Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.50703 * 109.46942 * 119.99481 * 2 1 3 5 5 H 1.08002 * 119.99797 * 120.00269 * 4 2 1 6 6 C 1.37878 * 120.00397 * 300.00022 * 4 2 1 7 7 N 1.31510 * 120.00252 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99647 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47393 * 89.99918 * 8 6 4 10 10 H 1.48504 * 109.47207 * 209.99895 * 8 6 4 11 11 H 1.48500 * 109.47447 * 329.99895 * 8 6 4 12 12 N 1.46901 * 109.47559 * 239.99642 * 2 1 3 13 13 C 1.46896 * 110.99913 * 84.99842 * 12 2 1 14 14 H 1.09002 * 109.47220 * 325.00418 * 13 12 2 15 15 C 1.50701 * 109.47239 * 205.00362 * 13 12 2 16 16 C 1.38238 * 119.99612 * 319.72864 * 15 13 12 17 17 C 1.38236 * 119.99607 * 179.81010 * 16 15 13 18 18 C 1.38235 * 120.00116 * 0.39532 * 17 16 15 19 19 C 1.38233 * 119.99985 * 359.86014 * 18 17 16 20 20 C 1.38223 * 120.00108 * 140.00251 * 15 13 12 21 21 C 1.52997 * 109.46848 * 85.00348 * 13 12 2 22 22 C 1.53778 * 113.61684 * 279.13378 * 21 13 12 23 23 C 1.53955 * 87.02316 * 220.04819 * 22 21 13 24 24 C 1.53778 * 87.10843 * 25.36329 * 23 22 21 25 25 H 1.08997 * 109.47472 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47409 * 300.00565 * 1 2 3 27 27 H 1.09007 * 109.46927 * 60.00188 * 1 2 3 28 28 H 0.97001 * 120.00355 * 179.97438 * 7 6 4 29 29 H 1.00902 * 110.99781 * 321.04771 * 12 2 1 30 30 H 1.08001 * 120.00192 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.00146 * 180.23159 * 17 16 15 32 32 H 1.08002 * 120.00422 * 179.83385 * 18 17 16 33 33 H 1.08000 * 120.00342 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.00341 * 359.97438 * 20 15 13 35 35 H 1.09000 * 112.85017 * 50.33668 * 21 13 12 36 36 H 1.08994 * 113.61342 * 334.57274 * 22 21 13 37 37 H 1.09003 * 113.61189 * 105.46899 * 22 21 13 38 38 H 1.09001 * 113.53585 * 270.81578 * 23 22 21 39 39 H 1.08999 * 113.74035 * 139.94146 * 23 22 21 40 40 H 1.09007 * 113.61773 * 220.09189 * 24 23 22 41 41 H 1.08996 * 113.61772 * 89.18628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8594 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8469 2.1766 1.4919 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 1.9787 -0.5678 -3.6258 16 6 2.6376 -1.7771 -3.7464 17 6 2.5391 -2.5039 -4.9182 18 6 1.7885 -2.0176 -5.9722 19 6 1.1340 -0.8058 -5.8535 20 6 1.2293 -0.0809 -4.6802 21 6 3.4111 0.9807 -2.3223 22 6 3.4187 2.1794 -1.3590 23 6 4.2095 2.9398 -2.4390 24 6 3.5617 1.9969 -3.4666 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.9031 -0.5277 4.4377 29 1 1.4496 -1.4980 -1.4099 30 1 3.2271 -2.1553 -2.9243 31 1 3.0508 -3.4504 -5.0112 32 1 1.7138 -2.5841 -6.8887 33 1 0.5479 -0.4256 -6.6770 34 1 0.7178 0.8658 -4.5875 35 1 4.2722 0.3224 -2.2069 36 1 2.4285 2.5937 -1.1699 37 1 3.9858 2.0015 -0.4452 38 1 5.2894 2.8179 -2.3545 39 1 3.9086 3.9813 -2.5516 40 1 4.2441 1.6719 -4.2521 41 1 2.6107 2.3613 -3.8549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104696608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 46.431045 kcal Electronic energy + Delta-G solvation = -19794.110324 eV Core-core repulsion = 17060.332148 eV Total energy + Delta-G solvation = -2733.778175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78574 -38.08660 -35.78317 -32.88625 -31.34759 -30.73701 -28.74090 -26.20766 -25.25107 -25.01912 -23.02971 -22.43267 -20.64584 -19.77845 -18.97293 -17.02284 -16.39544 -15.48541 -15.21074 -15.01792 -14.56522 -14.38633 -13.93281 -13.44373 -13.15290 -12.75085 -12.62908 -12.50368 -12.26281 -12.08382 -11.91345 -11.65666 -11.49532 -11.11554 -10.88959 -10.77361 -10.41257 -10.32451 -10.09100 -9.84282 -9.77348 -9.47210 -9.06177 -8.75370 -8.54017 -8.47879 -7.41728 -6.01801 -3.98120 1.51557 1.57130 3.26503 3.35945 3.39125 3.95611 4.42343 4.78037 4.81203 5.03794 5.06580 5.11111 5.12935 5.22220 5.29961 5.32439 5.48462 5.68012 5.78980 5.83278 5.92817 6.01800 6.07018 6.10820 6.16600 6.21283 6.22738 6.29690 6.30952 6.51754 6.53806 6.60720 6.62193 6.68007 6.74898 6.83848 6.96512 7.16983 7.17806 7.76414 7.95983 8.36038 8.73239 9.09965 9.61449 11.11934 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.006502 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.339168 B = 4305.571615 C = 4926.652843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.178 3.822 3 H 0.045 0.955 4 C -0.493 4.493 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.883 3.117 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.663 5.663 13 C 0.131 3.869 14 H 0.042 0.958 15 C -0.072 4.072 16 C -0.098 4.098 17 C -0.124 4.124 18 C -0.130 4.130 19 C -0.126 4.126 20 C -0.117 4.117 21 C -0.081 4.081 22 C -0.132 4.132 23 C -0.145 4.145 24 C -0.135 4.135 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.024 0.976 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 3.243 -17.500 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.069 3.931 3 H 0.062 0.938 4 C -0.532 4.532 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.292 5.292 13 C 0.021 3.979 14 H 0.060 0.940 15 C -0.073 4.073 16 C -0.116 4.116 17 C -0.142 4.142 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.100 4.100 22 C -0.169 4.169 23 C -0.182 4.182 24 C -0.173 4.173 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.604 3.322 -17.115 17.445 hybrid contribution -1.759 0.899 0.049 1.976 sum -1.156 4.221 -17.067 17.619 Atomic orbital electron populations 1.22884 1.01881 1.00822 0.98690 1.19788 0.88224 0.95817 0.89226 0.93765 1.20969 1.30902 1.13590 0.87699 0.90106 1.24919 0.96006 0.96523 0.95931 1.69880 1.46109 1.40357 0.97796 0.86941 0.80645 0.84156 0.76847 1.20937 1.22511 1.19450 1.60720 1.57864 1.08386 1.02268 1.20485 0.96318 0.93406 0.87677 0.93969 1.20096 0.96338 0.95228 0.95589 1.21189 0.98642 0.94179 0.97628 1.21170 0.99435 0.99839 0.93738 1.21068 0.98543 0.96492 0.98748 1.21029 1.00276 0.95473 0.97594 1.21025 0.99424 0.99720 0.93381 1.22450 0.97757 0.94548 0.95274 1.22956 1.00216 0.96127 0.97651 1.22868 0.99672 0.98107 0.97554 1.22919 1.00383 0.97427 0.96606 0.92830 0.93738 0.95678 0.92781 0.85030 0.84825 0.86392 0.86730 0.86671 0.86693 0.88716 0.90723 0.90763 0.90537 0.92165 0.92102 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.98 8.62 37.16 0.32 -3.66 16 2 C 0.18 4.09 1.96 -68.87 -0.13 3.95 16 3 H 0.04 1.04 4.33 -51.93 -0.22 0.82 16 4 C -0.49 -13.70 9.42 -34.44 -0.32 -14.02 16 5 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 8 Si 0.88 21.96 24.37 -169.99 -4.14 17.82 16 9 H -0.28 -6.90 6.87 56.52 0.39 -6.51 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.66 -13.03 5.43 -102.17 -0.56 -13.59 16 13 C 0.13 2.17 1.99 -68.87 -0.14 2.03 16 14 H 0.04 0.73 6.81 -51.93 -0.35 0.38 16 15 C -0.07 -1.06 4.26 -104.63 -0.45 -1.50 16 16 C -0.10 -1.40 9.01 -39.58 -0.36 -1.75 16 17 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 18 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 19 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 20 C -0.12 -1.53 9.57 -39.59 -0.38 -1.91 16 21 C -0.08 -1.28 3.37 -89.81 -0.30 -1.58 16 22 C -0.13 -2.16 5.89 -25.83 -0.15 -2.31 16 23 C -0.14 -1.91 8.09 -25.83 -0.21 -2.12 16 24 C -0.14 -1.79 7.06 -25.92 -0.18 -1.97 16 25 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 26 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 27 H 0.02 0.47 7.43 -51.93 -0.39 0.08 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 29 H 0.33 6.39 7.74 -39.29 -0.30 6.09 16 30 H 0.13 2.00 7.73 -52.49 -0.41 1.59 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.07 1.27 7.37 -51.93 -0.38 0.88 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -29.42 319.28 -9.18 -38.60 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.48 Total: 7.93 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -3.59 Total: -28.70 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.22 Total: -40.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.42 -9.18 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104696608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.034 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds