Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.28847 * 2 1 4 4 C 1.54382 * 110.32059 * 122.23168 * 2 1 3 5 5 N 1.48559 * 104.59104 * 142.74964 * 4 2 1 6 6 C 1.46909 * 110.99980 * 200.95940 * 5 4 2 7 7 H 1.09003 * 109.46793 * 55.42259 * 6 5 4 8 8 C 1.50694 * 109.47052 * 175.41991 * 6 5 4 9 9 H 1.07999 * 120.00229 * 35.16914 * 8 6 5 10 10 C 1.37875 * 120.00050 * 215.17063 * 8 6 5 11 11 N 1.31521 * 119.99874 * 5.16357 * 10 8 6 12 12 Si 1.86798 * 120.00202 * 185.16170 * 10 8 6 13 13 H 1.48503 * 109.47256 * 60.00086 * 12 10 8 14 14 H 1.48505 * 109.47148 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47104 * 300.00056 * 12 10 8 16 16 C 1.50703 * 109.46966 * 295.42052 * 6 5 4 17 17 C 1.38228 * 120.00116 * 314.23009 * 16 6 5 18 18 C 1.38240 * 119.99953 * 180.25971 * 17 16 6 19 19 C 1.38238 * 119.99611 * 359.50703 * 18 17 16 20 20 C 1.38231 * 120.00149 * 0.28234 * 19 18 17 21 21 C 1.38235 * 120.00100 * 359.95219 * 20 19 18 22 22 C 1.48558 * 104.22437 * 320.51875 * 5 4 2 23 23 C 1.54257 * 110.32656 * 237.86877 * 2 1 3 24 24 H 1.09002 * 110.40513 * 122.16377 * 23 2 1 25 25 C 1.53001 * 110.32140 * 0.02562 * 23 2 1 26 26 H 1.08998 * 109.47250 * 182.12752 * 1 2 3 27 27 H 1.09000 * 109.47511 * 302.13055 * 1 2 3 28 28 H 1.09006 * 109.46666 * 62.12745 * 1 2 3 29 29 H 1.09001 * 110.41096 * 23.97158 * 4 2 1 30 30 H 1.08998 * 110.41260 * 261.52758 * 4 2 1 31 31 H 0.96995 * 119.99808 * 179.97438 * 11 10 8 32 32 H 1.08007 * 120.00227 * 0.04172 * 17 16 6 33 33 H 1.07998 * 120.00057 * 179.78578 * 18 17 16 34 34 H 1.08004 * 119.99301 * 180.25506 * 19 18 17 35 35 H 1.07999 * 119.99861 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.99976 * 180.02562 * 21 20 19 37 37 H 1.08997 * 110.41035 * 158.26332 * 22 5 4 38 38 H 1.09007 * 110.41096 * 280.58600 * 22 5 4 39 39 H 1.08995 * 109.47154 * 302.90872 * 25 23 2 40 40 H 1.09002 * 109.46975 * 62.91062 * 25 23 2 41 41 H 1.09003 * 109.47106 * 182.90123 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0661 -0.7721 1.2246 5 7 3.2693 -1.4835 0.7212 6 6 3.6068 -2.6232 1.5846 7 1 2.7423 -3.2815 1.6716 8 6 4.7597 -3.3848 0.9832 9 1 5.5399 -2.8559 0.4561 10 6 4.8184 -4.7568 1.1059 11 7 3.8198 -5.4110 1.6579 12 14 6.3162 -5.6866 0.4882 13 1 7.5255 -5.2101 1.2064 14 1 6.1335 -7.1395 0.7352 15 1 6.4800 -5.4494 -0.9685 16 6 3.9950 -2.1204 2.9512 17 6 4.8641 -1.0525 3.0736 18 6 5.2244 -0.5948 4.3273 19 6 4.7076 -1.1986 5.4583 20 6 3.8351 -2.2638 5.3358 21 6 3.4786 -2.7246 4.0822 22 6 2.8807 -1.9415 -0.6375 23 6 2.0659 -0.7693 -1.2250 24 1 2.7079 -0.1260 -1.8267 25 6 0.9050 -1.2989 -2.0693 26 1 -0.3634 -1.0269 0.0381 27 1 -0.3634 0.5465 0.8702 28 1 -0.3633 0.4805 -0.9085 29 1 1.3228 -1.4863 1.5790 30 1 2.3393 -0.0797 2.0209 31 1 3.8610 -6.3763 1.7439 32 1 5.2644 -0.5780 2.1898 33 1 5.9061 0.2373 4.4230 34 1 4.9860 -0.8383 6.4377 35 1 3.4317 -2.7357 6.2195 36 1 2.7966 -3.5565 3.9865 37 1 3.7671 -2.1296 -1.2432 38 1 2.2665 -2.8399 -0.5746 39 1 0.2653 -1.9299 -1.4524 40 1 0.3249 -0.4608 -2.4557 41 1 1.2979 -1.8830 -2.9015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092085363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 5.338017 kcal Electronic energy + Delta-G solvation = -19999.062297 eV Core-core repulsion = 17263.502194 eV Total energy + Delta-G solvation = -2735.560103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63935 -39.40939 -36.05019 -34.03056 -31.87876 -31.55240 -31.46315 -28.76642 -26.69766 -26.20218 -24.32141 -23.21254 -22.32308 -21.18517 -19.72023 -18.39623 -17.50478 -17.19830 -16.70112 -16.01159 -15.78076 -15.24953 -15.01500 -14.73003 -14.52400 -14.14810 -13.96847 -13.67012 -13.37615 -13.09894 -13.02216 -12.91253 -12.85664 -12.69002 -12.36181 -12.32191 -11.92934 -11.72110 -11.57867 -11.47553 -11.29998 -11.23119 -10.99432 -10.63848 -9.58765 -9.29867 -9.08859 -8.17446 -6.27321 0.73255 0.78765 1.36838 1.38759 1.45746 2.36822 3.03041 3.24734 3.49917 3.79468 3.82888 4.11776 4.27112 4.31276 4.38917 4.43893 4.56795 4.61510 4.63299 4.70681 4.79207 4.82934 4.89101 4.92076 4.97419 5.01773 5.14142 5.14830 5.23361 5.32832 5.35200 5.40082 5.46786 5.48773 5.61373 5.66022 5.79057 5.80712 6.02460 6.10581 6.29736 6.42562 6.65392 6.90812 7.39657 8.87879 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.009434 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.873635 B = 2967.365104 C = 4477.766320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.086 0.914 4 C 0.039 3.961 5 N -0.510 5.510 6 C 0.233 3.767 7 H -0.001 1.001 8 C -0.505 4.505 9 H 0.052 0.948 10 C 0.019 3.981 11 N -0.917 5.917 12 Si 0.952 3.048 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.268 1.268 16 C -0.046 4.046 17 C -0.116 4.116 18 C -0.128 4.128 19 C -0.143 4.143 20 C -0.129 4.129 21 C -0.144 4.144 22 C 0.062 3.938 23 C -0.089 4.089 24 H 0.083 0.917 25 C -0.137 4.137 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.013 0.987 30 H 0.065 0.935 31 H 0.262 0.738 32 H 0.112 0.888 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.009 0.991 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 10.436 -0.283 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 H 0.104 0.896 4 C -0.089 4.089 5 N -0.234 5.234 6 C 0.126 3.874 7 H 0.016 0.984 8 C -0.543 4.543 9 H 0.070 0.930 10 C -0.181 4.181 11 N -0.556 5.556 12 Si 0.777 3.223 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.193 1.193 16 C -0.047 4.047 17 C -0.134 4.134 18 C -0.146 4.146 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.163 4.163 22 C -0.067 4.067 23 C -0.108 4.108 24 H 0.102 0.898 25 C -0.194 4.194 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.031 0.969 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.596 10.577 -0.248 11.174 hybrid contribution 0.092 -1.938 -0.128 1.945 sum -3.504 8.639 -0.376 9.330 Atomic orbital electron populations 1.21895 0.93589 1.01403 1.02592 1.21899 0.96398 0.99155 0.92947 0.89588 1.23098 0.91275 0.96631 0.97906 1.65378 1.31279 1.24272 1.02439 1.18351 0.95088 0.86652 0.87290 0.98357 1.21057 1.07514 0.91309 1.34451 0.92962 1.25689 0.98487 0.98570 0.95306 1.70036 1.31911 1.08232 1.45424 0.85701 0.80111 0.77348 0.79096 1.19897 1.20884 1.19306 1.20377 0.95120 0.93566 0.95656 1.20981 0.97905 0.96883 0.97681 1.21398 1.00347 1.00736 0.92097 1.21274 0.98532 0.96962 0.99279 1.21259 0.99130 0.97843 0.96445 1.21050 1.01762 0.99918 0.93549 1.22771 0.97411 0.95466 0.91023 1.21959 0.96820 0.95770 0.96301 0.89840 1.21884 0.97331 1.01303 0.98915 0.93702 0.92385 0.90240 0.96864 0.91619 0.92895 0.86971 0.84057 0.83532 0.84950 0.89234 0.92395 0.97238 0.93539 0.90068 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 7.94 71.98 0.57 -2.71 16 2 C -0.09 -2.49 3.65 -9.90 -0.04 -2.52 16 3 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.04 1.49 5.37 86.45 0.46 1.96 16 5 N -0.51 -22.57 4.66 -865.13 -4.03 -26.60 16 6 C 0.23 12.03 1.59 43.42 0.07 12.10 16 7 H 0.00 -0.08 6.87 -2.39 -0.02 -0.10 16 8 C -0.50 -28.12 7.50 25.60 0.19 -27.93 16 9 H 0.05 2.95 7.82 -2.91 -0.02 2.92 16 10 C 0.02 1.09 5.45 84.65 0.46 1.55 16 11 N -0.92 -53.81 12.77 21.45 0.27 -53.54 16 12 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 13 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 C -0.05 -2.19 4.10 -19.87 -0.08 -2.27 16 17 C -0.12 -4.88 9.26 22.27 0.21 -4.68 16 18 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 19 C -0.14 -4.62 10.05 22.27 0.22 -4.39 16 20 C -0.13 -4.75 10.05 22.27 0.22 -4.52 16 21 C -0.14 -6.57 9.67 22.27 0.22 -6.36 16 22 C 0.06 2.57 5.26 86.45 0.45 3.02 16 23 C -0.09 -2.74 3.65 -9.90 -0.04 -2.77 16 24 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 25 C -0.14 -3.51 7.93 71.98 0.57 -2.94 16 26 H 0.04 1.18 6.68 -2.39 -0.02 1.16 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.51 6.88 -2.38 -0.02 1.50 16 29 H 0.01 0.54 7.59 -2.39 -0.02 0.53 16 30 H 0.07 2.47 8.05 -2.39 -0.02 2.45 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.11 4.78 7.90 -2.91 -0.02 4.76 16 33 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 34 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 36 H 0.09 4.44 7.99 -2.91 -0.02 4.42 16 37 H 0.06 2.53 7.98 -2.39 -0.02 2.52 16 38 H 0.01 0.44 7.69 -2.38 -0.02 0.42 16 39 H 0.05 1.28 6.62 -2.39 -0.02 1.27 16 40 H 0.08 1.61 6.97 -2.39 -0.02 1.60 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -62.89 323.89 2.97 -59.92 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.98 Total: 20.28 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 3.72 Total: -46.65 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -3.76 Total: -80.14 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.89 2.97 -59.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092085363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.255 kcal (2) G-P(sol) polarization free energy of solvation -62.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds