Wall clock time and date at job start Mon Mar 30 2020 06:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47346 * 2 1 4 4 C 1.46906 * 110.99892 * 292.31757 * 3 2 1 5 5 C 1.53002 * 109.47174 * 160.12934 * 4 3 2 6 6 C 1.50698 * 115.54904 * 279.20444 * 5 4 3 7 7 H 1.07996 * 119.99747 * 115.32151 * 6 5 4 8 8 C 1.37879 * 120.00066 * 295.31615 * 6 5 4 9 9 N 1.31516 * 119.99921 * 5.64076 * 8 6 5 10 10 Si 1.86795 * 119.99942 * 185.63679 * 8 6 5 11 11 H 1.48506 * 109.47094 * 60.00226 * 10 8 6 12 12 H 1.48501 * 109.46801 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47357 * 300.00277 * 10 8 6 14 14 C 1.52999 * 117.49640 * 133.49711 * 5 4 3 15 15 C 1.53004 * 117.49699 * 64.87423 * 5 4 3 16 16 C 1.39670 * 111.00410 * 168.35802 * 3 2 1 17 17 C 1.38931 * 120.07053 * 63.95080 * 16 3 2 18 18 C 1.38085 * 119.92301 * 179.97438 * 17 16 3 19 19 C 1.38295 * 120.07686 * 0.02562 * 18 17 16 20 20 C 1.38271 * 120.15164 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.06958 * 0.02562 * 20 19 18 22 22 C 1.50705 * 120.03494 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47445 * 186.08622 * 1 2 3 24 24 H 1.09002 * 109.47098 * 306.08758 * 1 2 3 25 25 H 1.09002 * 109.47294 * 66.08103 * 1 2 3 26 26 H 1.08994 * 109.46709 * 239.99742 * 2 1 3 27 27 H 1.08998 * 109.46872 * 120.00105 * 2 1 3 28 28 H 1.09005 * 109.46685 * 280.12874 * 4 3 2 29 29 H 1.08992 * 109.47074 * 40.12655 * 4 3 2 30 30 H 0.96992 * 119.99993 * 184.99992 * 9 8 6 31 31 H 1.09005 * 117.50045 * 359.97438 * 14 5 4 32 32 H 1.08996 * 117.50124 * 145.02263 * 14 5 4 33 33 H 1.08997 * 117.49572 * 214.97603 * 15 5 4 34 34 H 1.08995 * 117.50009 * 359.97438 * 15 5 4 35 35 H 1.07999 * 120.03836 * 0.02562 * 17 16 3 36 36 H 1.08002 * 119.95871 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.93019 * 180.02562 * 19 18 17 38 38 H 1.07993 * 119.96357 * 179.72466 * 20 19 18 39 39 H 1.09000 * 109.47330 * 89.99564 * 22 21 20 40 40 H 1.09004 * 109.46638 * 209.99690 * 22 21 20 41 41 H 1.09003 * 109.46575 * 329.99426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7042 2.0549 -1.2688 5 6 1.7633 3.5712 -1.0733 6 6 0.5396 4.1948 -0.4532 7 1 0.6062 4.6664 0.5161 8 6 -0.6650 4.1633 -1.1233 9 7 -0.7732 3.4943 -2.2504 10 14 -2.1433 5.0708 -0.4302 11 1 -1.8300 6.5185 -0.3233 12 1 -3.3076 4.8821 -1.3325 13 1 -2.4674 4.5338 0.9158 14 6 2.5197 4.3896 -2.1217 15 6 3.1212 4.1868 -0.7295 16 6 3.3907 1.4312 0.2631 17 6 4.2899 0.8551 -0.6255 18 6 5.6446 0.9030 -0.3626 19 6 6.1066 1.5232 0.7839 20 6 5.2145 2.0976 1.6705 21 6 3.8580 2.0532 1.4136 22 6 2.8864 2.6800 2.3801 23 1 -0.3634 -1.0219 0.1090 24 1 -0.3633 0.6053 0.8305 25 1 -0.3634 0.4167 -0.9394 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.4292 1.7577 -2.0266 29 1 0.7032 1.7689 -1.5915 30 1 -1.5983 3.5312 -2.7590 31 1 2.9755 3.8478 -2.9504 32 1 2.1322 5.3794 -2.3631 33 1 3.1294 5.0431 -0.0552 34 1 3.9723 3.5115 -0.6422 35 1 3.9298 0.3710 -1.5213 36 1 6.3442 0.4557 -1.0532 37 1 7.1667 1.5596 0.9870 38 1 5.5783 2.5771 2.5671 39 1 2.7195 3.7211 2.1038 40 1 1.9406 2.1390 2.3466 41 1 3.2963 2.6330 3.3890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:03 Heat of formation + Delta-G solvation = 44.634517 kcal Electronic energy + Delta-G solvation = -20482.321352 eV Core-core repulsion = 17748.465274 eV Total energy + Delta-G solvation = -2733.856079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12482 -38.43541 -36.83526 -33.99176 -33.47045 -32.06897 -29.90071 -27.97509 -27.22811 -26.44950 -23.78914 -22.85343 -22.15311 -21.56349 -20.64391 -18.31012 -17.46554 -16.60586 -16.39353 -16.26201 -15.81427 -15.50310 -15.06243 -14.96419 -14.54566 -14.19371 -13.84690 -13.50926 -13.12048 -13.10368 -12.90993 -12.82105 -12.71306 -12.60096 -12.50758 -12.34100 -12.07917 -11.98519 -11.89979 -11.57278 -11.29441 -10.65018 -10.45217 -9.95737 -9.58074 -9.22599 -9.01858 -8.01191 -6.07290 0.53545 0.60288 1.45058 1.45779 1.52262 2.49204 2.93309 3.03398 3.25964 3.71247 4.08877 4.15312 4.18335 4.28889 4.31582 4.43036 4.55382 4.59676 4.66127 4.73079 4.74533 4.82087 4.85577 4.95253 5.00032 5.01189 5.07437 5.14781 5.15509 5.19660 5.32564 5.45820 5.54848 5.59709 5.65577 5.69208 5.75741 5.88836 6.03802 6.14341 6.34890 6.51832 6.84534 6.94344 7.56638 9.06320 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.007625 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.202585 B = 3671.014375 C = 3919.156967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.064 3.936 3 N -0.498 5.498 4 C 0.116 3.884 5 C 0.053 3.947 6 C -0.479 4.479 7 H 0.046 0.954 8 C 0.030 3.970 9 N -0.908 5.908 10 Si 0.939 3.061 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.274 1.274 14 C -0.197 4.197 15 C -0.174 4.174 16 C 0.095 3.905 17 C -0.169 4.169 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.071 4.071 22 C -0.095 4.095 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.028 0.972 27 H 0.078 0.922 28 H -0.004 1.004 29 H 0.082 0.918 30 H 0.257 0.743 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.950 -6.589 6.071 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 N -0.219 5.219 4 C -0.010 4.010 5 C 0.052 3.948 6 C -0.517 4.517 7 H 0.064 0.936 8 C -0.169 4.169 9 N -0.548 5.548 10 Si 0.766 3.234 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.236 4.236 15 C -0.211 4.211 16 C 0.001 3.999 17 C -0.189 4.189 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.140 4.140 21 C -0.072 4.072 22 C -0.151 4.151 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.014 0.986 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.499 -6.454 6.335 13.115 hybrid contribution -0.727 0.318 -0.964 1.249 sum 8.772 -6.136 5.371 11.976 Atomic orbital electron populations 1.21688 0.94696 1.01479 1.01540 1.22044 0.96168 0.87862 1.00198 1.59505 1.11453 1.15634 1.35296 1.21586 0.99486 0.93958 0.86014 1.18756 0.89477 0.90015 0.96570 1.20552 0.92819 1.34941 1.03341 0.93626 1.25459 1.00094 0.95657 0.95676 1.70009 1.27539 1.41172 1.16034 0.85924 0.79833 0.79304 0.78385 1.20383 1.21247 1.19935 1.22788 1.07286 1.01509 0.91988 1.22772 0.98486 1.02633 0.97235 1.18886 0.88608 0.97591 0.94790 1.21720 0.95161 1.02295 0.99742 1.21189 0.94451 1.00243 0.98274 1.21374 1.00629 0.98195 0.94175 1.21256 0.91723 1.00284 1.00785 1.19988 0.94843 0.97182 0.95161 1.20527 0.98079 0.99911 0.96617 0.90373 0.93177 0.94449 0.95415 0.90366 0.98600 0.90026 0.93338 0.91811 0.91927 0.91397 0.90060 0.87673 0.84512 0.83407 0.83952 0.92820 0.92247 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.78 71.98 0.70 -4.07 16 2 C 0.06 2.20 5.30 86.30 0.46 2.66 16 3 N -0.50 -19.86 3.36 -695.27 -2.33 -22.19 16 4 C 0.12 5.37 4.67 86.30 0.40 5.78 16 5 C 0.05 2.60 1.59 -52.93 -0.08 2.52 16 6 C -0.48 -26.01 8.84 25.60 0.23 -25.79 16 7 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 8 C 0.03 1.65 5.39 84.65 0.46 2.10 16 9 N -0.91 -50.97 11.87 21.45 0.25 -50.71 16 10 Si 0.94 43.59 29.54 68.60 2.03 45.62 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 C -0.20 -9.49 9.88 30.60 0.30 -9.19 16 15 C -0.17 -7.75 8.59 30.60 0.26 -7.49 16 16 C 0.10 3.41 2.55 38.21 0.10 3.51 16 17 C -0.17 -5.52 8.15 22.40 0.18 -5.34 16 18 C -0.12 -3.27 10.04 22.25 0.22 -3.05 16 19 C -0.13 -3.02 10.04 22.29 0.22 -2.80 16 20 C -0.12 -3.24 9.70 22.25 0.22 -3.02 16 21 C -0.07 -2.31 4.55 -19.73 -0.09 -2.40 16 22 C -0.09 -3.10 9.77 71.24 0.70 -2.40 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.51 6.55 -2.39 -0.02 1.49 16 26 H 0.03 0.93 7.72 -2.39 -0.02 0.91 16 27 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 28 H 0.00 -0.19 6.50 -2.38 -0.02 -0.21 16 29 H 0.08 4.23 4.60 -2.39 -0.01 4.22 16 30 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 31 H 0.06 2.94 8.08 -2.38 -0.02 2.92 16 32 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.08 3.43 5.57 -2.39 -0.01 3.42 16 35 H 0.11 3.50 7.19 -2.91 -0.02 3.48 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.06 2.16 7.46 -2.38 -0.02 2.14 16 41 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 Total: -1.00 -58.98 325.72 5.21 -53.76 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.99 Total: 22.51 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 4.28 Total: -48.99 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -2.08 Total: -72.91 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -58.98 5.21 -53.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.399 kcal (2) G-P(sol) polarization free energy of solvation -58.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds