Wall clock time and date at job start Mon Mar 30 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 115.55994 * 2 1 4 4 C 1.52991 * 117.50049 * 214.30926 * 2 1 3 5 5 C 1.52999 * 117.49973 * 145.68262 * 2 1 3 6 6 H 1.09001 * 117.50128 * 214.98200 * 5 2 1 7 7 C 1.53006 * 117.51725 * 0.02562 * 5 2 1 8 8 N 1.46901 * 109.46922 * 185.01653 * 7 5 2 9 9 C 1.46897 * 110.99776 * 66.04758 * 8 7 5 10 10 C 1.46901 * 110.99308 * 189.99920 * 8 7 5 11 11 H 1.08996 * 109.47335 * 299.99272 * 10 8 7 12 12 C 1.50695 * 109.47254 * 60.00240 * 10 8 7 13 13 H 1.07997 * 120.00103 * 35.13858 * 12 10 8 14 14 C 1.37881 * 119.99833 * 215.13300 * 12 10 8 15 15 N 1.31519 * 119.99990 * 6.47371 * 14 12 10 16 16 Si 1.86800 * 119.99997 * 186.47000 * 14 12 10 17 17 H 1.48497 * 109.47136 * 90.00197 * 16 14 12 18 18 H 1.48499 * 109.47227 * 210.00123 * 16 14 12 19 19 H 1.48501 * 109.47188 * 330.00466 * 16 14 12 20 20 C 1.50699 * 109.46608 * 179.97438 * 10 8 7 21 21 C 1.38235 * 120.00272 * 313.82834 * 20 10 8 22 22 C 1.38240 * 120.00386 * 179.79008 * 21 20 10 23 23 C 1.38241 * 119.99601 * 0.43452 * 22 21 20 24 24 C 1.38232 * 119.99922 * 359.81735 * 23 22 21 25 25 C 1.38231 * 120.00262 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47072 * 154.29664 * 1 2 3 27 27 H 1.08995 * 109.47383 * 274.30198 * 1 2 3 28 28 H 1.09005 * 109.46942 * 34.29917 * 1 2 3 29 29 H 1.09001 * 117.50093 * 145.02083 * 4 2 1 30 30 H 1.08998 * 117.50098 * 0.02562 * 4 2 1 31 31 H 1.08998 * 109.46450 * 305.01976 * 7 5 2 32 32 H 1.09003 * 109.47197 * 65.01524 * 7 5 2 33 33 H 1.08994 * 109.47394 * 59.99967 * 9 8 7 34 34 H 1.08998 * 109.46639 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46860 * 299.99257 * 9 8 7 36 36 H 0.96992 * 119.99960 * 180.02562 * 15 14 12 37 37 H 1.07998 * 119.99833 * 359.97438 * 21 20 10 38 38 H 1.07990 * 120.00064 * 180.27272 * 22 21 20 39 39 H 1.08000 * 119.99947 * 179.83342 * 23 22 21 40 40 H 1.08000 * 120.00021 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00299 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 3.1715 -0.8750 1.2684 7 6 1.3592 -2.1566 1.4714 8 7 2.2089 -3.0730 2.2436 9 6 2.8755 -2.3688 3.3471 10 6 1.4329 -4.2167 2.7413 11 1 0.6299 -3.8584 3.3853 12 6 0.8444 -4.9697 1.5761 13 1 1.3968 -5.0517 0.6518 14 6 -0.3992 -5.5540 1.6903 15 7 -1.1261 -5.3483 2.7669 16 14 -1.0518 -6.6375 0.3157 17 1 -0.6431 -8.0444 0.5580 18 1 -2.5339 -6.5520 0.2791 19 1 -0.4972 -6.1776 -0.9828 20 6 2.3360 -5.1329 3.5262 21 6 3.5731 -5.4846 3.0195 22 6 4.4033 -6.3216 3.7415 23 6 3.9927 -6.8139 4.9662 24 6 2.7535 -6.4664 5.4706 25 6 1.9251 -5.6260 4.7506 26 1 -0.3633 -0.9260 -0.4457 27 1 -0.3634 0.0771 1.0247 28 1 -0.3633 0.8490 -0.5791 29 1 3.1715 -0.8751 -1.2682 30 1 1.6113 -1.8582 -1.2685 31 1 0.6675 -1.6489 2.1435 32 1 0.7956 -2.7221 0.7292 33 1 2.1247 -1.9436 4.0130 34 1 3.4983 -3.0703 3.9021 35 1 3.4985 -1.5701 2.9447 36 1 -2.0008 -5.7596 2.8473 37 1 3.8922 -5.1032 2.0608 38 1 5.3715 -6.5928 3.3475 39 1 4.6402 -7.4700 5.5291 40 1 2.4325 -6.8514 6.4272 41 1 0.9567 -5.3548 5.1444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111732786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:46 Heat of formation + Delta-G solvation = 47.720096 kcal Electronic energy + Delta-G solvation = -19705.720416 eV Core-core repulsion = 16971.998138 eV Total energy + Delta-G solvation = -2733.722278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.72215 -37.81700 -35.60350 -32.63955 -30.51847 -29.95593 -28.23758 -27.27540 -26.30578 -23.87805 -22.15930 -21.55116 -20.84016 -19.49945 -18.68533 -16.58808 -15.84100 -15.77732 -14.75485 -14.41776 -14.13188 -13.85216 -13.54089 -13.37358 -12.76543 -12.65847 -12.48418 -12.20501 -12.09131 -11.80005 -11.52431 -11.35606 -11.17402 -11.01171 -10.92763 -10.77753 -10.49637 -10.18540 -10.00181 -9.80604 -9.53117 -9.31735 -9.21114 -8.58967 -8.01361 -7.64305 -7.15409 -6.12677 -4.15204 2.31955 2.34903 3.26614 3.33494 3.36410 4.15916 4.34239 4.70193 4.99552 5.10623 5.21387 5.33888 5.49625 5.60835 5.68152 5.79559 5.87524 5.99187 6.03160 6.11078 6.14569 6.20840 6.23182 6.26159 6.30494 6.45447 6.48286 6.57753 6.58647 6.62465 6.64065 6.90839 6.95345 7.10208 7.31382 7.35407 7.44586 7.77044 7.78599 7.86172 8.08303 8.22203 8.54439 8.97812 9.48092 10.93363 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.008300 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.663536 B = 3372.864434 C = 4669.232759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.164 4.164 3 H 0.094 0.906 4 C -0.173 4.173 5 C -0.134 4.134 6 H 0.099 0.901 7 C 0.102 3.898 8 N -0.535 5.535 9 C 0.022 3.978 10 C 0.232 3.768 11 H 0.042 0.958 12 C -0.495 4.495 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.023 4.023 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.153 4.153 24 C -0.131 4.131 25 C -0.119 4.119 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.022 0.978 32 H 0.091 0.909 33 H 0.011 0.989 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 5.539 -0.402 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.182 4.182 3 H 0.112 0.888 4 C -0.210 4.210 5 C -0.153 4.153 6 H 0.117 0.883 7 C -0.026 4.026 8 N -0.259 5.259 9 C -0.126 4.126 10 C 0.126 3.874 11 H 0.060 0.940 12 C -0.534 4.534 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.523 5.523 16 Si 0.721 3.279 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.024 4.024 21 C -0.121 4.121 22 C -0.154 4.154 23 C -0.171 4.171 24 C -0.149 4.149 25 C -0.137 4.137 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.040 0.960 32 H 0.109 0.891 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.900 5.310 -0.634 7.963 hybrid contribution -0.987 -0.494 -0.078 1.106 sum 4.913 4.816 -0.711 6.917 Atomic orbital electron populations 1.21304 0.93137 1.01635 1.01688 1.22334 0.95339 0.94021 1.06537 0.88781 1.23074 1.01750 1.01091 0.95077 1.22501 1.00740 0.98479 0.93565 0.88310 1.21406 0.92664 0.91469 0.97081 1.62065 1.32848 1.08470 1.22496 1.22373 0.98316 0.98101 0.93856 1.18504 0.88658 0.85915 0.94338 0.94018 1.20930 1.01170 1.32993 0.98260 0.91716 1.24987 0.96465 0.96232 0.95971 1.69908 1.11516 1.43073 1.27846 0.86568 0.77795 0.81198 0.82376 1.20511 1.21271 1.19642 1.20497 0.93252 0.96746 0.91912 1.20986 0.94178 0.97370 0.99569 1.21010 0.99415 0.99359 0.95615 1.20809 0.96945 1.02340 0.97054 1.20951 0.94882 0.99489 0.99573 1.21086 0.99152 0.98418 0.95085 0.92132 0.92342 0.93028 0.89770 0.88742 0.95970 0.89117 0.97099 0.92071 0.93025 0.92711 0.86189 0.87650 0.87826 0.87657 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.20 37.16 0.34 -1.32 16 2 C -0.16 -2.30 6.41 -90.62 -0.58 -2.88 16 3 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 4 C -0.17 -2.57 9.82 -26.73 -0.26 -2.83 16 5 C -0.13 -2.18 5.69 -90.62 -0.52 -2.70 16 6 H 0.10 1.57 6.38 -51.93 -0.33 1.24 16 7 C 0.10 2.01 4.16 -3.82 -0.02 1.99 16 8 N -0.53 -11.19 4.15 -237.70 -0.99 -12.17 16 9 C 0.02 0.41 9.02 60.06 0.54 0.96 16 10 C 0.23 5.55 1.83 -70.02 -0.13 5.42 16 11 H 0.04 1.13 7.03 -51.93 -0.36 0.77 16 12 C -0.50 -12.91 6.86 -34.44 -0.24 -13.15 16 13 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 14 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 15 N -0.89 -24.40 12.77 55.43 0.71 -23.69 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.02 -0.52 3.50 -104.62 -0.37 -0.88 16 21 C -0.10 -2.13 8.46 -39.58 -0.33 -2.47 16 22 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 23 C -0.15 -2.72 10.05 -39.58 -0.40 -3.11 16 24 C -0.13 -2.47 10.05 -39.59 -0.40 -2.87 16 25 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 26 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 27 H 0.06 0.83 7.83 -51.93 -0.41 0.42 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.48 7.94 -51.93 -0.41 1.07 16 31 H 0.02 0.46 7.75 -51.93 -0.40 0.06 16 32 H 0.09 2.00 6.50 -51.93 -0.34 1.66 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 1.15 6.29 -51.93 -0.33 0.82 16 35 H 0.05 0.84 6.33 -51.93 -0.33 0.51 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 37 H 0.12 2.50 7.91 -52.49 -0.42 2.09 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.12 2.62 8.00 -52.48 -0.42 2.20 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -26.86 330.70 -10.21 -37.06 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.66 Total: 5.97 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -3.23 Total: -28.03 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.28 Total: -35.87 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.86 -10.21 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111732786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.784 kcal (2) G-P(sol) polarization free energy of solvation -26.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds