Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.28847 * 2 1 4 4 C 1.54382 * 110.32059 * 122.23168 * 2 1 3 5 5 N 1.48559 * 104.59104 * 142.74964 * 4 2 1 6 6 C 1.46909 * 110.99980 * 200.95940 * 5 4 2 7 7 H 1.09003 * 109.46793 * 55.42259 * 6 5 4 8 8 C 1.50694 * 109.47052 * 175.41991 * 6 5 4 9 9 H 1.07999 * 120.00229 * 35.16914 * 8 6 5 10 10 C 1.37875 * 120.00050 * 215.17063 * 8 6 5 11 11 N 1.31521 * 119.99874 * 5.16357 * 10 8 6 12 12 Si 1.86798 * 120.00202 * 185.16170 * 10 8 6 13 13 H 1.48503 * 109.47256 * 60.00086 * 12 10 8 14 14 H 1.48505 * 109.47148 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47104 * 300.00056 * 12 10 8 16 16 C 1.50703 * 109.46966 * 295.42052 * 6 5 4 17 17 C 1.38228 * 120.00116 * 314.23009 * 16 6 5 18 18 C 1.38240 * 119.99953 * 180.25971 * 17 16 6 19 19 C 1.38238 * 119.99611 * 359.50703 * 18 17 16 20 20 C 1.38231 * 120.00149 * 0.28234 * 19 18 17 21 21 C 1.38235 * 120.00100 * 359.95219 * 20 19 18 22 22 C 1.48558 * 104.22437 * 320.51875 * 5 4 2 23 23 C 1.54257 * 110.32656 * 237.86877 * 2 1 3 24 24 H 1.09002 * 110.40513 * 122.16377 * 23 2 1 25 25 C 1.53001 * 110.32140 * 0.02562 * 23 2 1 26 26 H 1.08998 * 109.47250 * 182.12752 * 1 2 3 27 27 H 1.09000 * 109.47511 * 302.13055 * 1 2 3 28 28 H 1.09006 * 109.46666 * 62.12745 * 1 2 3 29 29 H 1.09001 * 110.41096 * 23.97158 * 4 2 1 30 30 H 1.08998 * 110.41260 * 261.52758 * 4 2 1 31 31 H 0.96995 * 119.99808 * 179.97438 * 11 10 8 32 32 H 1.08007 * 120.00227 * 0.04172 * 17 16 6 33 33 H 1.07998 * 120.00057 * 179.78578 * 18 17 16 34 34 H 1.08004 * 119.99301 * 180.25506 * 19 18 17 35 35 H 1.07999 * 119.99861 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.99976 * 180.02562 * 21 20 19 37 37 H 1.08997 * 110.41035 * 158.26332 * 22 5 4 38 38 H 1.09007 * 110.41096 * 280.58600 * 22 5 4 39 39 H 1.08995 * 109.47154 * 302.90872 * 25 23 2 40 40 H 1.09002 * 109.46975 * 62.91062 * 25 23 2 41 41 H 1.09003 * 109.47106 * 182.90123 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0661 -0.7721 1.2246 5 7 3.2693 -1.4835 0.7212 6 6 3.6068 -2.6232 1.5846 7 1 2.7423 -3.2815 1.6716 8 6 4.7597 -3.3848 0.9832 9 1 5.5399 -2.8559 0.4561 10 6 4.8184 -4.7568 1.1059 11 7 3.8198 -5.4110 1.6579 12 14 6.3162 -5.6866 0.4882 13 1 7.5255 -5.2101 1.2064 14 1 6.1335 -7.1395 0.7352 15 1 6.4800 -5.4494 -0.9685 16 6 3.9950 -2.1204 2.9512 17 6 4.8641 -1.0525 3.0736 18 6 5.2244 -0.5948 4.3273 19 6 4.7076 -1.1986 5.4583 20 6 3.8351 -2.2638 5.3358 21 6 3.4786 -2.7246 4.0822 22 6 2.8807 -1.9415 -0.6375 23 6 2.0659 -0.7693 -1.2250 24 1 2.7079 -0.1260 -1.8267 25 6 0.9050 -1.2989 -2.0693 26 1 -0.3634 -1.0269 0.0381 27 1 -0.3634 0.5465 0.8702 28 1 -0.3633 0.4805 -0.9085 29 1 1.3228 -1.4863 1.5790 30 1 2.3393 -0.0797 2.0209 31 1 3.8610 -6.3763 1.7439 32 1 5.2644 -0.5780 2.1898 33 1 5.9061 0.2373 4.4230 34 1 4.9860 -0.8383 6.4377 35 1 3.4317 -2.7357 6.2195 36 1 2.7966 -3.5565 3.9865 37 1 3.7671 -2.1296 -1.2432 38 1 2.2665 -2.8399 -0.5746 39 1 0.2653 -1.9299 -1.4524 40 1 0.3249 -0.4608 -2.4557 41 1 1.2979 -1.8830 -2.9015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092085363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 19.350266 kcal Electronic energy + Delta-G solvation = -19998.454680 eV Core-core repulsion = 17263.502194 eV Total energy + Delta-G solvation = -2734.952486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.07694 -37.89880 -34.37623 -32.15423 -30.38793 -30.11115 -29.92161 -27.02666 -25.22268 -24.67121 -22.67609 -21.62560 -20.77498 -19.45238 -18.38401 -16.41941 -15.97062 -15.72416 -14.87154 -14.43413 -14.08997 -13.71486 -13.53102 -13.42505 -13.01012 -12.48443 -12.37821 -12.21239 -11.75598 -11.64327 -11.59717 -11.29417 -11.26404 -11.01472 -10.96120 -10.64635 -10.20399 -10.14947 -10.09878 -9.96975 -9.84139 -9.73295 -9.27782 -8.58002 -7.99736 -7.63360 -7.31103 -6.12165 -4.15029 2.33786 2.37206 3.28590 3.32716 3.36404 4.34805 4.72802 5.03015 5.10594 5.14354 5.25031 5.46017 5.67262 5.69381 5.74226 5.81483 5.86228 5.89156 5.96667 6.01201 6.16076 6.21599 6.23176 6.34430 6.39460 6.48501 6.52623 6.57265 6.60310 6.72530 6.86685 6.91968 6.93655 7.03646 7.30568 7.36494 7.41747 7.71315 7.77441 7.82339 8.05498 8.18168 8.48271 8.97274 9.48914 10.94567 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.009434 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.873635 B = 2967.365104 C = 4477.766320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.069 0.931 4 C 0.037 3.963 5 N -0.506 5.506 6 C 0.223 3.777 7 H 0.044 0.956 8 C -0.497 4.497 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.895 3.105 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.022 4.022 17 C -0.102 4.102 18 C -0.136 4.136 19 C -0.153 4.153 20 C -0.131 4.131 21 C -0.118 4.118 22 C 0.063 3.937 23 C -0.098 4.098 24 H 0.069 0.931 25 C -0.142 4.142 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 8.134 -0.794 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.092 4.092 5 N -0.230 5.230 6 C 0.117 3.883 7 H 0.062 0.938 8 C -0.535 4.535 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.723 3.277 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.023 4.023 17 C -0.121 4.121 18 C -0.154 4.154 19 C -0.172 4.172 20 C -0.149 4.149 21 C -0.137 4.137 22 C -0.065 4.065 23 C -0.117 4.117 24 H 0.088 0.912 25 C -0.200 4.200 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.091 8.259 -0.750 9.247 hybrid contribution 0.249 -1.285 -0.043 1.310 sum -3.842 6.974 -0.793 8.002 Atomic orbital electron populations 1.21936 0.95710 1.01613 1.00776 1.21889 0.94661 0.99214 0.95356 0.91255 1.23091 0.92717 0.97144 0.96233 1.65442 1.29709 1.25613 1.02268 1.18657 0.97591 0.86433 0.85654 0.93819 1.20874 1.07290 0.90784 1.34556 0.91894 1.24981 0.96082 0.97724 0.94857 1.69896 1.30321 1.08305 1.43958 0.86597 0.83297 0.78493 0.79327 1.20063 1.21297 1.20102 1.20480 0.93452 0.91937 0.96432 1.20972 0.97697 0.97044 0.96365 1.21008 1.00783 1.00377 0.93222 1.20802 1.00388 0.98440 0.97526 1.20946 0.99368 0.97613 0.97000 1.21083 1.00859 0.99763 0.91979 1.22775 0.97900 0.94539 0.91313 1.21981 0.96390 0.97530 0.95779 0.91245 1.21919 0.98174 1.00386 0.99483 0.92501 0.93380 0.92831 0.94849 0.91534 0.92671 0.86271 0.87674 0.87842 0.87678 0.86648 0.90753 0.94172 0.92514 0.93086 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.94 37.16 0.29 -1.56 16 2 C -0.09 -1.41 3.65 -89.24 -0.33 -1.73 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.04 0.68 5.37 -2.18 -0.01 0.67 16 5 N -0.51 -10.68 4.66 -224.80 -1.05 -11.73 16 6 C 0.22 5.40 1.59 -70.01 -0.11 5.28 16 7 H 0.04 1.19 6.87 -51.93 -0.36 0.84 16 8 C -0.50 -13.15 7.50 -34.44 -0.26 -13.41 16 9 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 10 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 11 N -0.89 -24.67 12.77 55.43 0.71 -23.96 16 12 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C -0.02 -0.50 4.10 -104.62 -0.43 -0.93 16 17 C -0.10 -2.16 9.26 -39.58 -0.37 -2.53 16 18 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 19 C -0.15 -2.76 10.05 -39.58 -0.40 -3.15 16 20 C -0.13 -2.51 10.05 -39.59 -0.40 -2.91 16 21 C -0.12 -2.61 9.67 -39.58 -0.38 -2.99 16 22 C 0.06 1.25 5.26 -2.19 -0.01 1.23 16 23 C -0.10 -1.53 3.65 -89.24 -0.33 -1.86 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 25 C -0.14 -1.92 7.93 37.16 0.29 -1.62 16 26 H 0.06 0.77 6.68 -51.93 -0.35 0.42 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.61 6.88 -51.93 -0.36 0.25 16 29 H 0.03 0.65 7.59 -51.93 -0.39 0.26 16 30 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.12 2.52 7.90 -52.48 -0.41 2.11 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.12 2.64 7.99 -52.49 -0.42 2.22 16 37 H 0.07 1.54 7.98 -51.93 -0.41 1.12 16 38 H 0.04 0.87 7.69 -51.93 -0.40 0.47 16 39 H 0.06 0.79 6.62 -51.93 -0.34 0.45 16 40 H 0.05 0.59 6.97 -51.93 -0.36 0.23 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -27.28 323.89 -10.14 -37.42 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.73 Total: 4.01 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -2.92 Total: -26.74 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.34 Total: -35.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.28 -10.14 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092085363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.768 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds