Wall clock time and date at job start Mon Mar 30 2020 06:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50699 * 109.47405 * 239.99563 * 2 1 3 5 5 H 1.08001 * 120.00455 * 240.00025 * 4 2 1 6 6 C 1.37883 * 119.99421 * 60.00292 * 4 2 1 7 7 N 1.31515 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99466 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47262 * 60.00149 * 8 6 4 10 10 H 1.48505 * 109.47137 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47475 * 299.99731 * 8 6 4 12 12 N 1.46903 * 109.46738 * 119.99986 * 2 1 3 13 13 C 1.46906 * 110.99770 * 274.99957 * 12 2 1 14 14 H 1.08992 * 109.47459 * 35.00067 * 13 12 2 15 15 C 1.50701 * 109.46922 * 155.00349 * 13 12 2 16 16 C 1.38239 * 119.99913 * 39.72634 * 15 13 12 17 17 C 1.38238 * 119.99389 * 179.78997 * 16 15 13 18 18 C 1.38227 * 120.00421 * 0.43693 * 17 16 15 19 19 C 1.38237 * 120.00051 * 359.82010 * 18 17 16 20 20 C 1.38234 * 119.99953 * 359.96970 * 19 18 17 21 21 C 1.53002 * 109.47053 * 274.99984 * 13 12 2 22 22 C 1.53777 * 113.61475 * 277.49926 * 21 13 12 23 23 C 1.53782 * 87.08206 * 220.01885 * 22 21 13 24 24 C 1.53776 * 113.61390 * 179.97438 * 21 13 12 25 25 H 1.08993 * 109.47304 * 299.99823 * 1 2 3 26 26 H 1.09000 * 109.46817 * 60.00351 * 1 2 3 27 27 H 1.08999 * 109.47030 * 180.02562 * 1 2 3 28 28 H 0.96999 * 119.99666 * 180.02562 * 7 6 4 29 29 H 1.00896 * 111.00435 * 38.95222 * 12 2 1 30 30 H 1.07998 * 120.00063 * 359.97438 * 16 15 13 31 31 H 1.08007 * 119.99365 * 180.27757 * 17 16 15 32 32 H 1.07994 * 120.00303 * 179.83390 * 18 17 16 33 33 H 1.07997 * 120.00251 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.00529 * 180.02562 * 20 19 18 35 35 H 1.08998 * 112.84900 * 48.80767 * 21 13 12 36 36 H 1.08996 * 113.61806 * 334.56590 * 22 21 13 37 37 H 1.09001 * 113.61481 * 105.47149 * 22 21 13 38 38 H 1.09007 * 113.61498 * 270.88608 * 23 22 21 39 39 H 1.08998 * 113.69650 * 139.98873 * 23 22 21 40 40 H 1.09000 * 113.61803 * 254.53588 * 24 21 13 41 41 H 1.09005 * 113.61572 * 25.43896 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4201 -5.2204 11 1 3.8077 -1.1190 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2576 0.9330 2.2907 15 6 1.9785 -0.5676 3.6259 16 6 2.6282 -1.7822 3.7427 17 6 2.5364 -2.5049 4.9175 18 6 1.7876 -2.0175 5.9722 19 6 1.1336 -0.8054 5.8536 20 6 1.2289 -0.0805 4.6804 21 6 3.4111 0.9809 2.3225 22 6 4.5824 0.1909 2.9294 23 6 5.0439 1.5140 3.5628 24 6 3.5770 1.9707 3.4875 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7083 1.1608 -3.4844 29 1 1.4495 -1.4979 1.4101 30 1 3.2098 -2.1650 2.9171 31 1 3.0476 -3.4518 5.0103 32 1 1.7137 -2.5834 6.8890 33 1 0.5490 -0.4243 6.6778 34 1 0.7183 0.8666 4.5878 35 1 3.6334 1.4138 1.3472 36 1 4.2729 -0.5577 3.6587 37 1 5.2757 -0.2024 2.1859 38 1 5.7141 2.0923 2.9267 39 1 5.4159 1.4057 4.5816 40 1 3.4586 3.0139 3.1945 41 1 2.9924 1.7089 4.3696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104696605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:18 Heat of formation + Delta-G solvation = 42.768398 kcal Electronic energy + Delta-G solvation = -19776.403702 eV Core-core repulsion = 17042.466702 eV Total energy + Delta-G solvation = -2733.937000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03939 -37.70123 -35.63424 -32.82481 -30.96314 -30.74791 -28.21751 -25.99744 -25.16420 -25.08597 -22.98334 -22.24952 -20.63498 -20.02020 -18.59268 -16.72689 -16.05571 -15.32630 -15.23055 -15.09880 -14.54305 -14.11732 -13.81173 -13.39247 -13.13490 -12.80232 -12.35067 -12.31083 -11.99053 -11.74939 -11.68708 -11.30782 -10.98487 -10.93299 -10.82568 -10.62441 -10.49657 -10.14169 -10.04152 -9.95422 -9.74141 -9.67012 -8.96833 -8.65751 -8.39635 -8.32756 -7.19375 -5.95668 -3.98546 1.56715 1.60228 3.36003 3.39918 3.43270 3.99596 4.45807 4.88617 4.98691 5.10629 5.11700 5.16563 5.18305 5.31926 5.36030 5.38823 5.62403 5.74796 5.81057 5.96351 6.04809 6.13097 6.15681 6.19608 6.25141 6.29599 6.36643 6.48556 6.62908 6.68031 6.71152 6.77201 6.87409 6.91965 6.98741 7.15192 7.22941 7.42271 7.77288 7.92188 8.31409 8.57350 8.65467 9.08443 9.66563 11.11348 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.005736 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.311162 B = 4880.652131 C = 5253.255443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.674 5.674 13 C 0.132 3.868 14 H 0.043 0.957 15 C -0.067 4.067 16 C -0.097 4.097 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.084 4.084 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.004 0.996 26 H 0.088 0.912 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.326 0.674 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 -1.412 15.301 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.303 5.303 13 C 0.022 3.978 14 H 0.061 0.939 15 C -0.068 4.068 16 C -0.115 4.115 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.103 4.103 22 C -0.173 4.173 23 C -0.181 4.181 24 C -0.181 4.181 25 H 0.023 0.977 26 H 0.107 0.893 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.489 -1.209 14.964 15.413 hybrid contribution -0.784 -0.260 -0.677 1.068 sum 2.705 -1.469 14.288 14.616 Atomic orbital electron populations 1.22438 1.00898 0.99135 1.00382 1.19186 0.89386 0.94470 0.86439 0.94764 1.21107 1.30104 1.12358 0.89573 0.92040 1.24941 0.95385 0.95211 0.98977 1.69875 1.37326 1.23236 1.23357 0.86591 0.79155 0.79608 0.82172 1.20437 1.21527 1.20340 1.60900 1.57953 1.08645 1.02835 1.20358 0.96437 0.93384 0.87629 0.93886 1.20123 0.95844 0.95087 0.95726 1.21165 0.98544 0.94085 0.97673 1.21153 0.99756 0.99844 0.93853 1.21044 0.98586 0.96504 0.98737 1.21027 1.00313 0.95481 0.97620 1.21067 0.99370 0.99892 0.93405 1.22431 0.94239 0.95569 0.98033 1.23134 0.97910 0.96292 0.99964 1.22790 0.96447 0.98610 1.00220 1.23029 0.96776 0.98940 0.99354 0.97739 0.89304 0.95432 0.93084 0.85626 0.84742 0.86469 0.86791 0.86684 0.86531 0.88565 0.89364 0.91812 0.90796 0.92416 0.92171 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.25 2.38 -68.86 -0.16 5.09 16 3 H 0.03 0.93 7.24 -51.93 -0.38 0.56 16 4 C -0.49 -13.48 8.84 -34.44 -0.30 -13.79 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.67 -13.88 5.42 -102.16 -0.55 -14.44 16 13 C 0.13 2.34 2.20 -68.86 -0.15 2.19 16 14 H 0.04 0.82 6.98 -51.93 -0.36 0.46 16 15 C -0.07 -1.03 3.51 -104.62 -0.37 -1.40 16 16 C -0.10 -1.40 6.30 -39.58 -0.25 -1.65 16 17 C -0.13 -1.61 10.05 -39.59 -0.40 -2.01 16 18 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 19 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 20 C -0.12 -1.64 8.42 -39.58 -0.33 -1.97 16 21 C -0.08 -1.41 3.72 -89.81 -0.33 -1.75 16 22 C -0.14 -2.07 7.00 -25.92 -0.18 -2.25 16 23 C -0.14 -1.93 8.08 -25.90 -0.21 -2.14 16 24 C -0.14 -2.04 7.47 -25.90 -0.19 -2.23 16 25 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.33 6.63 7.72 -39.29 -0.30 6.32 16 30 H 0.13 2.05 7.45 -52.49 -0.39 1.66 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.51 8.04 -52.49 -0.42 1.09 16 35 H 0.10 1.87 7.61 -51.93 -0.39 1.48 16 36 H 0.09 1.31 4.49 -51.93 -0.23 1.08 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.07 6.34 -51.93 -0.33 0.74 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -27.79 320.24 -10.00 -37.79 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.44 Total: 8.44 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -3.44 Total: -28.10 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.07 Total: -39.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.79 -10.00 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104696605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.560 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds