Wall clock time and date at job start Mon Mar 30 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46893 * 111.00389 * 2 1 4 4 C 1.50706 * 109.47048 * 293.95783 * 3 2 1 5 5 H 1.08003 * 119.99561 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99876 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99671 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00235 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47030 * 90.00448 * 8 6 4 10 10 H 1.48501 * 109.47063 * 210.00291 * 8 6 4 11 11 H 1.48500 * 109.47251 * 330.00477 * 8 6 4 12 12 C 1.46903 * 110.99773 * 123.95344 * 2 1 3 13 13 C 1.53005 * 109.47321 * 75.56535 * 12 2 1 14 14 H 1.08996 * 109.24664 * 303.80704 * 13 12 2 15 15 C 1.52737 * 109.25157 * 63.27606 * 13 12 2 16 16 C 1.53330 * 108.37346 * 171.34566 * 15 13 12 17 17 C 1.52728 * 108.37414 * 290.07480 * 16 15 13 18 18 C 1.50635 * 110.55735 * 51.09040 * 17 16 15 19 19 C 1.38959 * 117.71514 * 162.54895 * 18 17 16 20 20 C 1.37930 * 120.54037 * 179.77562 * 19 18 17 21 21 C 1.38267 * 119.76550 * 359.93388 * 20 19 18 22 22 C 1.37934 * 119.77288 * 0.10734 * 21 20 19 23 23 C 1.37619 * 122.60529 * 342.39802 * 18 17 16 24 24 H 1.08999 * 109.47035 * 297.76756 * 1 2 3 25 25 H 1.08998 * 109.47444 * 57.76951 * 1 2 3 26 26 H 1.09005 * 109.47320 * 177.77548 * 1 2 3 27 27 H 1.09006 * 109.47031 * 53.95236 * 3 2 1 28 28 H 1.08995 * 109.47551 * 173.95448 * 3 2 1 29 29 H 0.96997 * 119.99853 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47721 * 315.56203 * 12 2 1 31 31 H 1.09008 * 109.46865 * 195.56318 * 12 2 1 32 32 H 1.08993 * 109.68629 * 51.62277 * 15 13 12 33 33 H 1.09008 * 109.68105 * 291.06606 * 15 13 12 34 34 H 1.09002 * 109.68201 * 170.35004 * 16 15 13 35 35 H 1.08996 * 109.68222 * 49.79772 * 16 15 13 36 36 H 1.08995 * 109.25716 * 171.36382 * 17 16 15 37 37 H 1.09003 * 109.25244 * 290.83296 * 17 16 15 38 38 H 1.08007 * 119.73646 * 359.70082 * 19 18 17 39 39 H 1.07995 * 120.11690 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.11087 * 180.12806 * 21 20 19 41 41 H 1.07996 * 119.72352 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0745 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 1.7152 3.9386 -2.6622 8 14 3.0010 4.2757 -0.2315 9 1 4.4534 4.0622 -0.4559 10 1 2.6938 5.7256 -0.3238 11 1 2.6298 3.7759 1.1167 12 6 1.9954 -0.7660 1.1376 13 6 1.8424 -2.2627 0.8593 14 1 0.7956 -2.4845 0.6519 15 6 2.6872 -2.6377 -0.3567 16 6 2.6946 -4.1654 -0.4876 17 6 3.5156 -4.7432 0.6634 18 6 3.0479 -4.1818 1.9807 19 6 3.4167 -4.8566 3.1381 20 6 3.0244 -4.3912 4.3759 21 6 2.2590 -3.2432 4.4666 22 6 1.8913 -2.5727 3.3187 23 6 2.2837 -3.0409 2.0711 24 1 -0.3633 0.4788 0.9093 25 1 -0.3634 0.5481 -0.8693 26 1 -0.3634 -1.0269 -0.0399 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3443 0.1082 29 1 1.9898 4.8546 -2.8242 30 1 1.4406 -0.5056 2.0390 31 1 3.0499 -0.5286 1.2787 32 1 3.7064 -2.2759 -0.2215 33 1 2.2557 -2.1944 -1.2543 34 1 3.1444 -4.4502 -1.4387 35 1 1.6735 -4.5432 -0.4361 36 1 3.4048 -5.8274 0.6751 37 1 4.5659 -4.4907 0.5178 38 1 4.0144 -5.7534 3.0680 39 1 3.3145 -4.9212 5.2710 40 1 1.9505 -2.8727 5.4330 41 1 1.2932 -1.6763 3.3904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104306180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:42 Heat of formation + Delta-G solvation = 13.366171 kcal Electronic energy + Delta-G solvation = -19381.563599 eV Core-core repulsion = 16646.351623 eV Total energy + Delta-G solvation = -2735.211976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16153 -37.13092 -35.55032 -33.10182 -32.11859 -30.12265 -29.22941 -27.74142 -26.30070 -24.08490 -22.83645 -22.51571 -21.08712 -19.84941 -19.13550 -16.80807 -16.53669 -15.56355 -15.35746 -14.70256 -14.55482 -14.33480 -13.96777 -13.52557 -13.38099 -13.14956 -12.77335 -12.60524 -12.32418 -12.18917 -11.90079 -11.62494 -11.41726 -11.30307 -11.04196 -10.80956 -10.72906 -10.51811 -10.24801 -10.09756 -10.05477 -9.80217 -9.26822 -8.71391 -8.55893 -8.46746 -7.33118 -6.04318 -4.01280 1.40093 1.42021 3.28934 3.36321 3.38527 3.78184 4.42840 4.62453 4.71780 4.88324 4.99752 5.04433 5.10486 5.22526 5.28181 5.34959 5.45527 5.48887 5.56916 5.70241 5.78532 5.94604 5.96942 6.02249 6.05218 6.08926 6.18071 6.21463 6.28266 6.33893 6.47474 6.53796 6.64458 6.71650 6.74409 6.78924 6.88253 7.00782 7.08356 7.60658 7.92066 8.07448 8.67259 9.04378 9.57823 11.08854 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.004890 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.715686 B = 5724.463891 C = 6156.370737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.528 5.528 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.059 3.941 13 C -0.043 4.043 14 H 0.080 0.920 15 C -0.102 4.102 16 C -0.122 4.122 17 C -0.080 4.080 18 C -0.075 4.075 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.061 4.061 24 H 0.010 0.990 25 H 0.079 0.921 26 H 0.047 0.953 27 H -0.013 1.013 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -17.418 11.405 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.252 5.252 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.070 4.070 13 C -0.062 4.062 14 H 0.098 0.902 15 C -0.140 4.140 16 C -0.159 4.159 17 C -0.117 4.117 18 C -0.075 4.075 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.062 4.062 24 H 0.029 0.971 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.005 0.995 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.194 -17.454 10.868 20.678 hybrid contribution 0.298 1.064 1.577 1.925 sum 2.492 -16.390 12.444 20.729 Atomic orbital electron populations 1.22277 0.88397 0.99659 1.00920 1.61858 1.07209 1.16214 1.39887 1.20197 0.94809 0.84231 0.97208 1.21041 1.35499 0.97172 1.00845 0.90095 1.24890 0.95817 0.97374 0.95236 1.69893 1.46999 1.13280 1.23845 0.86887 0.80944 0.79294 0.82782 1.20147 1.21221 1.19350 1.22238 1.00097 0.92331 0.92330 1.20043 1.00094 0.93967 0.92052 0.90171 1.21456 1.00155 0.93856 0.98520 1.21600 1.00002 0.96895 0.97407 1.20486 1.00012 0.99475 0.91714 1.19652 0.97729 0.94994 0.95127 1.21128 1.00805 1.00093 0.92254 1.20995 0.99302 0.97058 0.97305 1.21045 0.99138 0.95974 0.98229 1.21310 1.00426 0.99968 0.92112 1.19736 0.96821 0.94675 0.94945 0.97126 0.90223 0.93385 0.99543 0.95916 0.92700 0.95454 0.91522 0.92000 0.89704 0.91597 0.91997 0.91319 0.90789 0.86548 0.86533 0.86451 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.20 60.06 0.55 1.24 16 2 N -0.53 -10.87 4.22 -244.36 -1.03 -11.90 16 3 C 0.16 3.94 3.77 -4.98 -0.02 3.92 16 4 C -0.51 -14.38 9.04 -34.44 -0.31 -14.69 16 5 H 0.08 2.48 7.36 -52.48 -0.39 2.10 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 8 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 12 C 0.06 1.01 4.02 -3.82 -0.02 0.99 16 13 C -0.04 -0.63 2.30 -91.94 -0.21 -0.84 16 14 H 0.08 1.18 6.76 -51.93 -0.35 0.83 16 15 C -0.10 -1.47 5.01 -26.70 -0.13 -1.60 16 16 C -0.12 -1.41 5.98 -26.70 -0.16 -1.57 16 17 C -0.08 -0.86 5.67 -28.05 -0.16 -1.02 16 18 C -0.07 -0.94 5.74 -104.61 -0.60 -1.54 16 19 C -0.12 -1.40 9.61 -39.43 -0.38 -1.78 16 20 C -0.13 -1.39 10.05 -39.68 -0.40 -1.79 16 21 C -0.13 -1.45 10.05 -39.68 -0.40 -1.85 16 22 C -0.12 -1.57 9.03 -39.45 -0.36 -1.93 16 23 C -0.06 -0.84 5.42 -104.63 -0.57 -1.41 16 24 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 25 H 0.08 1.68 6.80 -51.93 -0.35 1.33 16 26 H 0.05 0.78 6.75 -51.93 -0.35 0.43 16 27 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 28 H 0.02 0.56 7.26 -51.93 -0.38 0.18 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.03 0.45 6.05 -51.93 -0.31 0.14 16 31 H 0.07 1.19 7.74 -51.92 -0.40 0.79 16 32 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.08 1.37 7.96 -51.92 -0.41 0.95 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.12 1.05 8.05 -52.48 -0.42 0.63 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.56 6.27 -52.49 -0.33 1.23 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -30.23 318.06 -10.00 -40.23 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.61 Total: -1.25 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.25 Total: -21.99 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.26 Total: -38.74 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.23 -10.00 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104306180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.593 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds