Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.55895 * 2 1 4 4 C 1.52998 * 117.50137 * 145.70171 * 2 1 3 5 5 C 1.53004 * 60.00335 * 107.48585 * 4 2 1 6 6 H 1.08991 * 117.49917 * 107.50745 * 5 4 2 7 7 C 1.53004 * 117.49755 * 252.51354 * 5 4 2 8 8 N 1.46902 * 109.46545 * 243.61056 * 7 5 4 9 9 C 1.46898 * 110.99498 * 293.94931 * 8 7 5 10 10 C 1.46903 * 110.99779 * 170.00031 * 8 7 5 11 11 H 1.09005 * 109.47191 * 58.32237 * 10 8 7 12 12 C 1.50702 * 109.47038 * 178.32271 * 10 8 7 13 13 H 1.07995 * 119.99496 * 57.06674 * 12 10 8 14 14 C 1.37880 * 119.99809 * 237.06477 * 12 10 8 15 15 N 1.31511 * 119.99497 * 173.30826 * 14 12 10 16 16 Si 1.86799 * 120.00137 * 353.31030 * 14 12 10 17 17 H 1.48507 * 109.47101 * 85.37126 * 16 14 12 18 18 H 1.48494 * 109.47061 * 205.37317 * 16 14 12 19 19 H 1.48504 * 109.47231 * 325.37456 * 16 14 12 20 20 C 1.50695 * 109.47062 * 298.32441 * 10 8 7 21 21 C 1.38242 * 119.99856 * 315.18737 * 20 10 8 22 22 C 1.38238 * 119.99825 * 179.81134 * 21 20 10 23 23 C 1.38237 * 119.99932 * 0.39617 * 22 21 20 24 24 C 1.38235 * 119.99934 * 359.86031 * 23 22 21 25 25 C 1.38227 * 120.00265 * 359.94880 * 24 23 22 26 26 H 1.09000 * 109.46865 * 205.68014 * 1 2 3 27 27 H 1.08993 * 109.47022 * 325.67720 * 1 2 3 28 28 H 1.08999 * 109.47378 * 85.68551 * 1 2 3 29 29 H 1.09003 * 117.49905 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.51571 * 214.96964 * 4 2 1 31 31 H 1.09004 * 109.47078 * 3.60129 * 7 5 4 32 32 H 1.08997 * 109.47395 * 123.60660 * 7 5 4 33 33 H 1.08996 * 109.47471 * 61.14729 * 9 8 7 34 34 H 1.09007 * 109.46968 * 181.14653 * 9 8 7 35 35 H 1.09002 * 109.47516 * 301.14219 * 9 8 7 36 36 H 0.97002 * 119.99580 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.99817 * 0.02562 * 21 20 10 38 38 H 1.08000 * 120.00007 * 180.23263 * 22 21 20 39 39 H 1.08000 * 119.99683 * 179.83528 * 23 22 21 40 40 H 1.08008 * 119.99508 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00193 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1209 -0.7653 6 1 3.1715 -0.8753 -1.2686 7 6 1.3587 -2.1560 -1.4719 8 7 2.2080 -3.0727 -2.2441 9 6 2.8751 -2.3686 -3.3474 10 6 1.4316 -4.2160 -2.7422 11 1 0.6108 -3.8553 -3.3622 12 6 2.3249 -5.1108 -3.5621 13 1 3.2215 -5.5252 -3.1254 14 6 1.9975 -5.4005 -4.8698 15 7 2.8395 -6.0711 -5.6253 16 14 0.3580 -4.8404 -5.5681 17 1 0.4820 -3.4467 -6.0657 18 1 -0.0337 -5.7330 -6.6884 19 1 -0.6778 -4.8962 -4.5054 20 6 0.8766 -4.9925 -1.5761 21 6 1.6829 -5.2801 -0.4906 22 6 1.1727 -5.9890 0.5808 23 6 -0.1415 -6.4175 0.5633 24 6 -0.9462 -6.1345 -0.5245 25 6 -0.4372 -5.4222 -1.5941 26 1 -0.3633 -0.9262 0.4453 27 1 -0.3633 0.8487 0.5794 28 1 -0.3634 0.0773 -1.0247 29 1 1.6113 -1.8585 1.2682 30 1 3.1717 -0.8757 1.2680 31 1 0.7948 -2.7214 -0.7299 32 1 0.6673 -1.6479 -2.1440 33 1 3.5142 -1.5833 -2.9437 34 1 3.4815 -3.0746 -3.9150 35 1 2.1247 -1.9256 -4.0023 36 1 2.6090 -6.2752 -6.5452 37 1 2.7105 -4.9479 -0.4782 38 1 1.8016 -6.2105 1.4305 39 1 -0.5393 -6.9737 1.3992 40 1 -1.9729 -6.4696 -0.5383 41 1 -1.0658 -5.2014 -2.4442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111732792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = 50.822626 kcal Electronic energy + Delta-G solvation = -19909.982951 eV Core-core repulsion = 17176.395209 eV Total energy + Delta-G solvation = -2733.587742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.99097 -37.92337 -35.84297 -32.55613 -30.93949 -30.15086 -28.56630 -27.51664 -26.35637 -24.05358 -22.09274 -21.68809 -21.05585 -19.52408 -18.88915 -17.01605 -16.23035 -15.76552 -14.96790 -14.61062 -14.35205 -13.89278 -13.57010 -13.47825 -12.95135 -12.74099 -12.70860 -12.64209 -12.30575 -12.00683 -11.77342 -11.44113 -11.33652 -11.18868 -11.02589 -10.77140 -10.55876 -10.22526 -9.97062 -9.95470 -9.66500 -9.46798 -9.43766 -8.69771 -8.20405 -7.81477 -7.28820 -6.22320 -4.19733 2.11274 2.16575 3.17354 3.25884 3.27204 3.98013 4.27644 4.50505 4.76358 4.91367 5.14107 5.16602 5.29700 5.42733 5.53618 5.60883 5.71922 5.80511 5.86412 5.87986 5.98981 6.05384 6.09085 6.11125 6.16796 6.25266 6.28037 6.38399 6.40657 6.42752 6.58455 6.66387 6.75719 6.83284 7.04580 7.16315 7.25508 7.39047 7.52515 7.77604 8.04726 8.11707 8.53106 8.89905 9.40067 10.89619 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.008892 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.661379 B = 3148.140286 C = 4171.850948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.165 4.165 3 H 0.097 0.903 4 C -0.171 4.171 5 C -0.132 4.132 6 H 0.106 0.894 7 C 0.081 3.919 8 N -0.529 5.529 9 C 0.037 3.963 10 C 0.212 3.788 11 H 0.013 0.987 12 C -0.491 4.491 13 H 0.084 0.916 14 C 0.078 3.922 15 N -0.886 5.886 16 Si 0.867 3.133 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.029 4.029 21 C -0.092 4.092 22 C -0.130 4.130 23 C -0.148 4.148 24 C -0.126 4.126 25 C -0.136 4.136 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.005 0.995 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 7.740 10.177 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.183 4.183 3 H 0.115 0.885 4 C -0.208 4.208 5 C -0.151 4.151 6 H 0.124 0.876 7 C -0.047 4.047 8 N -0.253 5.253 9 C -0.111 4.111 10 C 0.107 3.893 11 H 0.031 0.969 12 C -0.529 4.529 13 H 0.102 0.898 14 C -0.127 4.127 15 N -0.522 5.522 16 Si 0.695 3.305 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.030 4.030 21 C -0.111 4.111 22 C -0.148 4.148 23 C -0.167 4.167 24 C -0.144 4.144 25 C -0.155 4.155 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.469 7.464 10.276 13.464 hybrid contribution -1.499 0.442 -1.075 1.897 sum -5.968 7.906 9.201 13.520 Atomic orbital electron populations 1.21304 0.93314 1.01550 1.01571 1.22360 0.95193 0.94315 1.06453 0.88472 1.23067 1.01893 1.00967 0.94893 1.22432 1.00947 0.98172 0.93502 0.87622 1.21656 0.93625 0.92645 0.96798 1.62206 1.31045 1.07789 1.24310 1.22199 0.98114 0.97910 0.92862 1.18760 0.92435 0.88327 0.89817 0.96923 1.20749 1.08778 1.28209 0.95169 0.89812 1.25049 0.96305 0.94670 0.96629 1.69882 1.35036 1.39455 1.07847 0.87032 0.85550 0.78912 0.79023 1.20163 1.21199 1.18895 1.20319 0.91924 0.96281 0.94512 1.20985 1.00144 0.97308 0.92628 1.21075 0.95407 0.99568 0.98734 1.20862 0.94730 1.02576 0.98482 1.20914 0.99067 0.99929 0.94514 1.21069 0.95848 1.00413 0.98159 0.92496 0.92760 0.92443 0.88988 0.89430 0.91153 0.95951 0.93436 0.89182 0.97609 0.92344 0.85675 0.87240 0.87466 0.87375 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.19 37.16 0.34 -1.09 16 2 C -0.16 -2.08 6.41 -90.61 -0.58 -2.66 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.17 -2.26 9.82 -26.73 -0.26 -2.53 16 5 C -0.13 -1.98 5.70 -90.61 -0.52 -2.49 16 6 H 0.11 1.61 6.39 -51.93 -0.33 1.28 16 7 C 0.08 1.43 4.10 -3.82 -0.02 1.41 16 8 N -0.53 -10.85 4.07 -237.68 -0.97 -11.81 16 9 C 0.04 0.75 9.09 60.06 0.55 1.29 16 10 C 0.21 4.88 1.61 -70.02 -0.11 4.76 16 11 H 0.01 0.31 4.63 -51.93 -0.24 0.07 16 12 C -0.49 -13.11 7.20 -34.44 -0.25 -13.36 16 13 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 16 Si 0.87 20.88 26.94 -169.99 -4.58 16.30 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.26 -6.09 5.75 56.52 0.33 -5.77 16 20 C -0.03 -0.63 3.49 -104.62 -0.37 -0.99 16 21 C -0.09 -1.83 8.91 -39.58 -0.35 -2.18 16 22 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 23 C -0.15 -2.43 10.05 -39.58 -0.40 -2.82 16 24 C -0.13 -2.19 10.05 -39.59 -0.40 -2.59 16 25 C -0.14 -2.74 9.67 -39.59 -0.38 -3.12 16 26 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 29 H 0.09 1.25 7.94 -51.93 -0.41 0.84 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.28 6.34 -51.93 -0.33 0.95 16 32 H 0.02 0.41 7.74 -51.93 -0.40 0.00 16 33 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 34 H 0.09 2.05 6.73 -51.93 -0.35 1.70 16 35 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 2.54 7.87 -52.49 -0.41 2.12 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.11 2.22 6.95 -52.48 -0.36 1.85 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -27.93 325.53 -9.69 -37.62 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.58 Total: 5.04 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -3.24 Total: -26.95 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.19 Total: -36.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.58 Total: 16.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.93 -9.69 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111732792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.446 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds