Wall clock time and date at job start Mon Mar 30 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46968 * 2 1 4 4 C 1.50707 * 109.47037 * 119.99307 * 2 1 3 5 5 H 1.08002 * 119.99743 * 120.00209 * 4 2 1 6 6 C 1.37871 * 120.00013 * 299.99843 * 4 2 1 7 7 N 1.31517 * 120.00285 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47333 * 90.00171 * 8 6 4 10 10 H 1.48502 * 109.47334 * 210.00335 * 8 6 4 11 11 H 1.48504 * 109.47230 * 330.00268 * 8 6 4 12 12 N 1.46895 * 109.47103 * 239.99346 * 2 1 3 13 13 C 1.46903 * 111.00153 * 154.62058 * 12 2 1 14 14 H 1.09009 * 109.46569 * 36.28313 * 13 12 2 15 15 C 1.50695 * 109.47367 * 156.28061 * 13 12 2 16 16 C 1.38234 * 120.00159 * 220.00637 * 15 13 12 17 17 C 1.38230 * 120.00100 * 180.02562 * 16 15 13 18 18 C 1.38231 * 120.00110 * 359.94638 * 17 16 15 19 19 C 1.38233 * 119.99987 * 0.28062 * 18 17 16 20 20 C 1.38236 * 119.99755 * 39.97712 * 15 13 12 21 21 C 1.52998 * 109.47132 * 276.28236 * 13 12 2 22 22 C 1.53779 * 113.61474 * 272.74400 * 21 13 12 23 23 C 1.53779 * 87.07763 * 220.01897 * 22 21 13 24 24 C 1.53777 * 87.08541 * 25.43490 * 23 22 21 25 25 H 1.08999 * 109.46848 * 297.69352 * 1 2 3 26 26 H 1.08998 * 109.47176 * 57.69333 * 1 2 3 27 27 H 1.09000 * 109.46826 * 177.69740 * 1 2 3 28 28 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 29 29 H 1.00903 * 111.00369 * 278.57662 * 12 2 1 30 30 H 1.08006 * 119.99782 * 359.97106 * 16 15 13 31 31 H 1.08002 * 120.00266 * 179.97438 * 17 16 15 32 32 H 1.08000 * 120.00485 * 180.02562 * 18 17 16 33 33 H 1.08004 * 120.00103 * 179.72612 * 19 18 17 34 34 H 1.07995 * 120.00320 * 0.02562 * 20 15 13 35 35 H 1.09001 * 112.85009 * 44.05404 * 21 13 12 36 36 H 1.08994 * 113.61369 * 334.57254 * 22 21 13 37 37 H 1.08999 * 113.61104 * 105.47422 * 22 21 13 38 38 H 1.09006 * 113.61613 * 270.87922 * 23 22 21 39 39 H 1.09010 * 113.68687 * 139.99809 * 23 22 21 40 40 H 1.09002 * 113.61331 * 220.02189 * 24 23 22 41 41 H 1.08991 * 113.61782 * 89.11471 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3226 -1.1191 4.0081 9 1 3.6305 -0.5435 4.4120 10 1 1.3445 -0.9485 5.1124 11 1 2.4881 -2.5650 3.7125 12 7 2.0197 -0.6926 -1.1993 13 6 3.3634 -0.2253 -1.5655 14 1 3.9366 -0.0225 -0.6607 15 6 4.0616 -1.2875 -2.3748 16 6 5.4041 -1.5436 -2.1677 17 6 6.0446 -2.5176 -2.9105 18 6 5.3424 -3.2364 -3.8597 19 6 4.0010 -2.9772 -4.0701 20 6 3.3592 -2.0064 -3.3240 21 6 3.2496 1.0553 -2.3949 22 6 3.0825 0.8003 -3.9021 23 6 4.0326 1.9881 -4.1285 24 6 4.6075 1.6929 -2.7331 25 1 -0.3633 0.4776 0.9099 26 1 -0.3633 0.5492 -0.8686 27 1 -0.3633 -1.0269 -0.0413 28 1 0.7082 1.1612 3.4843 29 1 2.0078 -1.6932 -1.0693 30 1 5.9528 -0.9819 -1.4261 31 1 7.0936 -2.7174 -2.7490 32 1 5.8426 -3.9978 -4.4398 33 1 3.4533 -3.5358 -4.8148 34 1 2.3104 -1.8064 -3.4858 35 1 2.5255 1.7608 -1.9871 36 1 3.4915 -0.1549 -4.2313 37 1 2.0698 0.9758 -4.2650 38 1 3.5220 2.9489 -4.1961 39 1 4.7462 1.8302 -4.9372 40 1 4.8259 2.5891 -2.1523 41 1 5.4335 0.9818 -2.7427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104696602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:15 Heat of formation + Delta-G solvation = 26.580213 kcal Electronic energy + Delta-G solvation = -19845.321834 eV Core-core repulsion = 17110.682862 eV Total energy + Delta-G solvation = -2734.638972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21569 -38.81454 -37.31798 -34.59593 -32.52087 -31.76641 -29.88996 -27.44822 -27.14614 -26.39452 -24.13042 -23.31580 -21.93432 -21.56559 -19.93432 -18.61732 -17.44916 -16.85352 -16.69144 -16.36734 -16.03007 -15.41573 -15.23501 -14.78299 -14.41346 -14.14005 -14.00892 -13.66169 -13.30817 -13.23533 -13.02851 -12.89246 -12.77569 -12.49855 -12.32967 -12.14424 -12.07260 -11.78249 -11.60107 -11.31012 -11.17110 -11.01770 -10.92124 -10.51960 -9.67524 -9.45073 -9.06203 -8.08703 -6.30446 0.54974 0.59727 1.35096 1.36799 1.46251 2.37650 2.97902 3.12189 3.50014 3.78279 3.93190 3.96263 4.11282 4.18743 4.24822 4.28865 4.39629 4.68018 4.74323 4.77852 4.85857 4.89922 4.94517 4.98279 4.98802 5.08920 5.15321 5.20045 5.22290 5.26187 5.32056 5.44183 5.51733 5.64498 5.65826 5.70883 5.72905 5.87142 6.06176 6.16457 6.22209 6.38293 6.80605 6.98986 7.41281 8.88969 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.006602 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.744902 B = 4240.015165 C = 4877.557982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.556 4.556 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.670 5.670 13 C 0.142 3.858 14 H 0.017 0.983 15 C -0.080 4.080 16 C -0.132 4.132 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.127 4.127 20 C -0.107 4.107 21 C -0.096 4.096 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.137 4.137 25 H 0.057 0.943 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.327 0.673 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.686 -4.207 -14.095 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.596 4.596 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.196 1.196 12 N -0.299 5.299 13 C 0.032 3.968 14 H 0.035 0.965 15 C -0.081 4.081 16 C -0.151 4.151 17 C -0.142 4.142 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.167 4.167 23 C -0.167 4.167 24 C -0.175 4.175 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.261 -3.647 -14.392 16.990 hybrid contribution 0.498 -0.429 2.222 2.317 sum 8.759 -4.075 -12.170 15.538 Atomic orbital electron populations 1.21517 0.97632 0.98648 0.99458 1.18904 0.92395 0.92567 0.85344 0.98120 1.22107 1.31643 1.12659 0.93147 0.93574 1.25649 0.95046 0.95561 1.01682 1.70001 1.37158 1.23877 1.24077 0.85700 0.78145 0.79091 0.79576 1.20391 1.20527 1.19594 1.60956 1.22311 1.09130 1.37497 1.20193 0.89104 0.93097 0.94407 0.96476 1.19887 0.94259 0.96781 0.97124 1.21171 0.94271 0.99227 1.00427 1.21332 1.00780 0.95811 0.96295 1.21434 0.94533 1.00028 0.98354 1.21432 0.95397 0.97632 0.99984 1.21087 1.00310 0.95685 0.95405 1.22416 0.97656 0.95427 0.96045 1.23135 0.99567 0.99521 0.94493 1.22736 0.98913 0.98494 0.96540 1.22973 0.96618 1.00238 0.97710 0.92420 0.95579 0.95459 0.92814 0.85595 0.86926 0.84230 0.83603 0.83988 0.85829 0.91867 0.88695 0.92317 0.90144 0.90345 0.92224 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.33 71.98 0.67 -5.07 16 2 C 0.22 11.15 2.37 44.17 0.10 11.26 16 3 H 0.00 0.05 7.17 -2.39 -0.02 0.03 16 4 C -0.56 -30.93 8.28 25.60 0.21 -30.71 16 5 H 0.05 2.57 7.74 -2.91 -0.02 2.54 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -52.96 11.30 21.45 0.24 -52.72 16 8 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.67 -28.75 5.42 -477.14 -2.59 -31.33 16 13 C 0.14 5.47 2.19 44.17 0.10 5.56 16 14 H 0.02 0.78 7.52 -2.38 -0.02 0.76 16 15 C -0.08 -2.56 3.47 -19.87 -0.07 -2.63 16 16 C -0.13 -3.84 8.54 22.27 0.19 -3.65 16 17 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 18 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 19 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 20 C -0.11 -3.03 6.34 22.27 0.14 -2.89 16 21 C -0.10 -3.35 3.70 -10.27 -0.04 -3.39 16 22 C -0.13 -3.75 6.91 31.12 0.21 -3.53 16 23 C -0.13 -3.23 8.08 31.12 0.25 -2.98 16 24 C -0.14 -4.01 7.48 31.12 0.23 -3.77 16 25 H 0.06 3.18 6.01 -2.39 -0.01 3.17 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.33 14.15 7.72 -89.69 -0.69 13.46 16 30 H 0.11 3.28 8.04 -2.91 -0.02 3.25 16 31 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.12 3.66 7.58 -2.91 -0.02 3.64 16 35 H 0.06 2.55 7.52 -2.39 -0.02 2.53 16 36 H 0.09 2.66 4.57 -2.39 -0.01 2.65 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 2.34 6.62 -2.39 -0.02 2.32 16 Total: -1.00 -60.10 321.55 3.12 -56.98 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.31 Total: 28.86 kcal Atomic # 6 Polarization: -51.08 SS G_CDS: 3.13 Total: -47.95 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.34 Total: -84.06 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -60.10 3.12 -56.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104696602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.564 kcal (2) G-P(sol) polarization free energy of solvation -60.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds