Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.50703 * 109.46942 * 119.99481 * 2 1 3 5 5 H 1.08002 * 119.99797 * 120.00269 * 4 2 1 6 6 C 1.37878 * 120.00397 * 300.00022 * 4 2 1 7 7 N 1.31510 * 120.00252 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99647 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47393 * 89.99918 * 8 6 4 10 10 H 1.48504 * 109.47207 * 209.99895 * 8 6 4 11 11 H 1.48500 * 109.47447 * 329.99895 * 8 6 4 12 12 N 1.46901 * 109.47559 * 239.99642 * 2 1 3 13 13 C 1.46896 * 110.99913 * 84.99842 * 12 2 1 14 14 H 1.09002 * 109.47220 * 325.00418 * 13 12 2 15 15 C 1.50701 * 109.47239 * 205.00362 * 13 12 2 16 16 C 1.38238 * 119.99612 * 319.72864 * 15 13 12 17 17 C 1.38236 * 119.99607 * 179.81010 * 16 15 13 18 18 C 1.38235 * 120.00116 * 0.39532 * 17 16 15 19 19 C 1.38233 * 119.99985 * 359.86014 * 18 17 16 20 20 C 1.38223 * 120.00108 * 140.00251 * 15 13 12 21 21 C 1.52997 * 109.46848 * 85.00348 * 13 12 2 22 22 C 1.53778 * 113.61684 * 279.13378 * 21 13 12 23 23 C 1.53955 * 87.02316 * 220.04819 * 22 21 13 24 24 C 1.53778 * 87.10843 * 25.36329 * 23 22 21 25 25 H 1.08997 * 109.47472 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47409 * 300.00565 * 1 2 3 27 27 H 1.09007 * 109.46927 * 60.00188 * 1 2 3 28 28 H 0.97001 * 120.00355 * 179.97438 * 7 6 4 29 29 H 1.00902 * 110.99781 * 321.04771 * 12 2 1 30 30 H 1.08001 * 120.00192 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.00146 * 180.23159 * 17 16 15 32 32 H 1.08002 * 120.00422 * 179.83385 * 18 17 16 33 33 H 1.08000 * 120.00342 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.00341 * 359.97438 * 20 15 13 35 35 H 1.09000 * 112.85017 * 50.33668 * 21 13 12 36 36 H 1.08994 * 113.61342 * 334.57274 * 22 21 13 37 37 H 1.09003 * 113.61189 * 105.46899 * 22 21 13 38 38 H 1.09001 * 113.53585 * 270.81578 * 23 22 21 39 39 H 1.08999 * 113.74035 * 139.94146 * 23 22 21 40 40 H 1.09007 * 113.61773 * 220.09189 * 24 23 22 41 41 H 1.08996 * 113.61772 * 89.18628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8594 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8469 2.1766 1.4919 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 1.9787 -0.5678 -3.6258 16 6 2.6376 -1.7771 -3.7464 17 6 2.5391 -2.5039 -4.9182 18 6 1.7885 -2.0176 -5.9722 19 6 1.1340 -0.8058 -5.8535 20 6 1.2293 -0.0809 -4.6802 21 6 3.4111 0.9807 -2.3223 22 6 3.4187 2.1794 -1.3590 23 6 4.2095 2.9398 -2.4390 24 6 3.5617 1.9969 -3.4666 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.9031 -0.5277 4.4377 29 1 1.4496 -1.4980 -1.4099 30 1 3.2271 -2.1553 -2.9243 31 1 3.0508 -3.4504 -5.0112 32 1 1.7138 -2.5841 -6.8887 33 1 0.5479 -0.4256 -6.6770 34 1 0.7178 0.8658 -4.5875 35 1 4.2722 0.3224 -2.2069 36 1 2.4285 2.5937 -1.1699 37 1 3.9858 2.0015 -0.4452 38 1 5.2894 2.8179 -2.3545 39 1 3.9086 3.9813 -2.5516 40 1 4.2441 1.6719 -4.2521 41 1 2.6107 2.3613 -3.8549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104696608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 29.387386 kcal Electronic energy + Delta-G solvation = -19794.849392 eV Core-core repulsion = 17060.332148 eV Total energy + Delta-G solvation = -2734.517244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94994 -39.16227 -37.40051 -34.67576 -32.99424 -31.70921 -30.15894 -27.53379 -27.09389 -26.41760 -24.20662 -23.45490 -22.07314 -21.26601 -20.19324 -18.82158 -17.71509 -16.94657 -16.65907 -16.30661 -15.85285 -15.65561 -15.26896 -14.93976 -14.61283 -14.15605 -14.08848 -13.81891 -13.75232 -13.39951 -13.27343 -13.10882 -12.77450 -12.58959 -12.50980 -11.99891 -11.89752 -11.81879 -11.53718 -11.37182 -11.26014 -10.95454 -10.90880 -10.70288 -9.71975 -9.51890 -9.00772 -8.25535 -6.26245 0.53329 0.60104 1.27669 1.33167 1.43061 2.32016 2.97079 3.09138 3.41370 3.65006 3.89583 3.97372 4.00218 4.11136 4.24982 4.30428 4.39425 4.47113 4.50904 4.55899 4.67489 4.76054 4.79650 4.81560 4.87372 4.90231 4.96295 5.09022 5.11374 5.16857 5.22339 5.27907 5.39682 5.42869 5.64503 5.67261 5.70562 5.71839 5.79834 6.11595 6.21833 6.73655 6.76746 6.81044 7.38147 8.92170 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.006502 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.339168 B = 4305.571615 C = 4926.652843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.185 3.815 3 H 0.044 0.956 4 C -0.495 4.495 5 H 0.034 0.966 6 C 0.009 3.991 7 N -0.953 5.953 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.300 1.300 11 H -0.248 1.248 12 N -0.673 5.673 13 C 0.137 3.863 14 H 0.042 0.958 15 C -0.086 4.086 16 C -0.117 4.117 17 C -0.128 4.128 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.089 4.089 22 C -0.144 4.144 23 C -0.131 4.131 24 C -0.118 4.118 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.263 0.737 29 H 0.332 0.668 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 4.901 -20.776 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.076 3.924 3 H 0.061 0.939 4 C -0.534 4.534 5 H 0.052 0.948 6 C -0.187 4.187 7 N -0.594 5.594 8 Si 0.774 3.226 9 H -0.196 1.196 10 H -0.228 1.228 11 H -0.172 1.172 12 N -0.302 5.302 13 C 0.028 3.972 14 H 0.060 0.940 15 C -0.087 4.087 16 C -0.135 4.135 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.108 4.108 22 C -0.182 4.182 23 C -0.169 4.169 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.131 0.869 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.850 4.979 -20.428 21.043 hybrid contribution -1.222 0.250 1.002 1.599 sum -2.071 5.229 -19.426 20.224 Atomic orbital electron populations 1.22762 1.00223 1.01130 0.99690 1.19532 0.89323 0.95048 0.88536 0.93864 1.21260 1.29761 1.12244 0.90150 0.94794 1.25752 0.97616 0.99896 0.95451 1.70044 1.48274 1.42625 0.98465 0.85893 0.79043 0.80372 0.77266 1.19640 1.22755 1.17229 1.60560 1.57804 1.09039 1.02829 1.20453 0.96467 0.92915 0.87378 0.94048 1.19926 0.97985 0.95462 0.95302 1.21122 0.99384 0.94866 0.98133 1.21390 0.99637 1.00305 0.93289 1.21443 0.97216 0.96550 0.99270 1.21389 0.99799 0.95142 0.97728 1.21189 0.99036 1.00439 0.93339 1.22456 0.96810 0.94539 0.96961 1.22990 1.00168 0.97617 0.97421 1.22823 0.99658 0.98866 0.95522 1.22824 1.01171 0.95724 0.95866 0.93006 0.94626 0.92535 0.92757 0.85011 0.86923 0.84832 0.83845 0.83781 0.85436 0.90646 0.91210 0.93667 0.89936 0.90290 0.91055 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.49 8.62 71.98 0.62 -6.87 16 2 C 0.19 8.55 1.96 44.17 0.09 8.64 16 3 H 0.04 2.03 4.33 -2.39 -0.01 2.02 16 4 C -0.50 -28.67 9.42 25.60 0.24 -28.43 16 5 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 6 C 0.01 0.54 5.45 84.66 0.46 1.00 16 7 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 8 Si 0.95 45.54 24.37 68.60 1.67 47.21 16 9 H -0.27 -12.42 6.87 99.48 0.68 -11.73 16 10 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 11 H -0.25 -10.99 6.53 99.48 0.65 -10.34 16 12 N -0.67 -27.03 5.43 -477.17 -2.59 -29.62 16 13 C 0.14 4.46 1.99 44.17 0.09 4.55 16 14 H 0.04 1.35 6.81 -2.39 -0.02 1.34 16 15 C -0.09 -2.42 4.26 -19.87 -0.08 -2.50 16 16 C -0.12 -3.28 9.01 22.27 0.20 -3.08 16 17 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 18 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 19 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 20 C -0.12 -2.82 9.57 22.27 0.21 -2.61 16 21 C -0.09 -2.77 3.37 -10.27 -0.03 -2.80 16 22 C -0.14 -4.67 5.89 31.18 0.18 -4.49 16 23 C -0.13 -3.21 8.09 31.18 0.25 -2.95 16 24 C -0.12 -2.83 7.06 31.12 0.22 -2.61 16 25 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 26 H 0.04 1.54 3.27 -2.39 -0.01 1.54 16 27 H 0.06 2.00 7.43 -2.38 -0.02 1.98 16 28 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 29 H 0.33 13.11 7.74 -89.69 -0.69 12.41 16 30 H 0.11 3.55 7.73 -2.91 -0.02 3.53 16 31 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 34 H 0.13 2.59 8.04 -2.91 -0.02 2.57 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.07 2.30 7.37 -2.39 -0.02 2.28 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.09 1.88 8.10 -2.39 -0.02 1.87 16 Total: -1.00 -66.04 319.28 2.73 -63.31 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.23 Total: 28.78 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 3.12 Total: -49.26 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.29 Total: -90.04 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Total: -66.04 2.73 -63.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104696608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.695 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds