Wall clock time and date at job start Mon Mar 30 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46893 * 111.00389 * 2 1 4 4 C 1.50706 * 109.47048 * 293.95783 * 3 2 1 5 5 H 1.08003 * 119.99561 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99876 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99671 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00235 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47030 * 90.00448 * 8 6 4 10 10 H 1.48501 * 109.47063 * 210.00291 * 8 6 4 11 11 H 1.48500 * 109.47251 * 330.00477 * 8 6 4 12 12 C 1.46903 * 110.99773 * 123.95344 * 2 1 3 13 13 C 1.53005 * 109.47321 * 75.56535 * 12 2 1 14 14 H 1.08996 * 109.24664 * 303.80704 * 13 12 2 15 15 C 1.52737 * 109.25157 * 63.27606 * 13 12 2 16 16 C 1.53330 * 108.37346 * 171.34566 * 15 13 12 17 17 C 1.52728 * 108.37414 * 290.07480 * 16 15 13 18 18 C 1.50635 * 110.55735 * 51.09040 * 17 16 15 19 19 C 1.38959 * 117.71514 * 162.54895 * 18 17 16 20 20 C 1.37930 * 120.54037 * 179.77562 * 19 18 17 21 21 C 1.38267 * 119.76550 * 359.93388 * 20 19 18 22 22 C 1.37934 * 119.77288 * 0.10734 * 21 20 19 23 23 C 1.37619 * 122.60529 * 342.39802 * 18 17 16 24 24 H 1.08999 * 109.47035 * 297.76756 * 1 2 3 25 25 H 1.08998 * 109.47444 * 57.76951 * 1 2 3 26 26 H 1.09005 * 109.47320 * 177.77548 * 1 2 3 27 27 H 1.09006 * 109.47031 * 53.95236 * 3 2 1 28 28 H 1.08995 * 109.47551 * 173.95448 * 3 2 1 29 29 H 0.96997 * 119.99853 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47721 * 315.56203 * 12 2 1 31 31 H 1.09008 * 109.46865 * 195.56318 * 12 2 1 32 32 H 1.08993 * 109.68629 * 51.62277 * 15 13 12 33 33 H 1.09008 * 109.68105 * 291.06606 * 15 13 12 34 34 H 1.09002 * 109.68201 * 170.35004 * 16 15 13 35 35 H 1.08996 * 109.68222 * 49.79772 * 16 15 13 36 36 H 1.08995 * 109.25716 * 171.36382 * 17 16 15 37 37 H 1.09003 * 109.25244 * 290.83296 * 17 16 15 38 38 H 1.08007 * 119.73646 * 359.70082 * 19 18 17 39 39 H 1.07995 * 120.11690 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.11087 * 180.12806 * 21 20 19 41 41 H 1.07996 * 119.72352 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0745 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 1.7152 3.9386 -2.6622 8 14 3.0010 4.2757 -0.2315 9 1 4.4534 4.0622 -0.4559 10 1 2.6938 5.7256 -0.3238 11 1 2.6298 3.7759 1.1167 12 6 1.9954 -0.7660 1.1376 13 6 1.8424 -2.2627 0.8593 14 1 0.7956 -2.4845 0.6519 15 6 2.6872 -2.6377 -0.3567 16 6 2.6946 -4.1654 -0.4876 17 6 3.5156 -4.7432 0.6634 18 6 3.0479 -4.1818 1.9807 19 6 3.4167 -4.8566 3.1381 20 6 3.0244 -4.3912 4.3759 21 6 2.2590 -3.2432 4.4666 22 6 1.8913 -2.5727 3.3187 23 6 2.2837 -3.0409 2.0711 24 1 -0.3633 0.4788 0.9093 25 1 -0.3634 0.5481 -0.8693 26 1 -0.3634 -1.0269 -0.0399 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3443 0.1082 29 1 1.9898 4.8546 -2.8242 30 1 1.4406 -0.5056 2.0390 31 1 3.0499 -0.5286 1.2787 32 1 3.7064 -2.2759 -0.2215 33 1 2.2557 -2.1944 -1.2543 34 1 3.1444 -4.4502 -1.4387 35 1 1.6735 -4.5432 -0.4361 36 1 3.4048 -5.8274 0.6751 37 1 4.5659 -4.4907 0.5178 38 1 4.0144 -5.7534 3.0680 39 1 3.3145 -4.9212 5.2710 40 1 1.9505 -2.8727 5.4330 41 1 1.2932 -1.6763 3.3904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104306180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:42 Heat of formation + Delta-G solvation = -3.287323 kcal Electronic energy + Delta-G solvation = -19382.285749 eV Core-core repulsion = 16646.351623 eV Total energy + Delta-G solvation = -2735.934126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14571 -38.56211 -36.67822 -34.81032 -33.68374 -31.05113 -30.50030 -29.46618 -27.69419 -25.62199 -23.87460 -23.53485 -22.58190 -21.30897 -20.14331 -18.96601 -17.52950 -16.73748 -16.46434 -16.32720 -15.96510 -15.77105 -15.12664 -14.93597 -14.60472 -14.34306 -14.16376 -14.08151 -13.60955 -13.46300 -13.20588 -13.01092 -12.71701 -12.58860 -12.39862 -12.30077 -12.18254 -11.93756 -11.85358 -11.65917 -11.47383 -11.07535 -11.04711 -10.78659 -9.60957 -9.39932 -8.99101 -8.28685 -6.31576 0.51326 0.52003 1.33471 1.34202 1.44889 2.33324 2.87922 3.04330 3.21902 3.78351 3.87933 3.88299 4.09462 4.18729 4.31111 4.32281 4.38263 4.45627 4.51206 4.58864 4.65322 4.71813 4.75300 4.84005 4.89503 4.94267 5.02161 5.06163 5.09782 5.16704 5.19954 5.24989 5.31919 5.46180 5.52434 5.54924 5.66775 5.70543 5.83787 5.99449 6.19076 6.36316 6.64764 6.74641 7.32015 8.87874 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.004890 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.715686 B = 5724.463891 C = 6156.370737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.540 5.540 3 C 0.172 3.828 4 C -0.514 4.514 5 H 0.040 0.960 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.255 1.255 12 C 0.063 3.937 13 C -0.033 4.033 14 H 0.077 0.923 15 C -0.101 4.101 16 C -0.116 4.116 17 C -0.077 4.077 18 C -0.086 4.086 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.082 4.082 24 H 0.017 0.983 25 H 0.049 0.951 26 H 0.076 0.924 27 H -0.015 1.015 28 H 0.024 0.976 29 H 0.267 0.733 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 -19.207 13.941 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.045 3.955 4 C -0.552 4.552 5 H 0.059 0.941 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.768 3.232 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.178 1.178 12 C -0.065 4.065 13 C -0.051 4.051 14 H 0.095 0.905 15 C -0.139 4.139 16 C -0.153 4.153 17 C -0.114 4.114 18 C -0.086 4.086 19 C -0.145 4.145 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.082 4.082 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.003 0.997 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.346 -19.270 13.413 23.716 hybrid contribution -0.108 1.537 0.765 1.720 sum 3.238 -17.733 14.178 22.934 Atomic orbital electron populations 1.22214 0.87566 1.01108 0.99799 1.61764 1.08088 1.14364 1.42171 1.19952 0.94837 0.86022 0.94720 1.21252 1.34801 0.97473 1.01691 0.94128 1.25798 0.96991 0.98410 0.97556 1.70042 1.48633 1.13920 1.26182 0.85764 0.79520 0.77797 0.80159 1.19037 1.20571 1.17849 1.22266 0.99373 0.93555 0.91293 1.19884 1.00031 0.92218 0.92979 0.90503 1.21389 0.99123 0.96073 0.97304 1.21553 1.00599 0.94510 0.98651 1.20509 0.99841 1.00654 0.90399 1.19895 0.97483 0.94751 0.96461 1.21451 1.00569 1.00676 0.91846 1.21377 0.98198 0.96613 0.98346 1.21322 0.98963 0.96161 0.98505 1.21388 1.01061 1.00351 0.92643 1.19667 0.98495 0.95639 0.94407 0.96429 0.93194 0.90493 0.99731 0.95782 0.92424 0.94559 0.92344 0.93090 0.92224 0.90451 0.91813 0.89050 0.90341 0.84068 0.83816 0.84581 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.20 127.69 1.17 2.77 16 2 N -0.54 -22.57 4.22 -927.03 -3.91 -26.48 16 3 C 0.17 8.44 3.77 85.56 0.32 8.76 16 4 C -0.51 -30.10 9.04 25.60 0.23 -29.87 16 5 H 0.04 2.64 7.36 -2.91 -0.02 2.62 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.95 -59.65 13.96 21.45 0.30 -59.36 16 8 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 12 C 0.06 2.15 4.02 86.30 0.35 2.50 16 13 C -0.03 -0.94 2.30 -11.65 -0.03 -0.97 16 14 H 0.08 2.23 6.76 -2.39 -0.02 2.21 16 15 C -0.10 -2.90 5.01 30.62 0.15 -2.75 16 16 C -0.12 -2.52 5.98 30.61 0.18 -2.34 16 17 C -0.08 -1.47 5.67 29.74 0.17 -1.31 16 18 C -0.09 -1.94 5.74 -19.86 -0.11 -2.06 16 19 C -0.13 -2.42 9.61 22.37 0.21 -2.21 16 20 C -0.13 -2.32 10.05 22.20 0.22 -2.10 16 21 C -0.13 -2.70 10.05 22.20 0.22 -2.48 16 22 C -0.14 -3.37 9.03 22.36 0.20 -3.17 16 23 C -0.08 -2.12 5.42 -19.87 -0.11 -2.23 16 24 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 25 H 0.05 2.20 6.80 -2.39 -0.02 2.19 16 26 H 0.08 2.48 6.75 -2.38 -0.02 2.47 16 27 H -0.01 -0.74 7.18 -2.38 -0.02 -0.75 16 28 H 0.02 1.17 7.26 -2.39 -0.02 1.16 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.04 1.18 6.05 -2.39 -0.01 1.16 16 31 H 0.06 2.07 7.74 -2.38 -0.02 2.05 16 32 H 0.05 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.06 1.98 7.96 -2.38 -0.02 1.96 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.09 1.35 8.13 -2.39 -0.02 1.33 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.14 1.93 8.05 -2.91 -0.02 1.91 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.12 2.89 6.27 -2.91 -0.02 2.87 16 Total: -1.00 -66.45 318.06 2.86 -63.58 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.93 Total: 12.07 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 3.66 Total: -36.40 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.61 Total: -85.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -66.45 2.86 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104306180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.295 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds