Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46829 * 2 1 4 4 C 1.50696 * 109.47417 * 239.99421 * 2 1 3 5 5 H 1.07995 * 120.00243 * 245.38161 * 4 2 1 6 6 C 1.37881 * 119.99897 * 65.11468 * 4 2 1 7 7 N 1.31513 * 119.99605 * 355.41783 * 6 4 2 8 8 Si 1.86794 * 120.00081 * 175.42379 * 6 4 2 9 9 H 1.48501 * 109.47341 * 94.99467 * 8 6 4 10 10 H 1.48500 * 109.47100 * 214.99468 * 8 6 4 11 11 H 1.48497 * 109.47024 * 334.99218 * 8 6 4 12 12 N 1.46903 * 109.46921 * 119.99110 * 2 1 3 13 13 C 1.46852 * 110.99686 * 59.21819 * 12 2 1 14 14 C 1.53036 * 109.52249 * 174.15969 * 13 12 2 15 15 C 1.53117 * 109.27923 * 59.17752 * 14 13 12 16 16 C 1.50701 * 109.52054 * 182.43846 * 15 14 13 17 17 C 1.38241 * 119.99829 * 59.41255 * 16 15 14 18 18 C 1.38236 * 119.99577 * 179.76338 * 17 16 15 19 19 C 1.38234 * 120.00030 * 0.48245 * 18 17 16 20 20 C 1.38228 * 120.00141 * 359.79234 * 19 18 17 21 21 C 1.38233 * 120.00269 * 359.95238 * 20 19 18 22 22 C 1.53118 * 109.16086 * 302.34455 * 15 14 13 23 23 C 1.46840 * 111.00287 * 295.00501 * 12 2 1 24 24 H 1.09004 * 109.46975 * 54.94890 * 1 2 3 25 25 H 1.09008 * 109.46890 * 174.93706 * 1 2 3 26 26 H 1.08998 * 109.47676 * 294.94076 * 1 2 3 27 27 H 0.97005 * 119.99509 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.45869 * 294.17352 * 13 12 2 29 29 H 1.08996 * 109.46749 * 54.14072 * 13 12 2 30 30 H 1.08996 * 109.49954 * 299.23342 * 14 13 12 31 31 H 1.09007 * 109.50189 * 179.11553 * 14 13 12 32 32 H 1.09003 * 109.52591 * 62.25320 * 15 14 13 33 33 H 1.07997 * 120.00050 * 359.97438 * 17 16 15 34 34 H 1.08003 * 119.99623 * 180.25100 * 18 17 16 35 35 H 1.07999 * 119.99741 * 179.76850 * 19 18 17 36 36 H 1.08003 * 120.00161 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.00283 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.50373 * 297.71263 * 22 15 14 39 39 H 1.08996 * 109.50513 * 177.59644 * 22 15 14 40 40 H 1.08999 * 109.46276 * 305.85384 * 23 12 2 41 41 H 1.09006 * 109.46347 * 65.82840 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5797 -1.6364 -1.1336 6 6 1.7885 -0.1813 -2.4799 7 7 1.0414 0.8939 -2.6042 8 14 2.5191 -0.9914 -3.9962 9 1 1.5254 -1.9237 -4.5867 10 1 2.8727 0.0513 -4.9927 11 1 3.7399 -1.7458 -3.6147 12 7 2.0196 -0.6923 1.1996 13 6 1.5335 -2.0774 1.2430 14 6 2.1776 -2.8087 2.4230 15 6 1.8221 -2.0822 3.7231 16 6 2.5026 -2.7629 4.8826 17 6 3.8810 -2.8646 4.9122 18 6 4.5054 -3.4847 5.9782 19 6 3.7511 -4.0118 7.0098 20 6 2.3726 -3.9150 6.9774 21 6 1.7483 -3.2903 5.9140 22 6 2.2963 -0.6291 3.6326 23 6 1.6487 0.0391 2.4176 24 1 -0.3633 0.5902 -0.8413 25 1 -0.3633 -1.0237 -0.0907 26 1 -0.3634 0.4333 0.9318 27 1 0.8695 1.2660 -3.4834 28 1 0.4501 -2.0783 1.3628 29 1 1.7964 -2.5839 0.3145 30 1 3.2602 -2.8201 2.2968 31 1 1.8046 -3.8321 2.4643 32 1 0.7421 -2.1045 3.8692 33 1 4.4700 -2.4567 4.1041 34 1 5.5825 -3.5606 6.0033 35 1 4.2389 -4.4995 7.8408 36 1 1.7833 -4.3272 7.7831 37 1 0.6713 -3.2144 5.8889 38 1 3.3808 -0.6062 3.5256 39 1 2.0082 -0.0952 4.5382 40 1 1.9954 1.0697 2.3421 41 1 0.5647 0.0281 2.5320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097078973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = 14.961664 kcal Electronic energy + Delta-G solvation = -19418.274710 eV Core-core repulsion = 16683.131920 eV Total energy + Delta-G solvation = -2735.142790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71417 -38.04006 -34.72074 -32.41015 -30.89098 -30.29447 -30.15416 -27.67895 -25.23516 -24.01073 -22.66245 -22.46657 -21.38400 -20.00150 -18.54749 -16.86752 -16.12766 -15.43961 -15.10277 -14.84068 -14.15414 -14.00068 -13.70446 -13.51689 -13.44409 -13.07231 -12.67702 -12.61134 -12.09382 -11.72862 -11.50255 -11.35843 -11.20543 -11.01805 -10.78608 -10.72879 -10.46018 -10.32407 -10.23595 -10.05640 -9.85706 -9.45845 -8.89694 -8.78665 -8.56798 -8.39323 -7.07106 -5.99603 -4.01892 1.40134 1.42335 3.31863 3.39114 3.43820 3.81984 4.43735 4.77012 4.86808 4.99632 5.02616 5.13468 5.29570 5.35197 5.36335 5.51888 5.58398 5.64077 5.80038 5.98242 6.03291 6.07790 6.12418 6.20443 6.28299 6.33620 6.46750 6.50836 6.53763 6.56010 6.68802 6.73755 6.85032 6.88805 6.89645 7.05023 7.17159 7.54710 7.72363 7.85465 8.17595 8.42488 8.65647 9.04071 9.62823 11.08575 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037669 B = 0.004368 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.134954 B = 6408.282546 C = 6758.927472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.530 5.530 13 C 0.062 3.938 14 C -0.107 4.107 15 C -0.050 4.050 16 C -0.064 4.064 17 C -0.112 4.112 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.103 4.103 23 C 0.053 3.947 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.008 0.992 27 H 0.259 0.741 28 H 0.022 0.978 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 -7.198 16.256 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.254 5.254 13 C -0.066 4.066 14 C -0.144 4.144 15 C -0.069 4.069 16 C -0.064 4.064 17 C -0.130 4.130 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.075 4.075 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.766 -7.078 16.080 17.786 hybrid contribution -0.640 -0.344 -0.792 1.075 sum 2.125 -7.422 15.288 17.127 Atomic orbital electron populations 1.22384 1.01084 0.99881 0.99308 1.19299 0.89546 0.94657 0.86084 0.94151 1.21121 1.34349 1.08488 0.89866 0.91960 1.24928 0.95182 0.95189 0.98957 1.69924 1.37752 1.22219 1.23451 0.86542 0.79530 0.78973 0.82722 1.20973 1.21270 1.19789 1.62264 1.59619 1.01373 1.02144 1.21947 0.95955 0.90831 0.97852 1.21706 1.01676 0.97726 0.93337 1.20278 0.98970 0.95192 0.92453 1.20043 0.93782 0.97003 0.95542 1.21111 0.94364 0.99146 0.98362 1.21145 0.99703 0.98592 0.94397 1.21075 0.94126 1.00996 0.98918 1.21087 0.94777 0.99810 0.98346 1.21096 0.99685 0.99007 0.94209 1.21634 1.01305 0.93796 0.97358 1.22004 0.97009 0.97726 0.90804 0.90189 0.95115 0.97307 0.93086 0.95955 0.89801 0.91326 0.92564 0.91144 0.85723 0.86345 0.86586 0.86501 0.86370 0.91264 0.92570 0.91581 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.22 37.16 0.31 -3.73 16 2 C 0.21 5.27 2.29 -68.87 -0.16 5.11 16 3 H 0.04 1.12 8.08 -51.93 -0.42 0.70 16 4 C -0.50 -13.58 7.92 -34.44 -0.27 -13.86 16 5 H 0.06 1.69 6.55 -52.49 -0.34 1.35 16 6 C 0.06 1.61 5.36 -17.82 -0.10 1.52 16 7 N -0.89 -25.52 11.58 55.43 0.64 -24.88 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 N -0.53 -11.23 4.63 -228.08 -1.06 -12.29 16 13 C 0.06 1.21 4.67 -3.83 -0.02 1.19 16 14 C -0.11 -1.68 5.22 -26.65 -0.14 -1.82 16 15 C -0.05 -0.72 2.43 -91.65 -0.22 -0.94 16 16 C -0.06 -0.83 4.79 -104.62 -0.50 -1.33 16 17 C -0.11 -1.41 8.67 -39.58 -0.34 -1.75 16 18 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 19 C -0.13 -1.38 10.05 -39.59 -0.40 -1.78 16 20 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 21 C -0.12 -1.45 9.67 -39.58 -0.38 -1.83 16 22 C -0.10 -1.55 5.23 -26.65 -0.14 -1.69 16 23 C 0.05 0.97 5.03 -3.84 -0.02 0.95 16 24 H 0.08 2.13 6.44 -51.93 -0.33 1.79 16 25 H 0.03 0.72 6.81 -51.92 -0.35 0.37 16 26 H 0.01 0.18 6.42 -51.93 -0.33 -0.15 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 29 H 0.08 1.78 6.25 -51.93 -0.32 1.45 16 30 H 0.07 1.10 7.28 -51.93 -0.38 0.73 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 33 H 0.12 1.56 7.06 -52.49 -0.37 1.19 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 37 H 0.12 1.25 7.95 -52.49 -0.42 0.83 16 38 H 0.07 1.06 7.34 -51.93 -0.38 0.68 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 41 H 0.02 0.46 6.62 -51.93 -0.34 0.11 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -28.29 314.97 -10.30 -38.58 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.43 Total: 0.92 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -3.18 Total: -23.39 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.42 Total: -37.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.29 -10.30 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.544 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds