Wall clock time and date at job start Mon Mar 30 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46968 * 2 1 4 4 C 1.50707 * 109.47037 * 119.99307 * 2 1 3 5 5 H 1.08002 * 119.99743 * 120.00209 * 4 2 1 6 6 C 1.37871 * 120.00013 * 299.99843 * 4 2 1 7 7 N 1.31517 * 120.00285 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47333 * 90.00171 * 8 6 4 10 10 H 1.48502 * 109.47334 * 210.00335 * 8 6 4 11 11 H 1.48504 * 109.47230 * 330.00268 * 8 6 4 12 12 N 1.46895 * 109.47103 * 239.99346 * 2 1 3 13 13 C 1.46903 * 111.00153 * 154.62058 * 12 2 1 14 14 H 1.09009 * 109.46569 * 36.28313 * 13 12 2 15 15 C 1.50695 * 109.47367 * 156.28061 * 13 12 2 16 16 C 1.38234 * 120.00159 * 220.00637 * 15 13 12 17 17 C 1.38230 * 120.00100 * 180.02562 * 16 15 13 18 18 C 1.38231 * 120.00110 * 359.94638 * 17 16 15 19 19 C 1.38233 * 119.99987 * 0.28062 * 18 17 16 20 20 C 1.38236 * 119.99755 * 39.97712 * 15 13 12 21 21 C 1.52998 * 109.47132 * 276.28236 * 13 12 2 22 22 C 1.53779 * 113.61474 * 272.74400 * 21 13 12 23 23 C 1.53779 * 87.07763 * 220.01897 * 22 21 13 24 24 C 1.53777 * 87.08541 * 25.43490 * 23 22 21 25 25 H 1.08999 * 109.46848 * 297.69352 * 1 2 3 26 26 H 1.08998 * 109.47176 * 57.69333 * 1 2 3 27 27 H 1.09000 * 109.46826 * 177.69740 * 1 2 3 28 28 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 29 29 H 1.00903 * 111.00369 * 278.57662 * 12 2 1 30 30 H 1.08006 * 119.99782 * 359.97106 * 16 15 13 31 31 H 1.08002 * 120.00266 * 179.97438 * 17 16 15 32 32 H 1.08000 * 120.00485 * 180.02562 * 18 17 16 33 33 H 1.08004 * 120.00103 * 179.72612 * 19 18 17 34 34 H 1.07995 * 120.00320 * 0.02562 * 20 15 13 35 35 H 1.09001 * 112.85009 * 44.05404 * 21 13 12 36 36 H 1.08994 * 113.61369 * 334.57254 * 22 21 13 37 37 H 1.08999 * 113.61104 * 105.47422 * 22 21 13 38 38 H 1.09006 * 113.61613 * 270.87922 * 23 22 21 39 39 H 1.09010 * 113.68687 * 139.99809 * 23 22 21 40 40 H 1.09002 * 113.61331 * 220.02189 * 24 23 22 41 41 H 1.08991 * 113.61782 * 89.11471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3226 -1.1191 4.0081 9 1 3.6305 -0.5435 4.4120 10 1 1.3445 -0.9485 5.1124 11 1 2.4881 -2.5650 3.7125 12 7 2.0197 -0.6926 -1.1993 13 6 3.3634 -0.2253 -1.5655 14 1 3.9366 -0.0225 -0.6607 15 6 4.0616 -1.2875 -2.3748 16 6 5.4041 -1.5436 -2.1677 17 6 6.0446 -2.5176 -2.9105 18 6 5.3424 -3.2364 -3.8597 19 6 4.0010 -2.9772 -4.0701 20 6 3.3592 -2.0064 -3.3240 21 6 3.2496 1.0553 -2.3949 22 6 3.0825 0.8003 -3.9021 23 6 4.0326 1.9881 -4.1285 24 6 4.6075 1.6929 -2.7331 25 1 -0.3633 0.4776 0.9099 26 1 -0.3633 0.5492 -0.8686 27 1 -0.3633 -1.0269 -0.0413 28 1 0.7082 1.1612 3.4843 29 1 2.0078 -1.6932 -1.0693 30 1 5.9528 -0.9819 -1.4261 31 1 7.0936 -2.7174 -2.7490 32 1 5.8426 -3.9978 -4.4398 33 1 3.4533 -3.5358 -4.8148 34 1 2.3104 -1.8064 -3.4858 35 1 2.5255 1.7608 -1.9871 36 1 3.4915 -0.1549 -4.2313 37 1 2.0698 0.9758 -4.2650 38 1 3.5220 2.9489 -4.1961 39 1 4.7462 1.8302 -4.9372 40 1 4.8259 2.5891 -2.1523 41 1 5.4335 0.9818 -2.7427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104696602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:15 Heat of formation + Delta-G solvation = 40.135118 kcal Electronic energy + Delta-G solvation = -19844.734049 eV Core-core repulsion = 17110.682862 eV Total energy + Delta-G solvation = -2734.051187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97888 -37.67331 -35.54105 -32.79642 -30.93812 -30.67898 -28.31660 -25.96583 -25.24265 -24.98330 -22.89449 -22.18626 -20.45220 -19.94109 -18.63986 -16.67177 -16.23018 -15.41123 -15.10188 -15.04766 -14.58333 -14.09148 -13.73649 -13.29459 -13.01839 -12.90887 -12.53199 -12.19794 -11.94620 -11.72952 -11.40257 -11.28236 -11.01795 -10.93638 -10.81850 -10.64564 -10.31456 -10.17483 -10.03880 -9.83980 -9.73664 -9.67484 -9.06708 -8.60239 -8.38907 -8.31772 -7.25850 -5.99420 -4.11727 1.64187 1.66831 3.26688 3.34043 3.37326 4.06685 4.40007 4.91559 5.02534 5.13043 5.15493 5.19579 5.22133 5.27748 5.34495 5.45946 5.65495 5.81495 5.87493 5.96436 6.12077 6.15304 6.21545 6.25253 6.30666 6.30910 6.39648 6.50965 6.69463 6.73869 6.77831 6.91719 6.98043 7.02431 7.17376 7.29325 7.33354 7.53540 7.75736 8.09914 8.17859 8.33796 8.66840 9.01195 9.56201 11.01429 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.006602 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.744902 B = 4240.015165 C = 4877.557982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.209 3.791 3 H 0.033 0.967 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.682 5.682 13 C 0.136 3.864 14 H 0.056 0.944 15 C -0.064 4.064 16 C -0.117 4.117 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.098 4.098 21 C -0.084 4.084 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.141 4.141 25 H 0.081 0.919 26 H 0.012 0.988 27 H 0.023 0.977 28 H 0.261 0.739 29 H 0.330 0.670 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 -2.606 -12.484 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.101 3.899 3 H 0.051 0.949 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.311 5.311 13 C 0.026 3.974 14 H 0.073 0.927 15 C -0.064 4.064 16 C -0.136 4.136 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.116 4.116 21 C -0.103 4.103 22 C -0.176 4.176 23 C -0.181 4.181 24 C -0.179 4.179 25 H 0.100 0.900 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.818 -2.046 -12.767 14.617 hybrid contribution 0.915 -0.904 1.752 2.173 sum 7.732 -2.950 -11.015 13.778 Atomic orbital electron populations 1.21678 0.97838 0.98647 1.00142 1.19156 0.92277 0.94126 0.84345 0.94895 1.21861 1.31674 1.12733 0.91964 0.92934 1.24914 0.94837 0.94857 0.98873 1.69880 1.36371 1.22807 1.23409 0.86678 0.78630 0.80156 0.83031 1.20772 1.21147 1.20013 1.61019 1.20517 1.09695 1.39902 1.20279 0.90823 0.91191 0.95135 0.92659 1.20133 0.93620 0.96476 0.96179 1.21096 0.94617 0.98160 0.99711 1.21029 0.99518 0.96895 0.96957 1.21025 0.94810 1.00163 0.99003 1.21128 0.94846 0.98541 1.00247 1.21121 1.00600 0.94846 0.95007 1.22440 0.96575 0.96528 0.94747 1.23191 0.99141 0.98465 0.96775 1.22784 0.99297 0.98887 0.97102 1.22991 0.97812 1.00470 0.96667 0.90017 0.96882 0.95804 0.92924 0.85347 0.86409 0.86726 0.86871 0.86590 0.85024 0.88890 0.89246 0.92107 0.90857 0.92391 0.92066 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.33 37.16 0.35 -2.70 16 2 C 0.21 5.14 2.37 -68.86 -0.16 4.98 16 3 H 0.03 0.89 7.17 -51.93 -0.37 0.52 16 4 C -0.54 -14.64 8.28 -34.44 -0.29 -14.93 16 5 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.09 11.30 55.43 0.63 -24.47 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -14.07 5.42 -102.17 -0.55 -14.62 16 13 C 0.14 2.50 2.19 -68.87 -0.15 2.35 16 14 H 0.06 1.17 7.52 -51.92 -0.39 0.78 16 15 C -0.06 -1.02 3.47 -104.63 -0.36 -1.38 16 16 C -0.12 -1.75 8.54 -39.59 -0.34 -2.09 16 17 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 18 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 19 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 20 C -0.10 -1.45 6.34 -39.58 -0.25 -1.70 16 21 C -0.08 -1.41 3.70 -89.81 -0.33 -1.74 16 22 C -0.14 -2.04 6.91 -25.92 -0.18 -2.22 16 23 C -0.14 -1.90 8.08 -25.92 -0.21 -2.11 16 24 C -0.14 -2.06 7.48 -25.92 -0.19 -2.26 16 25 H 0.08 2.19 6.01 -51.93 -0.31 1.87 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.93 7.72 -39.29 -0.30 6.62 16 30 H 0.12 1.69 8.04 -52.48 -0.42 1.27 16 31 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.13 1.99 7.58 -52.49 -0.40 1.59 16 35 H 0.09 1.75 7.52 -51.93 -0.39 1.36 16 36 H 0.09 1.31 4.57 -51.93 -0.24 1.07 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.11 6.62 -51.93 -0.34 0.77 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -27.42 321.55 -10.03 -37.44 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.52 Total: 8.74 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -3.41 Total: -28.18 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.07 Total: -39.09 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.42 -10.03 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104696602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.578 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds