1.09005 * 109.46685 * 280.12874 * 4 3 2 29 29 H 1.08992 * 109.47074 * 40.12655 * 4 3 2 30 30 H 0.96992 * 119.99993 * 184.99992 * 9 8 6 31 31 H 1.09005 * 117.50045 * 359.97438 * 14 5 4 32 32 H 1.08996 * 117.50124 * 145.02263 * 14 5 4 33 33 H 1.08997 * 117.49572 * 214.97603 * 15 5 4 34 34 H 1.08995 * 117.50009 * 359.97438 * 15 5 4 35 35 H 1.07999 * 120.03836 * 0.02562 * 17 16 3 36 36 H 1.08002 * 119.95871 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.93019 * 180.02562 * 19 18 17 38 38 H 1.07993 * 119.96357 * 179.72466 * 20 19 18 39 39 H 1.09000 * 109.47330 * 89.99564 * 22 21 20 40 40 H 1.09004 * 109.46638 * 209.99690 * 22 21 20 41 41 H 1.09003 * 109.46575 * 329.99426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7042 2.0549 -1.2688 5 6 1.7633 3.5712 -1.0733 6 6 0.5396 4.1948 -0.4532 7 1 0.6062 4.6664 0.5161 8 6 -0.6650 4.1633 -1.1233 9 7 -0.7732 3.4943 -2.2504 10 14 -2.1433 5.0708 -0.4302 11 1 -1.8300 6.5185 -0.3233 12 1 -3.3076 4.8821 -1.3325 13 1 -2.4674 4.5338 0.9158 14 6 2.5197 4.3896 -2.1217 15 6 3.1212 4.1868 -0.7295 16 6 3.3907 1.4312 0.2631 17 6 4.2899 0.8551 -0.6255 18 6 5.6446 0.9030 -0.3626 19 6 6.1066 1.5232 0.7839 20 6 5.2145 2.0976 1.6705 21 6 3.8580 2.0532 1.4136 22 6 2.8864 2.6800 2.3801 23 1 -0.3634 -1.0219 0.1090 24 1 -0.3633 0.6053 0.8305 25 1 -0.3634 0.4167 -0.9394 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.4292 1.7577 -2.0266 29 1 0.7032 1.7689 -1.5915 30 1 -1.5983 3.5312 -2.7590 31 1 2.9755 3.8478 -2.9504 32 1 2.1322 5.3794 -2.3631 33 1 3.1294 5.0431 -0.0552 34 1 3.9723 3.5115 -0.6422 35 1 3.9298 0.3710 -1.5213 36 1 6.3442 0.4557 -1.0532 37 1 7.1667 1.5596 0.9870 38 1 5.5783 2.5771 2.5671 39 1 2.7195 3.7211 2.1038 40 1 1.9406 2.1390 2.3466 41 1 3.2963 2.6330 3.3890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:04 Heat of formation + Delta-G solvation = 56.598500 kcal Electronic energy + Delta-G solvation = -20481.802555 eV Core-core repulsion = 17748.465274 eV Total energy + Delta-G solvation = -2733.337281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75180 -36.87500 -35.20647 -32.24871 -31.92728 -30.72503 -28.47932 -26.41794 -25.49855 -24.78762 -22.45527 -21.03253 -20.80818 -20.12968 -18.83898 -16.71064 -15.84740 -15.09697 -14.94354 -14.54703 -14.28004 -13.91242 -13.65502 -13.37735 -12.89916 -12.76189 -12.61181 -11.84712 -11.69192 -11.58847 -11.30165 -11.28377 -11.05792 -10.94446 -10.86388 -10.71357 -10.64158 -10.42380 -10.18620 -9.98107 -9.41622 -8.69663 -8.48145 -8.38236 -8.09898 -7.83573 -7.52005 -5.95782 -3.96727 1.76010 1.82000 3.35505 3.39972 3.43354 4.16022 4.47196 4.51844 5.27494 5.29103 5.30281 5.40730 5.51827 5.65215 5.71829 5.78563 5.92765 5.99219 6.07960 6.17770 6.25887 6.30307 6.35713 6.40747 6.48409 6.55485 6.64104 6.72494 6.81948 6.86666 6.86991 6.90679 6.93473 7.03046 7.14116 7.18815 7.36790 7.48526 7.72691 7.94694 8.00880 8.23792 8.59322 9.01229 9.65423 11.13140 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.007625 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.202585 B = 3671.014375 C = 3919.156967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 N -0.491 5.491 4 C 0.099 3.901 5 C 0.069 3.931 6 C -0.466 4.466 7 H 0.057 0.943 8 C 0.069 3.931 9 N -0.888 5.888 10 Si 0.885 3.115 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.277 1.277 14 C -0.188 4.188 15 C -0.203 4.203 16 C 0.121 3.879 17 C -0.155 4.155 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.053 4.053 22 C -0.102 4.102 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.003 0.997 29 H 0.108 0.892 30 H 0.259 0.741 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.128 -6.103 4.876 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 N -0.212 5.212 4 C -0.025 4.025 5 C 0.068 3.932 6 C -0.504 4.504 7 H 0.075 0.925 8 C -0.132 4.132 9 N -0.527 5.527 10 Si 0.713 3.287 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.227 4.227 15 C -0.240 4.240 16 C 0.027 3.973 17 C -0.175 4.175 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.054 4.054 22 C -0.158 4.158 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.021 0.979 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.669 -5.967 5.130 10.988 hybrid contribution -0.246 0.197 -0.621 0.696 sum 7.423 -5.769 4.509 10.427 Atomic orbital electron populations 1.21771 0.94474 1.00104 1.03943 1.21995 0.96428 0.88672 0.99301 1.59621 1.09736 1.14566 1.37247 1.21967 1.01215 0.94724 0.84641 1.18698 0.89291 0.89070 0.96120 1.20377 0.91566 1.34812 1.03646 0.92517 1.24884 0.97994 0.94971 0.95338 1.69897 1.27144 1.40442 1.15182 0.86780 0.82529 0.80431 0.78959 1.20547 1.21500 1.20247 1.22810 1.06623 1.02143 0.91110 1.22909 0.99146 1.03211 0.98728 1.18778 0.89379 0.95661 0.93492 1.21675 0.94076 1.01754 0.99981 1.20853 0.95098 1.00807 0.97525 1.20954 0.98936 0.99999 0.95270 1.20926 0.92708 1.00864 0.99750 1.19847 0.93644 0.96601 0.95276 1.20630 0.98648 1.01671 0.94881 0.93554 0.91578 0.91542 0.95819 0.92044 0.97908 0.87370 0.93149 0.92379 0.90610 0.91180 0.91194 0.86953 0.87064 0.86917 0.86560 0.90711 0.90156 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.78 37.16 0.36 -2.15 16 2 C 0.06 1.09 5.30 -3.82 -0.02 1.07 16 3 N -0.49 -9.69 3.36 -171.11 -0.57 -10.27 16 4 C 0.10 2.26 4.67 -3.82 -0.02 2.24 16 5 C 0.07 1.68 1.59 -155.66 -0.25 1.43 16 6 C -0.47 -12.40 8.84 -34.44 -0.30 -12.71 16 7 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 8 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 9 N -0.89 -24.34 11.87 55.43 0.66 -23.69 16 10 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C -0.19 -4.48 9.88 -26.73 -0.26 -4.75 16 15 C -0.20 -4.53 8.59 -26.73 -0.23 -4.76 16 16 C 0.12 2.22 2.55 -83.79 -0.21 2.01 16 17 C -0.15 -2.64 8.15 -39.38 -0.32 -2.96 16 18 C -0.12 -1.85 10.04 -39.62 -0.40 -2.25 16 19 C -0.13 -1.88 10.04 -39.55 -0.40 -2.28 16 20 C -0.12 -1.86 9.70 -39.61 -0.38 -2.24 16 21 C -0.05 -0.91 4.55 -104.42 -0.47 -1.38 16 22 C -0.10 -1.70 9.77 36.01 0.35 -1.35 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.30 6.55 -51.93 -0.34 0.96 16 26 H 0.02 0.40 7.72 -51.93 -0.40 0.00 16 27 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 28 H 0.00 0.06 6.50 -51.93 -0.34 -0.27 16 29 H 0.11 2.69 4.60 -51.93 -0.24 2.45 16 30 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 31 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 32 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 33 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.07 1.51 5.57 -51.93 -0.29 1.22 16 35 H 0.11 1.89 7.19 -52.49 -0.38 1.51 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.45 7.46 -51.93 -0.39 1.06 16 41 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -27.27 325.72 -9.24 -36.50 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.56 Total: 4.92 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -2.65 Total: -28.32 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.08 Total: -33.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.27 -9.24 -36.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.103 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds