Wall clock time and date at job start Mon Mar 30 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47592 * 2 1 4 4 C 1.46500 * 120.00541 * 274.33494 * 3 2 1 5 5 C 1.53004 * 109.46887 * 275.80770 * 4 3 2 6 6 C 1.50691 * 115.55057 * 294.95529 * 5 4 3 7 7 H 1.08003 * 120.00395 * 94.76671 * 6 5 4 8 8 C 1.37884 * 120.00132 * 274.77009 * 6 5 4 9 9 N 1.31513 * 119.99538 * 5.07213 * 8 6 5 10 10 Si 1.86801 * 119.99990 * 185.07531 * 8 6 5 11 11 H 1.48497 * 109.47371 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46874 * 119.99981 * 10 8 6 13 13 H 1.48498 * 109.46642 * 239.99907 * 10 8 6 14 14 C 1.53003 * 117.49948 * 149.28155 * 5 4 3 15 15 C 1.53000 * 117.49855 * 80.62366 * 5 4 3 16 16 C 1.39682 * 120.00066 * 94.33028 * 3 2 1 17 17 C 1.38933 * 120.07542 * 174.58513 * 16 3 2 18 18 C 1.38076 * 119.92066 * 179.97438 * 17 16 3 19 19 C 1.38311 * 120.07906 * 0.02562 * 18 17 16 20 20 C 1.38259 * 120.14766 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.96412 * 180.02562 * 20 19 18 22 22 C 1.38132 * 120.07620 * 0.29327 * 20 19 18 23 23 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46589 * 299.99560 * 1 2 3 25 25 H 1.08996 * 109.47350 * 59.99089 * 1 2 3 26 26 H 1.09004 * 109.46589 * 240.00440 * 2 1 3 27 27 H 1.08996 * 109.47350 * 120.00911 * 2 1 3 28 28 H 1.08998 * 109.47122 * 35.80205 * 4 3 2 29 29 H 1.08992 * 109.47729 * 155.80821 * 4 3 2 30 30 H 0.96997 * 119.99710 * 184.99750 * 9 8 6 31 31 H 1.08998 * 117.49760 * 0.02562 * 14 5 4 32 32 H 1.09000 * 117.49557 * 145.02077 * 14 5 4 33 33 H 1.08995 * 117.50450 * 214.97587 * 15 5 4 34 34 H 1.09005 * 117.50030 * 359.97438 * 15 5 4 35 35 H 1.07994 * 120.03943 * 359.97438 * 17 16 3 36 36 H 1.08005 * 119.95942 * 179.97438 * 18 17 16 37 37 H 1.07996 * 119.92352 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47414 * 89.99468 * 21 20 19 39 39 H 1.08998 * 109.47300 * 209.99981 * 21 20 19 40 40 H 1.09005 * 109.46918 * 329.99685 * 21 20 19 41 41 H 1.08001 * 120.03565 * 179.72670 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1722 2.1038 -1.2650 5 6 3.5276 1.7609 -1.8866 6 6 4.7341 2.2139 -1.1057 7 1 5.2193 1.5355 -0.4195 8 6 5.2187 3.4947 -1.2670 9 7 4.5711 4.3520 -2.0253 10 14 6.7951 4.0118 -0.4085 11 1 7.3265 2.8712 0.3801 12 1 7.7988 4.4234 -1.4225 13 1 6.5128 5.1521 0.4999 14 6 3.6284 1.7743 -3.4133 15 6 3.6386 0.4436 -2.6569 16 6 2.3374 2.0091 1.2062 17 6 2.9060 3.2767 1.2021 18 6 3.2196 3.8948 2.3964 19 6 2.9687 3.2532 3.5957 20 6 2.4029 1.9917 3.6034 21 6 2.1308 1.2967 4.9125 22 6 2.0918 1.3653 2.4122 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.3749 1.8129 -1.9489 29 1 2.1186 3.1765 -1.0796 30 1 4.9486 5.2288 -2.1974 31 1 2.7292 2.0279 -3.9748 32 1 4.5675 2.1106 -3.8527 33 1 4.5843 -0.0952 -2.5992 34 1 2.7461 -0.1790 -2.7205 35 1 3.1026 3.7781 0.2660 36 1 3.6620 4.8800 2.3939 37 1 3.2153 3.7388 4.5283 38 1 1.1280 1.5498 5.2567 39 1 2.2060 0.2182 4.7739 40 1 2.8616 1.6196 5.6540 41 1 1.6539 0.3781 2.4188 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:06 Heat of formation + Delta-G solvation = 38.003361 kcal Electronic energy + Delta-G solvation = -20138.817428 eV Core-core repulsion = 17404.673801 eV Total energy + Delta-G solvation = -2734.143627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55485 -38.66006 -36.64028 -34.01915 -33.41679 -31.73544 -30.52454 -27.75325 -27.31681 -26.50281 -24.07541 -22.89584 -22.10506 -21.56943 -20.38619 -18.01271 -17.93376 -16.66322 -16.56055 -16.12982 -15.77961 -15.24909 -15.21615 -14.70579 -14.44975 -14.14712 -13.92247 -13.79462 -13.44407 -13.04725 -13.00809 -12.87499 -12.70122 -12.62951 -12.52414 -12.37978 -12.07405 -11.98272 -11.79164 -11.60947 -11.36862 -10.69941 -10.56973 -10.20451 -9.92473 -9.37613 -8.07036 -7.87024 -6.09689 0.75661 0.95949 1.33013 1.38978 1.46190 2.42951 2.50225 3.19483 3.24734 3.59179 4.07939 4.15552 4.21702 4.35250 4.43885 4.52238 4.55731 4.62826 4.68303 4.71994 4.73507 4.81806 4.89824 4.95213 4.97606 5.01697 5.08438 5.11100 5.21199 5.25439 5.29841 5.41864 5.43465 5.64995 5.69876 5.77182 5.84160 5.89190 5.99838 6.27799 6.45990 6.75774 6.87463 6.99393 7.54097 9.01084 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.010000 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.995605 B = 2799.420017 C = 4171.670412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.612 5.612 4 C 0.177 3.823 5 C 0.008 3.992 6 C -0.471 4.471 7 H 0.031 0.969 8 C 0.046 3.954 9 N -0.900 5.900 10 Si 0.915 3.085 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.281 1.281 14 C -0.160 4.160 15 C -0.187 4.187 16 C 0.224 3.776 17 C -0.199 4.199 18 C -0.098 4.098 19 C -0.198 4.198 20 C -0.057 4.057 21 C -0.103 4.103 22 C -0.215 4.215 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -6.935 7.902 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.007 4.007 3 N -0.320 5.320 4 C 0.054 3.946 5 C 0.007 3.993 6 C -0.509 4.509 7 H 0.049 0.951 8 C -0.154 4.154 9 N -0.539 5.539 10 Si 0.743 3.257 11 H -0.204 1.204 12 H -0.209 1.209 13 H -0.207 1.207 14 C -0.198 4.198 15 C -0.224 4.224 16 C 0.120 3.880 17 C -0.221 4.221 18 C -0.117 4.117 19 C -0.218 4.218 20 C -0.057 4.057 21 C -0.160 4.160 22 C -0.238 4.238 23 H 0.103 0.897 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.888 -6.829 7.706 12.971 hybrid contribution 1.442 0.894 -0.207 1.709 sum -6.446 -5.935 7.500 11.533 Atomic orbital electron populations 1.22133 0.95320 1.02672 1.01604 1.21485 0.94556 0.82097 1.02597 1.46544 1.69412 1.13252 1.02755 1.20728 0.94531 0.95387 0.83997 1.19411 0.94268 0.95488 0.90160 1.20319 1.11401 0.96229 1.22929 0.95110 1.25197 0.98126 0.96283 0.95800 1.70055 1.37714 1.06720 1.39422 0.86165 0.82335 0.78238 0.78980 1.20438 1.20872 1.20741 1.22409 0.99913 1.00543 0.96932 1.22951 1.00751 0.90867 1.07796 1.17976 0.91901 0.91472 0.86623 1.21035 1.05407 0.96719 0.98917 1.20977 0.98638 0.99272 0.92831 1.20860 1.06962 0.96732 0.97246 1.19930 0.96067 0.94105 0.95618 1.20756 1.02599 1.00071 0.92542 1.20672 1.10895 1.01786 0.90423 0.89727 0.93084 0.93397 0.91155 0.90624 0.92751 0.93072 0.93374 0.90601 0.92591 0.91412 0.89027 0.86853 0.87417 0.85290 0.90143 0.90982 0.90890 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 2 C 0.12 3.43 5.90 86.38 0.51 3.94 16 3 N -0.61 -23.40 2.53 -697.32 -1.76 -25.16 16 4 C 0.18 7.59 5.15 86.38 0.44 8.03 16 5 C 0.01 0.38 1.57 -52.93 -0.08 0.30 16 6 C -0.47 -25.15 7.02 25.60 0.18 -24.97 16 7 H 0.03 1.76 7.82 -2.91 -0.02 1.74 16 8 C 0.05 2.49 4.47 84.66 0.38 2.86 16 9 N -0.90 -49.84 12.88 21.45 0.28 -49.56 16 10 Si 0.92 44.46 29.54 68.60 2.03 46.48 16 11 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 14 C -0.16 -7.19 9.39 30.62 0.29 -6.91 16 15 C -0.19 -7.61 9.38 30.62 0.29 -7.33 16 16 C 0.22 9.05 6.36 38.21 0.24 9.29 16 17 C -0.20 -8.91 8.16 22.40 0.18 -8.73 16 18 C -0.10 -3.95 10.04 22.25 0.22 -3.72 16 19 C -0.20 -6.72 9.70 22.29 0.22 -6.50 16 20 C -0.06 -1.77 5.88 -19.88 -0.12 -1.89 16 21 C -0.10 -2.24 10.01 71.24 0.71 -1.53 16 22 C -0.22 -7.34 8.82 22.40 0.20 -7.15 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 2.08 6.35 -2.38 -0.02 2.06 16 27 H 0.08 2.10 6.18 -2.39 -0.01 2.09 16 28 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.05 2.51 6.11 -2.39 -0.01 2.49 16 30 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 31 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.09 3.18 7.06 -2.38 -0.02 3.17 16 35 H 0.11 5.84 4.66 -2.91 -0.01 5.83 16 36 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 37 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 40 H 0.07 1.41 8.09 -2.38 -0.02 1.40 16 41 H 0.13 3.85 6.19 -2.91 -0.02 3.83 16 Total: -1.00 -59.16 328.38 5.93 -53.22 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.99 Total: 22.38 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 4.40 Total: -47.36 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.48 Total: -74.73 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -59.16 5.93 -53.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.227 kcal (2) G-P(sol) polarization free energy of solvation -59.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds