Wall clock time and date at job start Mon Mar 30 2020 06:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46829 * 2 1 4 4 C 1.50696 * 109.47417 * 239.99421 * 2 1 3 5 5 H 1.07995 * 120.00243 * 245.38161 * 4 2 1 6 6 C 1.37881 * 119.99897 * 65.11468 * 4 2 1 7 7 N 1.31513 * 119.99605 * 355.41783 * 6 4 2 8 8 Si 1.86794 * 120.00081 * 175.42379 * 6 4 2 9 9 H 1.48501 * 109.47341 * 94.99467 * 8 6 4 10 10 H 1.48500 * 109.47100 * 214.99468 * 8 6 4 11 11 H 1.48497 * 109.47024 * 334.99218 * 8 6 4 12 12 N 1.46903 * 109.46921 * 119.99110 * 2 1 3 13 13 C 1.46852 * 110.99686 * 59.21819 * 12 2 1 14 14 C 1.53036 * 109.52249 * 174.15969 * 13 12 2 15 15 C 1.53117 * 109.27923 * 59.17752 * 14 13 12 16 16 C 1.50701 * 109.52054 * 182.43846 * 15 14 13 17 17 C 1.38241 * 119.99829 * 59.41255 * 16 15 14 18 18 C 1.38236 * 119.99577 * 179.76338 * 17 16 15 19 19 C 1.38234 * 120.00030 * 0.48245 * 18 17 16 20 20 C 1.38228 * 120.00141 * 359.79234 * 19 18 17 21 21 C 1.38233 * 120.00269 * 359.95238 * 20 19 18 22 22 C 1.53118 * 109.16086 * 302.34455 * 15 14 13 23 23 C 1.46840 * 111.00287 * 295.00501 * 12 2 1 24 24 H 1.09004 * 109.46975 * 54.94890 * 1 2 3 25 25 H 1.09008 * 109.46890 * 174.93706 * 1 2 3 26 26 H 1.08998 * 109.47676 * 294.94076 * 1 2 3 27 27 H 0.97005 * 119.99509 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.45869 * 294.17352 * 13 12 2 29 29 H 1.08996 * 109.46749 * 54.14072 * 13 12 2 30 30 H 1.08996 * 109.49954 * 299.23342 * 14 13 12 31 31 H 1.09007 * 109.50189 * 179.11553 * 14 13 12 32 32 H 1.09003 * 109.52591 * 62.25320 * 15 14 13 33 33 H 1.07997 * 120.00050 * 359.97438 * 17 16 15 34 34 H 1.08003 * 119.99623 * 180.25100 * 18 17 16 35 35 H 1.07999 * 119.99741 * 179.76850 * 19 18 17 36 36 H 1.08003 * 120.00161 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.00283 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.50373 * 297.71263 * 22 15 14 39 39 H 1.08996 * 109.50513 * 177.59644 * 22 15 14 40 40 H 1.08999 * 109.46276 * 305.85384 * 23 12 2 41 41 H 1.09006 * 109.46347 * 65.82840 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5797 -1.6364 -1.1336 6 6 1.7885 -0.1813 -2.4799 7 7 1.0414 0.8939 -2.6042 8 14 2.5191 -0.9914 -3.9962 9 1 1.5254 -1.9237 -4.5867 10 1 2.8727 0.0513 -4.9927 11 1 3.7399 -1.7458 -3.6147 12 7 2.0196 -0.6923 1.1996 13 6 1.5335 -2.0774 1.2430 14 6 2.1776 -2.8087 2.4230 15 6 1.8221 -2.0822 3.7231 16 6 2.5026 -2.7629 4.8826 17 6 3.8810 -2.8646 4.9122 18 6 4.5054 -3.4847 5.9782 19 6 3.7511 -4.0118 7.0098 20 6 2.3726 -3.9150 6.9774 21 6 1.7483 -3.2903 5.9140 22 6 2.2963 -0.6291 3.6326 23 6 1.6487 0.0391 2.4176 24 1 -0.3633 0.5902 -0.8413 25 1 -0.3633 -1.0237 -0.0907 26 1 -0.3634 0.4333 0.9318 27 1 0.8695 1.2660 -3.4834 28 1 0.4501 -2.0783 1.3628 29 1 1.7964 -2.5839 0.3145 30 1 3.2602 -2.8201 2.2968 31 1 1.8046 -3.8321 2.4643 32 1 0.7421 -2.1045 3.8692 33 1 4.4700 -2.4567 4.1041 34 1 5.5825 -3.5606 6.0033 35 1 4.2389 -4.4995 7.8408 36 1 1.7833 -4.3272 7.7831 37 1 0.6713 -3.2144 5.8889 38 1 3.3808 -0.6062 3.5256 39 1 2.0082 -0.0952 4.5382 40 1 1.9954 1.0697 2.3421 41 1 0.5647 0.0281 2.5320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097078973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:32 Heat of formation + Delta-G solvation = 0.492680 kcal Electronic energy + Delta-G solvation = -19418.902132 eV Core-core repulsion = 16683.131920 eV Total energy + Delta-G solvation = -2735.770212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82098 -39.37262 -36.26686 -34.21639 -31.76203 -31.71467 -31.51696 -29.23308 -27.31570 -25.37444 -23.92685 -23.56258 -22.66353 -21.46798 -19.99180 -18.19278 -17.76689 -17.04831 -16.16879 -16.02070 -15.81797 -15.50839 -15.03471 -14.97855 -14.57212 -14.14221 -14.07785 -13.97438 -13.56238 -13.36668 -12.99956 -12.91022 -12.66678 -12.60111 -12.45194 -12.20227 -11.99641 -11.91302 -11.83527 -11.46082 -11.40065 -10.98714 -10.75324 -10.50957 -9.73910 -9.49229 -8.79866 -8.11009 -6.20225 0.53489 0.57994 1.41768 1.43496 1.54640 2.43712 2.95609 3.18384 3.40695 3.76483 3.86311 4.08772 4.20651 4.24437 4.36166 4.39663 4.45021 4.54606 4.65204 4.68748 4.73861 4.78508 4.86533 4.87041 4.94865 5.06126 5.08551 5.14364 5.16706 5.25480 5.26327 5.30487 5.46518 5.56596 5.66859 5.70047 5.73520 5.77202 5.87300 6.20757 6.21163 6.53846 6.80883 6.93980 7.48645 8.96478 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037669 B = 0.004368 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.134954 B = 6408.282546 C = 6758.927472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.213 3.787 3 H 0.006 0.994 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.538 5.538 13 C 0.066 3.934 14 C -0.096 4.096 15 C -0.042 4.042 16 C -0.078 4.078 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.093 4.093 23 C 0.053 3.947 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.018 0.982 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -8.745 18.133 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.106 3.894 3 H 0.024 0.976 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.263 5.263 13 C -0.062 4.062 14 C -0.134 4.134 15 C -0.061 4.061 16 C -0.078 4.078 17 C -0.145 4.145 18 C -0.145 4.145 19 C -0.151 4.151 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.076 4.076 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.225 -8.635 17.976 20.201 hybrid contribution -0.770 0.133 -1.297 1.515 sum 2.454 -8.502 16.679 18.881 Atomic orbital electron populations 1.22164 1.00528 0.99295 0.99072 1.19061 0.89840 0.93026 0.87455 0.97568 1.21389 1.34324 1.08471 0.91046 0.92454 1.25699 0.95505 0.95778 1.01806 1.70048 1.38685 1.23390 1.24078 0.85544 0.78863 0.78094 0.79133 1.20311 1.20943 1.19339 1.62165 1.59858 1.02249 1.01989 1.21913 0.95938 0.89847 0.98521 1.21598 1.01001 0.98156 0.92647 1.20142 0.99277 0.94386 0.92250 1.19895 0.94010 0.98285 0.95618 1.21170 0.94339 0.99987 0.98968 1.21409 1.00851 0.98122 0.94078 1.21444 0.94239 1.00148 0.99225 1.21421 0.95250 0.99076 0.98487 1.21293 1.00333 0.98971 0.94243 1.21552 1.00741 0.94480 0.96320 1.22075 0.97222 0.97509 0.90757 0.92850 0.95229 0.95439 0.93048 0.96374 0.92185 0.91791 0.91086 0.90815 0.86456 0.84605 0.84023 0.84067 0.85335 0.91626 0.90579 0.92316 0.95810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.46 8.22 71.98 0.59 -6.87 16 2 C 0.21 11.02 2.29 44.17 0.10 11.12 16 3 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 4 C -0.51 -28.60 7.92 25.60 0.20 -28.39 16 5 H 0.06 3.18 6.55 -2.91 -0.02 3.16 16 6 C 0.01 0.59 5.36 84.66 0.45 1.04 16 7 N -0.92 -53.79 11.58 21.45 0.25 -53.54 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.54 -23.21 4.63 -875.51 -4.06 -27.27 16 13 C 0.07 2.57 4.67 86.32 0.40 2.97 16 14 C -0.10 -2.96 5.22 30.65 0.16 -2.80 16 15 C -0.04 -1.14 2.43 -11.46 -0.03 -1.16 16 16 C -0.08 -1.88 4.79 -19.86 -0.10 -1.98 16 17 C -0.13 -2.97 8.67 22.27 0.19 -2.78 16 18 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 19 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 20 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 21 C -0.13 -2.75 9.67 22.27 0.22 -2.53 16 22 C -0.09 -2.70 5.23 30.65 0.16 -2.54 16 23 C 0.05 1.91 5.03 86.33 0.43 2.34 16 24 H 0.05 2.91 6.44 -2.38 -0.02 2.89 16 25 H 0.03 1.41 6.81 -2.38 -0.02 1.40 16 26 H 0.03 1.20 6.42 -2.39 -0.02 1.19 16 27 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 28 H 0.02 0.71 6.74 -2.39 -0.02 0.70 16 29 H 0.06 2.60 6.25 -2.39 -0.01 2.58 16 30 H 0.06 2.03 7.28 -2.39 -0.02 2.01 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.07 1.95 7.88 -2.39 -0.02 1.93 16 33 H 0.12 2.84 7.06 -2.91 -0.02 2.82 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.13 2.36 7.95 -2.91 -0.02 2.34 16 38 H 0.07 1.96 7.34 -2.39 -0.02 1.94 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 41 H 0.02 0.87 6.62 -2.38 -0.02 0.85 16 Total: -1.00 -61.12 314.97 2.67 -58.45 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.99 Total: 14.04 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.46 Total: -37.92 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -3.81 Total: -80.81 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -61.12 2.67 -58.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.939 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds