Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47592 * 2 1 4 4 C 1.46500 * 120.00541 * 274.33494 * 3 2 1 5 5 C 1.53004 * 109.46887 * 275.80770 * 4 3 2 6 6 C 1.50691 * 115.55057 * 294.95529 * 5 4 3 7 7 H 1.08003 * 120.00395 * 94.76671 * 6 5 4 8 8 C 1.37884 * 120.00132 * 274.77009 * 6 5 4 9 9 N 1.31513 * 119.99538 * 5.07213 * 8 6 5 10 10 Si 1.86801 * 119.99990 * 185.07531 * 8 6 5 11 11 H 1.48497 * 109.47371 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46874 * 119.99981 * 10 8 6 13 13 H 1.48498 * 109.46642 * 239.99907 * 10 8 6 14 14 C 1.53003 * 117.49948 * 149.28155 * 5 4 3 15 15 C 1.53000 * 117.49855 * 80.62366 * 5 4 3 16 16 C 1.39682 * 120.00066 * 94.33028 * 3 2 1 17 17 C 1.38933 * 120.07542 * 174.58513 * 16 3 2 18 18 C 1.38076 * 119.92066 * 179.97438 * 17 16 3 19 19 C 1.38311 * 120.07906 * 0.02562 * 18 17 16 20 20 C 1.38259 * 120.14766 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.96412 * 180.02562 * 20 19 18 22 22 C 1.38132 * 120.07620 * 0.29327 * 20 19 18 23 23 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46589 * 299.99560 * 1 2 3 25 25 H 1.08996 * 109.47350 * 59.99089 * 1 2 3 26 26 H 1.09004 * 109.46589 * 240.00440 * 2 1 3 27 27 H 1.08996 * 109.47350 * 120.00911 * 2 1 3 28 28 H 1.08998 * 109.47122 * 35.80205 * 4 3 2 29 29 H 1.08992 * 109.47729 * 155.80821 * 4 3 2 30 30 H 0.96997 * 119.99710 * 184.99750 * 9 8 6 31 31 H 1.08998 * 117.49760 * 0.02562 * 14 5 4 32 32 H 1.09000 * 117.49557 * 145.02077 * 14 5 4 33 33 H 1.08995 * 117.50450 * 214.97587 * 15 5 4 34 34 H 1.09005 * 117.50030 * 359.97438 * 15 5 4 35 35 H 1.07994 * 120.03943 * 359.97438 * 17 16 3 36 36 H 1.08005 * 119.95942 * 179.97438 * 18 17 16 37 37 H 1.07996 * 119.92352 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47414 * 89.99468 * 21 20 19 39 39 H 1.08998 * 109.47300 * 209.99981 * 21 20 19 40 40 H 1.09005 * 109.46918 * 329.99685 * 21 20 19 41 41 H 1.08001 * 120.03565 * 179.72670 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1722 2.1038 -1.2650 5 6 3.5276 1.7609 -1.8866 6 6 4.7341 2.2139 -1.1057 7 1 5.2193 1.5355 -0.4195 8 6 5.2187 3.4947 -1.2670 9 7 4.5711 4.3520 -2.0253 10 14 6.7951 4.0118 -0.4085 11 1 7.3265 2.8712 0.3801 12 1 7.7988 4.4234 -1.4225 13 1 6.5128 5.1521 0.4999 14 6 3.6284 1.7743 -3.4133 15 6 3.6386 0.4436 -2.6569 16 6 2.3374 2.0091 1.2062 17 6 2.9060 3.2767 1.2021 18 6 3.2196 3.8948 2.3964 19 6 2.9687 3.2532 3.5957 20 6 2.4029 1.9917 3.6034 21 6 2.1308 1.2967 4.9125 22 6 2.0918 1.3653 2.4122 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.3749 1.8129 -1.9489 29 1 2.1186 3.1765 -1.0796 30 1 4.9486 5.2288 -2.1974 31 1 2.7292 2.0279 -3.9748 32 1 4.5675 2.1106 -3.8527 33 1 4.5843 -0.0952 -2.5992 34 1 2.7461 -0.1790 -2.7205 35 1 3.1026 3.7781 0.2660 36 1 3.6620 4.8800 2.3939 37 1 3.2153 3.7388 4.5283 38 1 1.1280 1.5498 5.2567 39 1 2.2060 0.2182 4.7739 40 1 2.8616 1.6196 5.6540 41 1 1.6539 0.3781 2.4188 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = 48.984771 kcal Electronic energy + Delta-G solvation = -20138.341239 eV Core-core repulsion = 17404.673801 eV Total energy + Delta-G solvation = -2733.667437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.08617 -37.03295 -35.11573 -32.29565 -31.81910 -30.43880 -29.04382 -26.23019 -25.71122 -24.86495 -22.74900 -21.16167 -20.68599 -19.95430 -18.71574 -16.55281 -16.04618 -15.17343 -14.67031 -14.59854 -14.12912 -13.88977 -13.72322 -13.28326 -13.05671 -12.80102 -12.53701 -12.33826 -11.94799 -11.72102 -11.47167 -11.40384 -11.10295 -10.97505 -10.75482 -10.69032 -10.56347 -10.45524 -10.20191 -9.95315 -9.81140 -8.91533 -8.78108 -8.36970 -8.11819 -7.94378 -6.38068 -6.02626 -4.03847 2.21792 2.41128 3.30315 3.39543 3.45322 3.93926 4.44742 4.66433 5.26964 5.32346 5.36520 5.42146 5.48304 5.64570 5.74033 5.77483 5.88892 5.91496 6.03437 6.07875 6.10862 6.16428 6.22716 6.25825 6.39838 6.45591 6.53120 6.59006 6.66494 6.71796 6.81935 6.90835 7.07925 7.25691 7.29783 7.40724 7.50145 7.53892 7.71865 7.91162 8.21765 8.42971 8.50066 8.95466 9.59548 11.05847 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.010000 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.995605 B = 2799.420017 C = 4171.670412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.607 5.607 4 C 0.163 3.837 5 C 0.030 3.970 6 C -0.471 4.471 7 H 0.055 0.945 8 C 0.075 3.925 9 N -0.883 5.883 10 Si 0.877 3.123 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.282 1.282 14 C -0.155 4.155 15 C -0.212 4.212 16 C 0.240 3.760 17 C -0.165 4.165 18 C -0.084 4.084 19 C -0.194 4.194 20 C -0.059 4.059 21 C -0.106 4.106 22 C -0.214 4.214 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.259 0.741 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.148 0.852 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 -5.043 6.290 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.314 5.314 4 C 0.040 3.960 5 C 0.028 3.972 6 C -0.509 4.509 7 H 0.073 0.927 8 C -0.127 4.127 9 N -0.520 5.520 10 Si 0.705 3.295 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.208 1.208 14 C -0.193 4.193 15 C -0.249 4.249 16 C 0.137 3.863 17 C -0.187 4.187 18 C -0.103 4.103 19 C -0.214 4.214 20 C -0.060 4.060 21 C -0.163 4.163 22 C -0.237 4.237 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.717 -4.922 6.089 10.316 hybrid contribution 1.072 0.330 0.236 1.147 sum -5.644 -4.592 6.325 9.641 Atomic orbital electron populations 1.22237 0.97523 1.00954 1.02115 1.21270 0.92853 0.84075 1.02204 1.46483 1.69121 1.12099 1.03740 1.21085 0.95263 0.96771 0.82847 1.19345 0.94232 0.93499 0.90086 1.20328 1.10562 0.96679 1.23351 0.92669 1.24835 0.96471 0.96136 0.95275 1.69999 1.37033 1.06678 1.38328 0.86759 0.84218 0.78886 0.79675 1.19786 1.21251 1.20787 1.22493 1.00501 0.99083 0.97236 1.22975 0.99781 0.91631 1.10496 1.17766 0.91515 0.91633 0.85409 1.21193 1.02569 0.95317 0.99600 1.20825 0.98239 0.98934 0.92292 1.20550 1.07424 0.96227 0.97224 1.19401 0.98102 0.94500 0.94007 1.20694 1.01144 0.99710 0.94758 1.20380 1.11302 1.00990 0.90983 0.92643 0.92669 0.92783 0.91135 0.91479 0.94374 0.89968 0.93156 0.92061 0.90079 0.90765 0.92042 0.83489 0.87354 0.87853 0.92030 0.92317 0.92253 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.12 1.92 5.90 -4.05 -0.02 1.90 16 3 N -0.61 -11.78 2.53 -171.76 -0.43 -12.21 16 4 C 0.16 3.46 5.15 -4.04 -0.02 3.44 16 5 C 0.03 0.69 1.57 -155.66 -0.24 0.45 16 6 C -0.47 -12.26 7.02 -34.44 -0.24 -12.50 16 7 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 8 C 0.07 1.96 4.47 -17.82 -0.08 1.89 16 9 N -0.88 -23.63 12.88 55.43 0.71 -22.92 16 10 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C -0.15 -3.49 9.39 -26.69 -0.25 -3.74 16 15 C -0.21 -4.44 9.38 -26.69 -0.25 -4.70 16 16 C 0.24 4.87 6.36 -83.78 -0.53 4.34 16 17 C -0.17 -3.58 8.16 -39.38 -0.32 -3.90 16 18 C -0.08 -1.66 10.04 -39.61 -0.40 -2.06 16 19 C -0.19 -3.44 9.70 -39.55 -0.38 -3.82 16 20 C -0.06 -1.01 5.88 -104.65 -0.62 -1.62 16 21 C -0.11 -1.38 10.01 36.01 0.36 -1.02 16 22 C -0.21 -3.86 8.82 -39.38 -0.35 -4.20 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.14 6.35 -51.93 -0.33 0.81 16 27 H 0.07 1.03 6.18 -51.93 -0.32 0.71 16 28 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.08 1.93 6.11 -51.93 -0.32 1.61 16 30 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 33 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.06 1.16 7.06 -51.93 -0.37 0.79 16 35 H 0.15 3.57 4.66 -52.49 -0.24 3.32 16 36 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.11 1.78 6.19 -52.49 -0.33 1.46 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -26.80 328.38 -9.28 -36.07 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.51 Total: 5.44 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -2.97 Total: -27.46 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.28 Total: -35.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.80 -9.28 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.057 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds