Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 110.76673 * 2 1 4 4 C 1.54326 * 110.70208 * 236.80123 * 2 1 3 5 5 N 1.47442 * 107.23020 * 219.33463 * 4 2 1 6 6 C 1.46897 * 111.00208 * 236.74014 * 5 4 2 7 7 H 1.09006 * 109.46707 * 55.38768 * 6 5 4 8 8 C 1.50690 * 109.47378 * 175.39224 * 6 5 4 9 9 H 1.07997 * 120.00301 * 35.06706 * 8 6 5 10 10 C 1.37883 * 120.00021 * 215.06833 * 8 6 5 11 11 N 1.31508 * 120.00121 * 355.64591 * 10 8 6 12 12 Si 1.86798 * 120.00073 * 175.64887 * 10 8 6 13 13 H 1.48501 * 109.47073 * 59.99753 * 12 10 8 14 14 H 1.48498 * 109.47100 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47052 * 299.99957 * 12 10 8 16 16 C 1.50703 * 109.47164 * 295.39631 * 6 5 4 17 17 C 1.38237 * 119.99809 * 314.53116 * 16 6 5 18 18 C 1.38230 * 119.99806 * 179.78799 * 17 16 6 19 19 C 1.38238 * 120.00091 * 0.44323 * 18 17 16 20 20 C 1.38232 * 119.99836 * 359.81475 * 19 18 17 21 21 C 1.38236 * 119.99845 * 134.80784 * 16 6 5 22 22 C 1.47845 * 108.56894 * 359.01274 * 5 4 2 23 23 C 1.54904 * 104.79713 * 24.09374 * 22 5 4 24 24 H 1.09001 * 110.99221 * 81.02241 * 23 22 5 25 25 C 1.52995 * 111.02315 * 204.82416 * 23 22 5 26 26 H 1.09002 * 109.47425 * 181.74751 * 1 2 3 27 27 H 1.09005 * 109.46846 * 301.74968 * 1 2 3 28 28 H 1.09001 * 109.47519 * 61.74343 * 1 2 3 29 29 H 1.08992 * 109.88808 * 99.92671 * 4 2 1 30 30 H 1.09002 * 109.88491 * 338.73920 * 4 2 1 31 31 H 0.96995 * 120.00481 * 185.03119 * 11 10 8 32 32 H 1.07999 * 120.00163 * 0.02562 * 17 16 6 33 33 H 1.08005 * 120.00100 * 180.27800 * 18 17 16 34 34 H 1.08002 * 120.00074 * 179.83199 * 19 18 17 35 35 H 1.08001 * 119.99891 * 180.02562 * 20 19 18 36 36 H 1.07991 * 120.00616 * 359.97438 * 21 16 6 37 37 H 1.08997 * 110.37599 * 142.92304 * 22 5 4 38 38 H 1.09002 * 110.37180 * 265.26458 * 22 5 4 39 39 H 1.09006 * 109.47022 * 172.28393 * 25 23 22 40 40 H 1.08994 * 109.47698 * 292.28390 * 25 23 22 41 41 H 1.09001 * 109.46910 * 52.29196 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0191 0.0000 4 6 2.0755 -0.7904 -1.2080 5 7 3.2488 -1.5502 -0.7389 6 6 4.4405 -1.2218 -1.5326 7 1 4.6072 -0.1448 -1.5090 8 6 5.6394 -1.9286 -0.9549 9 1 5.5302 -2.9126 -0.5235 10 6 6.8759 -1.3189 -0.9768 11 7 7.0265 -0.1588 -1.5776 12 14 8.3373 -2.1408 -0.1533 13 1 8.5789 -3.4649 -0.7807 14 1 9.5421 -1.2883 -0.3177 15 1 8.0527 -2.3228 1.2928 16 6 4.2333 -1.6668 -2.9575 17 6 3.7109 -2.9191 -3.2214 18 6 3.5168 -3.3256 -4.5282 19 6 3.8537 -2.4834 -5.5714 20 6 4.3810 -1.2331 -5.3075 21 6 4.5711 -0.8249 -4.0005 22 6 3.4650 -1.2467 0.6918 23 6 2.0785 -0.7947 1.2142 24 1 1.4458 -1.6540 1.4365 25 6 2.2219 0.1084 2.4408 26 1 -0.3634 -1.0272 0.0313 27 1 -0.3633 0.5408 0.8739 28 1 -0.3634 0.4865 -0.9052 29 1 2.3719 -0.1014 -1.9987 30 1 1.3130 -1.4763 -1.5772 31 1 7.9091 0.2354 -1.6569 32 1 3.4508 -3.5785 -2.4065 33 1 3.1045 -4.3023 -4.7344 34 1 3.7046 -2.8020 -6.5925 35 1 4.6438 -0.5749 -6.1224 36 1 4.9830 0.1519 -3.7945 37 1 3.7982 -2.1384 1.2228 38 1 4.1930 -0.4432 0.8035 39 1 1.2479 0.5210 2.7041 40 1 2.6081 -0.4736 3.2775 41 1 2.9117 0.9216 2.2146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092085365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = 14.579475 kcal Electronic energy + Delta-G solvation = -19968.382680 eV Core-core repulsion = 17233.223317 eV Total energy + Delta-G solvation = -2735.159363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.02374 -37.78646 -34.20114 -32.05554 -30.80060 -30.07608 -29.87520 -26.88586 -25.58967 -24.32829 -22.50196 -21.51983 -20.48634 -19.64748 -19.07529 -16.59067 -15.81226 -15.12009 -14.82759 -14.35351 -14.16067 -13.76882 -13.44924 -13.07721 -12.97466 -12.63450 -12.41347 -12.20259 -11.95735 -11.80126 -11.59215 -11.42964 -11.18175 -11.04782 -10.94975 -10.63405 -10.29321 -10.20461 -10.13330 -9.96480 -9.77155 -9.73871 -9.28114 -8.59245 -7.95453 -7.59805 -7.13369 -6.11088 -4.15207 2.38309 2.41131 3.28231 3.32455 3.35674 4.34585 4.75888 5.00698 5.07009 5.18035 5.25224 5.33807 5.70931 5.72551 5.74034 5.82526 5.87305 5.91002 5.95449 6.06815 6.11909 6.18996 6.25836 6.36869 6.38584 6.49731 6.52778 6.55921 6.62979 6.73497 6.85914 6.95852 6.98099 7.05435 7.32371 7.40592 7.47249 7.76781 7.82369 7.85019 8.10484 8.23363 8.53843 8.97233 9.48875 10.94813 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.009787 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.232220 B = 2860.380293 C = 4493.378509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.069 0.931 4 C 0.049 3.951 5 N -0.528 5.528 6 C 0.231 3.769 7 H 0.039 0.961 8 C -0.498 4.498 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.020 4.020 17 C -0.102 4.102 18 C -0.137 4.137 19 C -0.154 4.154 20 C -0.132 4.132 21 C -0.115 4.115 22 C 0.074 3.926 23 C -0.103 4.103 24 H 0.074 0.926 25 C -0.138 4.138 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.264 0.736 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 0.153 0.936 9.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.079 4.079 5 N -0.252 5.252 6 C 0.125 3.875 7 H 0.057 0.943 8 C -0.536 4.536 9 H 0.081 0.919 10 C -0.137 4.137 11 N -0.524 5.524 12 Si 0.723 3.277 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.022 4.022 17 C -0.120 4.120 18 C -0.155 4.155 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.133 4.133 22 C -0.054 4.054 23 C -0.122 4.122 24 H 0.093 0.907 25 C -0.196 4.196 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.111 -0.200 0.881 9.156 hybrid contribution 1.239 0.427 0.244 1.333 sum -7.872 0.228 1.125 7.956 Atomic orbital electron populations 1.21707 0.95305 1.01467 1.00848 1.22420 0.95292 0.99244 0.96073 0.91286 1.22800 0.94372 0.95038 0.95733 1.63654 1.04696 1.54465 1.02372 1.18644 0.86906 0.96419 0.85575 0.94335 1.20910 0.91715 1.02994 1.37970 0.91855 1.24994 0.99126 0.94457 0.95113 1.69875 1.23364 1.16781 1.42350 0.86597 0.81599 0.79399 0.80144 1.20138 1.21311 1.20042 1.20460 0.91809 0.93002 0.96892 1.20954 0.99146 0.96513 0.95410 1.20990 1.02187 0.98858 0.93475 1.20791 1.03318 0.95236 0.97850 1.20946 1.01258 0.96381 0.96477 1.21082 0.99886 1.00362 0.91990 1.22687 0.93823 0.99765 0.89103 1.22421 0.98176 0.97637 0.94008 0.90728 1.21691 1.00873 0.99486 0.97524 0.92690 0.93250 0.93093 0.93696 0.92052 0.92630 0.86360 0.87759 0.87921 0.87755 0.86556 0.91424 0.93326 0.93282 0.92856 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.13 37.16 0.34 -1.38 16 2 C -0.11 -1.73 3.01 -88.79 -0.27 -2.00 16 3 H 0.07 1.12 8.04 -51.94 -0.42 0.70 16 4 C 0.05 0.90 5.93 -2.83 -0.02 0.89 16 5 N -0.53 -11.09 4.48 -226.08 -1.01 -12.10 16 6 C 0.23 5.57 1.32 -70.02 -0.09 5.47 16 7 H 0.04 1.05 7.14 -51.93 -0.37 0.68 16 8 C -0.50 -13.12 7.31 -34.44 -0.25 -13.37 16 9 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 10 C 0.07 1.78 5.45 -17.82 -0.10 1.69 16 11 N -0.89 -24.54 12.83 55.43 0.71 -23.83 16 12 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C -0.02 -0.47 3.88 -104.62 -0.41 -0.88 16 17 C -0.10 -2.17 9.26 -39.58 -0.37 -2.54 16 18 C -0.14 -2.58 10.05 -39.58 -0.40 -2.98 16 19 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 20 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 21 C -0.11 -2.55 9.67 -39.58 -0.38 -2.93 16 22 C 0.07 1.45 5.20 -2.30 -0.01 1.44 16 23 C -0.10 -1.62 3.08 -88.49 -0.27 -1.89 16 24 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 25 C -0.14 -1.87 9.31 37.16 0.35 -1.53 16 26 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.89 7.21 -51.93 -0.37 0.51 16 30 H 0.06 1.09 7.82 -51.93 -0.41 0.69 16 31 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 32 H 0.12 2.52 7.89 -52.49 -0.41 2.11 16 33 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.70 8.00 -52.49 -0.42 2.28 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.05 1.07 7.55 -51.93 -0.39 0.67 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -27.15 329.75 -10.01 -37.16 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.98 Total: 3.96 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.67 Total: -26.16 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.30 Total: -35.93 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.15 -10.01 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092085365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.735 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds