Wall clock time and date at job start Mon Mar 30 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50699 * 109.47405 * 239.99563 * 2 1 3 5 5 H 1.08001 * 120.00455 * 240.00025 * 4 2 1 6 6 C 1.37883 * 119.99421 * 60.00292 * 4 2 1 7 7 N 1.31515 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99466 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47262 * 60.00149 * 8 6 4 10 10 H 1.48505 * 109.47137 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47475 * 299.99731 * 8 6 4 12 12 N 1.46903 * 109.46738 * 119.99986 * 2 1 3 13 13 C 1.46906 * 110.99770 * 274.99957 * 12 2 1 14 14 H 1.08992 * 109.47459 * 35.00067 * 13 12 2 15 15 C 1.50701 * 109.46922 * 155.00349 * 13 12 2 16 16 C 1.38239 * 119.99913 * 39.72634 * 15 13 12 17 17 C 1.38238 * 119.99389 * 179.78997 * 16 15 13 18 18 C 1.38227 * 120.00421 * 0.43693 * 17 16 15 19 19 C 1.38237 * 120.00051 * 359.82010 * 18 17 16 20 20 C 1.38234 * 119.99953 * 359.96970 * 19 18 17 21 21 C 1.53002 * 109.47053 * 274.99984 * 13 12 2 22 22 C 1.53777 * 113.61475 * 277.49926 * 21 13 12 23 23 C 1.53782 * 87.08206 * 220.01885 * 22 21 13 24 24 C 1.53776 * 113.61390 * 179.97438 * 21 13 12 25 25 H 1.08993 * 109.47304 * 299.99823 * 1 2 3 26 26 H 1.09000 * 109.46817 * 60.00351 * 1 2 3 27 27 H 1.08999 * 109.47030 * 180.02562 * 1 2 3 28 28 H 0.96999 * 119.99666 * 180.02562 * 7 6 4 29 29 H 1.00896 * 111.00435 * 38.95222 * 12 2 1 30 30 H 1.07998 * 120.00063 * 359.97438 * 16 15 13 31 31 H 1.08007 * 119.99365 * 180.27757 * 17 16 15 32 32 H 1.07994 * 120.00303 * 179.83390 * 18 17 16 33 33 H 1.07997 * 120.00251 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.00529 * 180.02562 * 20 19 18 35 35 H 1.08998 * 112.84900 * 48.80767 * 21 13 12 36 36 H 1.08996 * 113.61806 * 334.56590 * 22 21 13 37 37 H 1.09001 * 113.61481 * 105.47149 * 22 21 13 38 38 H 1.09007 * 113.61498 * 270.88608 * 23 22 21 39 39 H 1.08998 * 113.69650 * 139.98873 * 23 22 21 40 40 H 1.09000 * 113.61803 * 254.53588 * 24 21 13 41 41 H 1.09005 * 113.61572 * 25.43896 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4201 -5.2204 11 1 3.8077 -1.1190 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2576 0.9330 2.2907 15 6 1.9785 -0.5676 3.6259 16 6 2.6282 -1.7822 3.7427 17 6 2.5364 -2.5049 4.9175 18 6 1.7876 -2.0175 5.9722 19 6 1.1336 -0.8054 5.8536 20 6 1.2289 -0.0805 4.6804 21 6 3.4111 0.9809 2.3225 22 6 4.5824 0.1909 2.9294 23 6 5.0439 1.5140 3.5628 24 6 3.5770 1.9707 3.4875 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7083 1.1608 -3.4844 29 1 1.4495 -1.4979 1.4101 30 1 3.2098 -2.1650 2.9171 31 1 3.0476 -3.4518 5.0103 32 1 1.7137 -2.5834 6.8890 33 1 0.5490 -0.4243 6.6778 34 1 0.7183 0.8666 4.5878 35 1 3.6334 1.4138 1.3472 36 1 4.2729 -0.5577 3.6587 37 1 5.2757 -0.2024 2.1859 38 1 5.7141 2.0923 2.9267 39 1 5.4159 1.4057 4.5816 40 1 3.4586 3.0139 3.1945 41 1 2.9924 1.7089 4.3696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104696605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:17 Heat of formation + Delta-G solvation = 28.776433 kcal Electronic energy + Delta-G solvation = -19777.010439 eV Core-core repulsion = 17042.466702 eV Total energy + Delta-G solvation = -2734.543737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24585 -38.81599 -37.38221 -34.64054 -32.47925 -31.78406 -29.76712 -27.48552 -27.18098 -26.38701 -24.22435 -23.32200 -22.12231 -21.56441 -19.87095 -18.50436 -17.38041 -16.79394 -16.66116 -16.46951 -16.03394 -15.44353 -15.16851 -14.91264 -14.28736 -14.14837 -14.01029 -13.68556 -13.49338 -13.18460 -12.99627 -12.83665 -12.83211 -12.62586 -12.33763 -12.14359 -12.05981 -11.76810 -11.70348 -11.33398 -11.10157 -10.97815 -10.93936 -10.47099 -9.67702 -9.47776 -8.92051 -8.08571 -6.19262 0.53477 0.58930 1.42795 1.44417 1.52086 2.44228 2.96975 3.19753 3.47855 3.75891 3.92400 3.95743 4.07883 4.18112 4.24260 4.28434 4.39402 4.59633 4.71153 4.73664 4.76903 4.85510 4.86719 4.90474 4.97722 4.99072 5.08418 5.11770 5.19594 5.22779 5.26367 5.40507 5.51140 5.64317 5.68680 5.71270 5.72957 5.78979 5.89947 6.21133 6.29575 6.67705 6.85153 6.96092 7.50485 8.96916 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.005736 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.311162 B = 4880.652131 C = 5253.255443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.221 3.779 3 H 0.001 0.999 4 C -0.511 4.511 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.671 5.671 13 C 0.137 3.863 14 H 0.023 0.977 15 C -0.082 4.082 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.097 4.097 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.133 4.133 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 -2.496 17.566 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.113 3.887 3 H 0.019 0.981 4 C -0.550 4.550 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.301 5.301 13 C 0.028 3.972 14 H 0.041 0.959 15 C -0.082 4.082 16 C -0.127 4.127 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.169 4.169 23 C -0.169 4.169 24 C -0.170 4.170 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.814 -2.297 17.246 17.811 hybrid contribution -0.905 0.067 -1.309 1.593 sum 2.908 -2.230 15.937 16.352 Atomic orbital electron populations 1.22248 1.00470 0.99007 0.99797 1.18890 0.89531 0.92704 0.87620 0.98099 1.21404 1.30244 1.12358 0.90989 0.92750 1.25707 0.95519 0.95879 1.01840 1.70008 1.38113 1.24338 1.23933 0.85595 0.78601 0.78691 0.78592 1.19674 1.21052 1.19985 1.60770 1.57393 1.08969 1.02949 1.20299 0.96107 0.92812 0.88029 0.95886 1.19853 0.97863 0.95578 0.94915 1.21084 0.99049 0.94239 0.98358 1.21413 0.99635 1.00362 0.93116 1.21441 0.97067 0.96285 0.99448 1.21358 0.99934 0.95309 0.97483 1.21177 0.99268 1.00466 0.93751 1.22396 0.94736 0.97122 0.97400 1.23113 0.96755 0.97266 0.99775 1.22747 0.95893 0.96957 1.01281 1.22978 0.97577 0.98304 0.98182 0.96133 0.91939 0.95151 0.93090 0.85454 0.86291 0.84317 0.83653 0.83947 0.86223 0.92340 0.88528 0.93182 0.90497 0.90237 0.91889 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.92 71.98 0.64 -7.12 16 2 C 0.22 11.42 2.38 44.17 0.10 11.52 16 3 H 0.00 0.06 7.24 -2.39 -0.02 0.05 16 4 C -0.51 -28.84 8.84 25.60 0.23 -28.62 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -54.17 11.32 21.45 0.24 -53.93 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.67 -28.80 5.42 -477.14 -2.59 -31.38 16 13 C 0.14 5.02 2.20 44.17 0.10 5.12 16 14 H 0.02 0.92 6.98 -2.39 -0.02 0.91 16 15 C -0.08 -2.45 3.51 -19.86 -0.07 -2.52 16 16 C -0.11 -3.05 6.30 22.27 0.14 -2.91 16 17 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 18 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 19 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 20 C -0.13 -3.31 8.42 22.27 0.19 -3.12 16 21 C -0.10 -3.41 3.72 -10.27 -0.04 -3.45 16 22 C -0.13 -4.02 7.00 31.12 0.22 -3.80 16 23 C -0.13 -3.37 8.08 31.14 0.25 -3.11 16 24 C -0.13 -3.71 7.47 31.13 0.23 -3.48 16 25 H 0.02 0.91 7.43 -2.39 -0.02 0.89 16 26 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 27 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.33 13.70 7.72 -89.70 -0.69 13.00 16 30 H 0.12 3.65 7.45 -2.91 -0.02 3.63 16 31 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.12 2.94 8.04 -2.91 -0.02 2.92 16 35 H 0.06 2.46 7.61 -2.39 -0.02 2.44 16 36 H 0.10 2.80 4.49 -2.39 -0.01 2.79 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 2.30 6.34 -2.38 -0.02 2.29 16 Total: -1.00 -61.09 320.24 3.11 -57.98 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.31 Total: 28.32 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 3.11 Total: -47.72 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -2.34 Total: -85.31 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.09 3.11 -57.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104696605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.758 kcal (2) G-P(sol) polarization free energy of solvation -61.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds