Wall clock time and date at job start Mon Mar 30 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 115.55994 * 2 1 4 4 C 1.52991 * 117.50049 * 214.30926 * 2 1 3 5 5 C 1.52999 * 117.49973 * 145.68262 * 2 1 3 6 6 H 1.09001 * 117.50128 * 214.98200 * 5 2 1 7 7 C 1.53006 * 117.51725 * 0.02562 * 5 2 1 8 8 N 1.46901 * 109.46922 * 185.01653 * 7 5 2 9 9 C 1.46897 * 110.99776 * 66.04758 * 8 7 5 10 10 C 1.46901 * 110.99308 * 189.99920 * 8 7 5 11 11 H 1.08996 * 109.47335 * 299.99272 * 10 8 7 12 12 C 1.50695 * 109.47254 * 60.00240 * 10 8 7 13 13 H 1.07997 * 120.00103 * 35.13858 * 12 10 8 14 14 C 1.37881 * 119.99833 * 215.13300 * 12 10 8 15 15 N 1.31519 * 119.99990 * 6.47371 * 14 12 10 16 16 Si 1.86800 * 119.99997 * 186.47000 * 14 12 10 17 17 H 1.48497 * 109.47136 * 90.00197 * 16 14 12 18 18 H 1.48499 * 109.47227 * 210.00123 * 16 14 12 19 19 H 1.48501 * 109.47188 * 330.00466 * 16 14 12 20 20 C 1.50699 * 109.46608 * 179.97438 * 10 8 7 21 21 C 1.38235 * 120.00272 * 313.82834 * 20 10 8 22 22 C 1.38240 * 120.00386 * 179.79008 * 21 20 10 23 23 C 1.38241 * 119.99601 * 0.43452 * 22 21 20 24 24 C 1.38232 * 119.99922 * 359.81735 * 23 22 21 25 25 C 1.38231 * 120.00262 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47072 * 154.29664 * 1 2 3 27 27 H 1.08995 * 109.47383 * 274.30198 * 1 2 3 28 28 H 1.09005 * 109.46942 * 34.29917 * 1 2 3 29 29 H 1.09001 * 117.50093 * 145.02083 * 4 2 1 30 30 H 1.08998 * 117.50098 * 0.02562 * 4 2 1 31 31 H 1.08998 * 109.46450 * 305.01976 * 7 5 2 32 32 H 1.09003 * 109.47197 * 65.01524 * 7 5 2 33 33 H 1.08994 * 109.47394 * 59.99967 * 9 8 7 34 34 H 1.08998 * 109.46639 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46860 * 299.99257 * 9 8 7 36 36 H 0.96992 * 119.99960 * 180.02562 * 15 14 12 37 37 H 1.07998 * 119.99833 * 359.97438 * 21 20 10 38 38 H 1.07990 * 120.00064 * 180.27272 * 22 21 20 39 39 H 1.08000 * 119.99947 * 179.83342 * 23 22 21 40 40 H 1.08000 * 120.00021 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00299 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 3.1715 -0.8750 1.2684 7 6 1.3592 -2.1566 1.4714 8 7 2.2089 -3.0730 2.2436 9 6 2.8755 -2.3688 3.3471 10 6 1.4329 -4.2167 2.7413 11 1 0.6299 -3.8584 3.3853 12 6 0.8444 -4.9697 1.5761 13 1 1.3968 -5.0517 0.6518 14 6 -0.3992 -5.5540 1.6903 15 7 -1.1261 -5.3483 2.7669 16 14 -1.0518 -6.6375 0.3157 17 1 -0.6431 -8.0444 0.5580 18 1 -2.5339 -6.5520 0.2791 19 1 -0.4972 -6.1776 -0.9828 20 6 2.3360 -5.1329 3.5262 21 6 3.5731 -5.4846 3.0195 22 6 4.4033 -6.3216 3.7415 23 6 3.9927 -6.8139 4.9662 24 6 2.7535 -6.4664 5.4706 25 6 1.9251 -5.6260 4.7506 26 1 -0.3633 -0.9260 -0.4457 27 1 -0.3634 0.0771 1.0247 28 1 -0.3633 0.8490 -0.5791 29 1 3.1715 -0.8751 -1.2682 30 1 1.6113 -1.8582 -1.2685 31 1 0.6675 -1.6489 2.1435 32 1 0.7956 -2.7221 0.7292 33 1 2.1247 -1.9436 4.0130 34 1 3.4983 -3.0703 3.9021 35 1 3.4985 -1.5701 2.9447 36 1 -2.0008 -5.7596 2.8473 37 1 3.8922 -5.1032 2.0608 38 1 5.3715 -6.5928 3.3475 39 1 4.6402 -7.4700 5.5291 40 1 2.4325 -6.8514 6.4272 41 1 0.9567 -5.3548 5.1444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111732786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:46 Heat of formation + Delta-G solvation = 34.945944 kcal Electronic energy + Delta-G solvation = -19706.274345 eV Core-core repulsion = 16971.998138 eV Total energy + Delta-G solvation = -2734.276207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31785 -39.18549 -37.16851 -34.59991 -32.15972 -31.50989 -29.44782 -29.07475 -27.85975 -25.72218 -23.71593 -23.09996 -22.10251 -21.18612 -20.05266 -18.54810 -17.43519 -17.21828 -16.48298 -15.96462 -15.81581 -15.48765 -15.05267 -14.89610 -14.27543 -14.02099 -13.96855 -13.82838 -13.52628 -13.47041 -13.16241 -12.90146 -12.81121 -12.57727 -12.48360 -12.27054 -12.09050 -11.93740 -11.58953 -11.53686 -11.23045 -10.73304 -10.58916 -10.53543 -9.57211 -9.27614 -8.90986 -8.15268 -6.24320 0.74640 0.79301 1.37250 1.38943 1.48015 2.37897 2.89073 3.05231 3.26430 3.47215 3.87706 4.05118 4.17416 4.28703 4.32491 4.43448 4.48280 4.55015 4.58396 4.61203 4.68486 4.84354 4.90454 4.95002 4.96631 4.98839 5.02533 5.07708 5.10983 5.18619 5.28348 5.41797 5.46552 5.48823 5.54508 5.68990 5.80800 5.84447 6.09075 6.12905 6.37146 6.46556 6.76742 6.94254 7.41791 8.89430 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.008300 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.663536 B = 3372.864434 C = 4669.232759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 H 0.123 0.877 4 C -0.169 4.169 5 C -0.151 4.151 6 H 0.110 0.890 7 C 0.111 3.889 8 N -0.535 5.535 9 C 0.029 3.971 10 C 0.241 3.759 11 H -0.003 1.003 12 C -0.499 4.499 13 H 0.053 0.947 14 C 0.021 3.979 15 N -0.917 5.917 16 Si 0.948 3.052 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.047 4.047 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.144 4.144 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.003 0.997 32 H 0.059 0.941 33 H 0.001 0.999 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.262 0.738 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 5.445 -0.818 9.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 H 0.141 0.859 4 C -0.206 4.206 5 C -0.169 4.169 6 H 0.127 0.873 7 C -0.017 4.017 8 N -0.259 5.259 9 C -0.119 4.119 10 C 0.134 3.866 11 H 0.014 0.986 12 C -0.537 4.537 13 H 0.072 0.928 14 C -0.179 4.179 15 N -0.556 5.556 16 Si 0.774 3.226 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.048 4.048 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.160 4.160 24 C -0.147 4.147 25 C -0.163 4.163 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.327 5.227 -1.057 9.888 hybrid contribution -1.677 -0.449 0.108 1.740 sum 6.649 4.778 -0.949 8.243 Atomic orbital electron populations 1.21331 0.93406 1.01858 1.01397 1.22464 0.95191 0.94601 1.04089 0.85924 1.23113 1.02675 1.01068 0.93704 1.22351 1.00986 0.99116 0.94453 0.87253 1.21252 0.92916 0.91591 0.95950 1.62068 1.32189 1.08487 1.23167 1.22360 0.98007 0.98479 0.93092 1.18222 0.88325 0.87022 0.93043 0.98563 1.21069 1.01288 1.32873 0.98492 0.92844 1.25655 0.96836 0.97502 0.97938 1.70040 1.11741 1.44297 1.29511 0.85700 0.77306 0.79422 0.80178 1.20442 1.20891 1.18977 1.20369 0.94282 0.97468 0.92651 1.20987 0.93932 0.98551 0.99791 1.21394 1.00194 0.97600 0.95382 1.21275 0.96494 1.01531 0.96750 1.21254 0.94995 0.98222 1.00230 1.21049 0.99035 1.00366 0.95808 0.93996 0.93318 0.90332 0.87408 0.90286 0.97925 0.92245 0.98076 0.92256 0.90189 0.92930 0.86811 0.84073 0.83621 0.85019 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 9.20 71.98 0.66 -2.68 16 2 C -0.14 -3.82 6.41 -10.80 -0.07 -3.89 16 3 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.17 -4.78 9.82 30.59 0.30 -4.48 16 5 C -0.15 -4.81 5.69 -10.79 -0.06 -4.87 16 6 H 0.11 3.27 6.38 -2.39 -0.02 3.25 16 7 C 0.11 4.59 4.16 86.31 0.36 4.95 16 8 N -0.54 -23.27 4.15 -905.94 -3.76 -27.02 16 9 C 0.03 1.09 9.02 127.69 1.15 2.24 16 10 C 0.24 12.18 1.83 43.42 0.08 12.26 16 11 H 0.00 -0.20 7.03 -2.39 -0.02 -0.22 16 12 C -0.50 -27.27 6.86 25.60 0.18 -27.10 16 13 H 0.05 2.97 7.82 -2.91 -0.02 2.95 16 14 C 0.02 1.14 5.45 84.66 0.46 1.60 16 15 N -0.92 -53.23 12.77 21.45 0.27 -52.95 16 16 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 C -0.05 -2.16 3.50 -19.87 -0.07 -2.23 16 21 C -0.11 -4.67 8.46 22.27 0.19 -4.49 16 22 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 23 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 24 C -0.13 -4.67 10.05 22.27 0.22 -4.44 16 25 C -0.14 -6.44 9.67 22.27 0.22 -6.22 16 26 H 0.04 1.27 7.90 -2.39 -0.02 1.25 16 27 H 0.05 1.41 7.83 -2.39 -0.02 1.39 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 2.49 7.94 -2.39 -0.02 2.47 16 31 H 0.00 0.12 7.75 -2.39 -0.02 0.10 16 32 H 0.06 2.79 6.50 -2.39 -0.02 2.78 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 2.24 6.29 -2.39 -0.02 2.23 16 35 H 0.08 2.52 6.33 -2.39 -0.02 2.51 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.11 4.72 7.91 -2.91 -0.02 4.70 16 38 H 0.14 3.72 8.06 -2.92 -0.02 3.70 16 39 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 41 H 0.09 4.39 8.00 -2.91 -0.02 4.36 16 Total: -1.00 -61.28 330.70 3.59 -57.69 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.98 Total: 23.86 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 4.06 Total: -47.71 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.48 Total: -79.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.28 3.59 -57.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111732786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.633 kcal (2) G-P(sol) polarization free energy of solvation -61.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds