Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 110.76673 * 2 1 4 4 C 1.54326 * 110.70208 * 236.80123 * 2 1 3 5 5 N 1.47442 * 107.23020 * 219.33463 * 4 2 1 6 6 C 1.46897 * 111.00208 * 236.74014 * 5 4 2 7 7 H 1.09006 * 109.46707 * 55.38768 * 6 5 4 8 8 C 1.50690 * 109.47378 * 175.39224 * 6 5 4 9 9 H 1.07997 * 120.00301 * 35.06706 * 8 6 5 10 10 C 1.37883 * 120.00021 * 215.06833 * 8 6 5 11 11 N 1.31508 * 120.00121 * 355.64591 * 10 8 6 12 12 Si 1.86798 * 120.00073 * 175.64887 * 10 8 6 13 13 H 1.48501 * 109.47073 * 59.99753 * 12 10 8 14 14 H 1.48498 * 109.47100 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47052 * 299.99957 * 12 10 8 16 16 C 1.50703 * 109.47164 * 295.39631 * 6 5 4 17 17 C 1.38237 * 119.99809 * 314.53116 * 16 6 5 18 18 C 1.38230 * 119.99806 * 179.78799 * 17 16 6 19 19 C 1.38238 * 120.00091 * 0.44323 * 18 17 16 20 20 C 1.38232 * 119.99836 * 359.81475 * 19 18 17 21 21 C 1.38236 * 119.99845 * 134.80784 * 16 6 5 22 22 C 1.47845 * 108.56894 * 359.01274 * 5 4 2 23 23 C 1.54904 * 104.79713 * 24.09374 * 22 5 4 24 24 H 1.09001 * 110.99221 * 81.02241 * 23 22 5 25 25 C 1.52995 * 111.02315 * 204.82416 * 23 22 5 26 26 H 1.09002 * 109.47425 * 181.74751 * 1 2 3 27 27 H 1.09005 * 109.46846 * 301.74968 * 1 2 3 28 28 H 1.09001 * 109.47519 * 61.74343 * 1 2 3 29 29 H 1.08992 * 109.88808 * 99.92671 * 4 2 1 30 30 H 1.09002 * 109.88491 * 338.73920 * 4 2 1 31 31 H 0.96995 * 120.00481 * 185.03119 * 11 10 8 32 32 H 1.07999 * 120.00163 * 0.02562 * 17 16 6 33 33 H 1.08005 * 120.00100 * 180.27800 * 18 17 16 34 34 H 1.08002 * 120.00074 * 179.83199 * 19 18 17 35 35 H 1.08001 * 119.99891 * 180.02562 * 20 19 18 36 36 H 1.07991 * 120.00616 * 359.97438 * 21 16 6 37 37 H 1.08997 * 110.37599 * 142.92304 * 22 5 4 38 38 H 1.09002 * 110.37180 * 265.26458 * 22 5 4 39 39 H 1.09006 * 109.47022 * 172.28393 * 25 23 22 40 40 H 1.08994 * 109.47698 * 292.28390 * 25 23 22 41 41 H 1.09001 * 109.46910 * 52.29196 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0191 0.0000 4 6 2.0755 -0.7904 -1.2080 5 7 3.2488 -1.5502 -0.7389 6 6 4.4405 -1.2218 -1.5326 7 1 4.6072 -0.1448 -1.5090 8 6 5.6394 -1.9286 -0.9549 9 1 5.5302 -2.9126 -0.5235 10 6 6.8759 -1.3189 -0.9768 11 7 7.0265 -0.1588 -1.5776 12 14 8.3373 -2.1408 -0.1533 13 1 8.5789 -3.4649 -0.7807 14 1 9.5421 -1.2883 -0.3177 15 1 8.0527 -2.3228 1.2928 16 6 4.2333 -1.6668 -2.9575 17 6 3.7109 -2.9191 -3.2214 18 6 3.5168 -3.3256 -4.5282 19 6 3.8537 -2.4834 -5.5714 20 6 4.3810 -1.2331 -5.3075 21 6 4.5711 -0.8249 -4.0005 22 6 3.4650 -1.2467 0.6918 23 6 2.0785 -0.7947 1.2142 24 1 1.4458 -1.6540 1.4365 25 6 2.2219 0.1084 2.4408 26 1 -0.3634 -1.0272 0.0313 27 1 -0.3633 0.5408 0.8739 28 1 -0.3634 0.4865 -0.9052 29 1 2.3719 -0.1014 -1.9987 30 1 1.3130 -1.4763 -1.5772 31 1 7.9091 0.2354 -1.6569 32 1 3.4508 -3.5785 -2.4065 33 1 3.1045 -4.3023 -4.7344 34 1 3.7046 -2.8020 -6.5925 35 1 4.6438 -0.5749 -6.1224 36 1 4.9830 0.1519 -3.7945 37 1 3.7982 -2.1384 1.2228 38 1 4.1930 -0.4432 0.8035 39 1 1.2479 0.5210 2.7041 40 1 2.6081 -0.4736 3.2775 41 1 2.9117 0.9216 2.2146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092085365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = 0.956295 kcal Electronic energy + Delta-G solvation = -19968.973425 eV Core-core repulsion = 17233.223317 eV Total energy + Delta-G solvation = -2735.750108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60988 -39.31133 -35.89840 -33.91352 -32.08746 -31.64626 -31.46562 -28.66650 -27.01469 -25.94215 -24.10361 -23.11690 -22.01805 -21.20627 -20.55741 -18.56806 -17.38918 -16.92635 -16.33099 -16.01846 -15.84636 -15.27575 -14.77508 -14.62307 -14.38869 -14.20471 -13.94669 -13.68859 -13.38559 -13.36028 -13.08694 -12.91599 -12.86010 -12.70387 -12.45370 -12.28303 -11.94580 -11.71385 -11.61482 -11.51644 -11.48482 -11.12131 -11.06925 -10.62720 -9.56089 -9.27101 -8.89237 -8.15410 -6.26571 0.76148 0.81326 1.37577 1.38880 1.46158 2.37315 3.03419 3.26113 3.51590 3.72021 3.86075 3.99600 4.29115 4.32720 4.44002 4.46086 4.58308 4.59324 4.65940 4.69055 4.76144 4.85147 4.91565 4.94797 5.03567 5.07516 5.11537 5.19344 5.19858 5.25444 5.37262 5.44004 5.44762 5.49009 5.60616 5.68176 5.81332 5.83326 6.05335 6.14691 6.36043 6.46342 6.74439 6.92341 7.40670 8.88872 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.009787 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.232220 B = 2860.380293 C = 4493.378509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 H 0.057 0.943 4 C 0.050 3.950 5 N -0.532 5.532 6 C 0.243 3.757 7 H -0.007 1.007 8 C -0.505 4.505 9 H 0.053 0.947 10 C 0.019 3.981 11 N -0.916 5.916 12 Si 0.952 3.048 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.268 1.268 16 C -0.044 4.044 17 C -0.116 4.116 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.131 4.131 21 C -0.140 4.140 22 C 0.071 3.929 23 C -0.091 4.091 24 H 0.090 0.910 25 C -0.133 4.133 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.262 0.738 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 -1.239 0.431 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.076 0.924 4 C -0.078 4.078 5 N -0.255 5.255 6 C 0.136 3.864 7 H 0.011 0.989 8 C -0.544 4.544 9 H 0.071 0.929 10 C -0.181 4.181 11 N -0.554 5.554 12 Si 0.777 3.223 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.193 1.193 16 C -0.045 4.045 17 C -0.134 4.134 18 C -0.147 4.147 19 C -0.161 4.161 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.057 4.057 23 C -0.110 4.110 24 H 0.108 0.892 25 C -0.191 4.191 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.890 -1.597 0.383 11.013 hybrid contribution 1.732 0.843 0.324 1.953 sum -9.158 -0.753 0.707 9.216 Atomic orbital electron populations 1.21650 0.92195 1.02428 1.02221 1.22389 0.97732 0.97990 0.94394 0.92422 1.22821 0.93527 0.94973 0.96469 1.63606 1.04319 1.54890 1.02718 1.18317 0.87567 0.93330 0.87197 0.98924 1.21086 0.92885 1.02505 1.37895 0.92893 1.25701 1.01575 0.95087 0.95752 1.70015 1.23573 1.18033 1.43800 0.85701 0.78683 0.78414 0.79469 1.19875 1.20975 1.19295 1.20376 0.93747 0.94296 0.96102 1.20973 0.99937 0.95664 0.96858 1.21380 1.00736 1.00357 0.92238 1.21257 1.01083 0.94002 0.99799 1.21254 1.00390 0.97608 0.95651 1.21038 1.01512 0.99646 0.93691 1.22690 0.95885 0.98247 0.88851 1.22379 0.95288 0.98518 0.94789 0.89159 1.21661 1.02117 0.98711 0.96603 0.91929 0.91177 0.92448 0.96004 0.90929 0.92890 0.86992 0.84138 0.83643 0.85106 0.89217 0.92226 0.96783 0.90555 0.91942 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.13 71.98 0.66 -2.24 16 2 C -0.11 -3.25 3.01 -9.61 -0.03 -3.28 16 3 H 0.06 1.90 8.04 -2.39 -0.02 1.88 16 4 C 0.05 1.90 5.93 86.65 0.51 2.41 16 5 N -0.53 -23.34 4.48 -869.17 -3.89 -27.24 16 6 C 0.24 12.48 1.32 43.42 0.06 12.53 16 7 H -0.01 -0.42 7.14 -2.38 -0.02 -0.43 16 8 C -0.51 -28.00 7.31 25.60 0.19 -27.81 16 9 H 0.05 2.97 7.82 -2.91 -0.02 2.95 16 10 C 0.02 1.06 5.45 84.66 0.46 1.52 16 11 N -0.92 -53.48 12.83 21.45 0.28 -53.20 16 12 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 C -0.04 -2.11 3.88 -19.86 -0.08 -2.18 16 17 C -0.12 -4.92 9.26 22.27 0.21 -4.71 16 18 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 19 C -0.14 -4.74 10.05 22.27 0.22 -4.51 16 20 C -0.13 -4.92 10.05 22.27 0.22 -4.70 16 21 C -0.14 -6.47 9.67 22.27 0.22 -6.26 16 22 C 0.07 2.92 5.20 86.77 0.45 3.37 16 23 C -0.09 -2.77 3.08 -9.41 -0.03 -2.80 16 24 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 25 C -0.13 -3.44 9.31 71.98 0.67 -2.77 16 26 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.02 0.91 7.21 -2.39 -0.02 0.89 16 30 H 0.07 2.56 7.82 -2.39 -0.02 2.54 16 31 H 0.26 14.66 8.32 -92.71 -0.77 13.89 16 32 H 0.11 4.80 7.89 -2.91 -0.02 4.78 16 33 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.09 4.51 8.00 -2.92 -0.02 4.49 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.01 0.66 7.55 -2.39 -0.02 0.64 16 39 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 Total: -1.00 -62.43 329.75 3.33 -59.11 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.97 Total: 20.67 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 3.95 Total: -45.71 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.62 Total: -80.44 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -62.43 3.33 -59.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092085365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.064 kcal (2) G-P(sol) polarization free energy of solvation -62.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds