Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.55895 * 2 1 4 4 C 1.52998 * 117.50137 * 145.70171 * 2 1 3 5 5 C 1.53004 * 60.00335 * 107.48585 * 4 2 1 6 6 H 1.08991 * 117.49917 * 107.50745 * 5 4 2 7 7 C 1.53004 * 117.49755 * 252.51354 * 5 4 2 8 8 N 1.46902 * 109.46545 * 243.61056 * 7 5 4 9 9 C 1.46898 * 110.99498 * 293.94931 * 8 7 5 10 10 C 1.46903 * 110.99779 * 170.00031 * 8 7 5 11 11 H 1.09005 * 109.47191 * 58.32237 * 10 8 7 12 12 C 1.50702 * 109.47038 * 178.32271 * 10 8 7 13 13 H 1.07995 * 119.99496 * 57.06674 * 12 10 8 14 14 C 1.37880 * 119.99809 * 237.06477 * 12 10 8 15 15 N 1.31511 * 119.99497 * 173.30826 * 14 12 10 16 16 Si 1.86799 * 120.00137 * 353.31030 * 14 12 10 17 17 H 1.48507 * 109.47101 * 85.37126 * 16 14 12 18 18 H 1.48494 * 109.47061 * 205.37317 * 16 14 12 19 19 H 1.48504 * 109.47231 * 325.37456 * 16 14 12 20 20 C 1.50695 * 109.47062 * 298.32441 * 10 8 7 21 21 C 1.38242 * 119.99856 * 315.18737 * 20 10 8 22 22 C 1.38238 * 119.99825 * 179.81134 * 21 20 10 23 23 C 1.38237 * 119.99932 * 0.39617 * 22 21 20 24 24 C 1.38235 * 119.99934 * 359.86031 * 23 22 21 25 25 C 1.38227 * 120.00265 * 359.94880 * 24 23 22 26 26 H 1.09000 * 109.46865 * 205.68014 * 1 2 3 27 27 H 1.08993 * 109.47022 * 325.67720 * 1 2 3 28 28 H 1.08999 * 109.47378 * 85.68551 * 1 2 3 29 29 H 1.09003 * 117.49905 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.51571 * 214.96964 * 4 2 1 31 31 H 1.09004 * 109.47078 * 3.60129 * 7 5 4 32 32 H 1.08997 * 109.47395 * 123.60660 * 7 5 4 33 33 H 1.08996 * 109.47471 * 61.14729 * 9 8 7 34 34 H 1.09007 * 109.46968 * 181.14653 * 9 8 7 35 35 H 1.09002 * 109.47516 * 301.14219 * 9 8 7 36 36 H 0.97002 * 119.99580 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.99817 * 0.02562 * 21 20 10 38 38 H 1.08000 * 120.00007 * 180.23263 * 22 21 20 39 39 H 1.08000 * 119.99683 * 179.83528 * 23 22 21 40 40 H 1.08008 * 119.99508 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00193 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1209 -0.7653 6 1 3.1715 -0.8753 -1.2686 7 6 1.3587 -2.1560 -1.4719 8 7 2.2080 -3.0727 -2.2441 9 6 2.8751 -2.3686 -3.3474 10 6 1.4316 -4.2160 -2.7422 11 1 0.6108 -3.8553 -3.3622 12 6 2.3249 -5.1108 -3.5621 13 1 3.2215 -5.5252 -3.1254 14 6 1.9975 -5.4005 -4.8698 15 7 2.8395 -6.0711 -5.6253 16 14 0.3580 -4.8404 -5.5681 17 1 0.4820 -3.4467 -6.0657 18 1 -0.0337 -5.7330 -6.6884 19 1 -0.6778 -4.8962 -4.5054 20 6 0.8766 -4.9925 -1.5761 21 6 1.6829 -5.2801 -0.4906 22 6 1.1727 -5.9890 0.5808 23 6 -0.1415 -6.4175 0.5633 24 6 -0.9462 -6.1345 -0.5245 25 6 -0.4372 -5.4222 -1.5941 26 1 -0.3633 -0.9262 0.4453 27 1 -0.3633 0.8487 0.5794 28 1 -0.3634 0.0773 -1.0247 29 1 1.6113 -1.8585 1.2682 30 1 3.1717 -0.8757 1.2680 31 1 0.7948 -2.7214 -0.7299 32 1 0.6673 -1.6479 -2.1440 33 1 3.5142 -1.5833 -2.9437 34 1 3.4815 -3.0746 -3.9150 35 1 2.1247 -1.9256 -4.0023 36 1 2.6090 -6.2752 -6.5452 37 1 2.7105 -4.9479 -0.4782 38 1 1.8016 -6.2105 1.4305 39 1 -0.5393 -6.9737 1.3992 40 1 -1.9729 -6.4696 -0.5383 41 1 -1.0658 -5.2014 -2.4442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111732792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = 36.176481 kcal Electronic energy + Delta-G solvation = -19910.618056 eV Core-core repulsion = 17176.395209 eV Total energy + Delta-G solvation = -2734.222847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48180 -39.16153 -37.35250 -34.57418 -32.52464 -31.58740 -29.78943 -29.00709 -27.94169 -25.78507 -23.61646 -23.13667 -22.18638 -21.13337 -20.16113 -19.02231 -17.66514 -17.09161 -16.67721 -16.08231 -15.96259 -15.31417 -15.03640 -14.92682 -14.73254 -14.18768 -14.12508 -13.87862 -13.67703 -13.52866 -13.24128 -12.91202 -12.84288 -12.68616 -12.44624 -12.21647 -12.11450 -11.90257 -11.66099 -11.54998 -11.47214 -10.77001 -10.72211 -10.58606 -9.64361 -9.33667 -8.95880 -8.35565 -6.35902 0.65808 0.72047 1.23522 1.26594 1.34869 2.24788 2.78091 2.96808 3.16251 3.41878 3.82306 3.99968 4.07609 4.17612 4.27237 4.33219 4.44455 4.46626 4.51696 4.57977 4.62674 4.68191 4.80492 4.87758 4.89011 4.95601 4.97200 4.98831 5.03379 5.18829 5.21867 5.31357 5.37829 5.41496 5.46156 5.48774 5.73805 5.78375 5.99579 6.12268 6.30321 6.42120 6.65117 6.74742 7.27346 8.80586 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.008892 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.661379 B = 3148.140286 C = 4171.850948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.146 4.146 3 H 0.116 0.884 4 C -0.165 4.165 5 C -0.155 4.155 6 H 0.102 0.898 7 C 0.092 3.908 8 N -0.535 5.535 9 C 0.044 3.956 10 C 0.219 3.781 11 H 0.002 0.998 12 C -0.484 4.484 13 H 0.038 0.962 14 C 0.026 3.974 15 N -0.935 5.935 16 Si 0.922 3.078 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.249 1.249 20 C -0.056 4.056 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.122 4.122 25 C -0.156 4.156 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.003 0.997 36 H 0.267 0.733 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 8.711 12.760 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.164 4.164 3 H 0.134 0.866 4 C -0.202 4.202 5 C -0.173 4.173 6 H 0.120 0.880 7 C -0.036 4.036 8 N -0.259 5.259 9 C -0.104 4.104 10 C 0.113 3.887 11 H 0.019 0.981 12 C -0.523 4.523 13 H 0.057 0.943 14 C -0.173 4.173 15 N -0.574 5.574 16 Si 0.747 3.253 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.173 1.173 20 C -0.057 4.057 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.140 4.140 25 C -0.174 4.174 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.518 8.451 12.885 16.731 hybrid contribution -0.821 0.129 -1.718 1.909 sum -7.339 8.580 11.167 15.880 Atomic orbital electron populations 1.21340 0.92758 1.02202 1.01593 1.22485 0.95629 0.94447 1.03864 0.86557 1.23115 1.02628 1.01108 0.93312 1.22300 1.01010 0.99372 0.94667 0.88008 1.21570 0.93518 0.92422 0.96093 1.62092 1.31430 1.08214 1.24177 1.22116 0.97969 0.97647 0.92710 1.18560 0.91254 0.88617 0.90318 0.98051 1.20793 1.07791 1.28076 0.95599 0.94339 1.25736 0.99507 0.95046 0.97007 1.70016 1.37129 1.41950 1.08313 0.86142 0.81925 0.78626 0.78628 1.19525 1.20938 1.17280 1.20197 0.93158 0.97567 0.94789 1.20941 0.99393 0.98690 0.93581 1.21409 0.96417 0.98099 0.98455 1.21335 0.93933 1.01178 0.99053 1.21287 1.00728 0.98457 0.93562 1.21169 0.95342 1.01637 0.99284 0.93219 0.90511 0.93003 0.89406 0.87971 0.91693 0.96556 0.90502 0.92665 0.97862 0.92358 0.87339 0.84289 0.83394 0.84163 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.19 71.98 0.66 -1.93 16 2 C -0.15 -3.29 6.41 -10.79 -0.07 -3.36 16 3 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.16 -3.99 9.82 30.59 0.30 -3.69 16 5 C -0.16 -4.44 5.70 -10.79 -0.06 -4.50 16 6 H 0.10 2.99 6.39 -2.39 -0.02 2.97 16 7 C 0.09 3.22 4.10 86.30 0.35 3.57 16 8 N -0.54 -22.50 4.07 -905.89 -3.69 -26.19 16 9 C 0.04 1.81 9.09 127.69 1.16 2.97 16 10 C 0.22 10.37 1.61 43.42 0.07 10.44 16 11 H 0.00 0.09 4.63 -2.38 -0.01 0.08 16 12 C -0.48 -27.27 7.20 25.60 0.18 -27.09 16 13 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 14 C 0.03 1.51 5.47 84.66 0.46 1.97 16 15 N -0.93 -57.36 13.96 21.45 0.30 -57.06 16 16 Si 0.92 44.09 26.94 68.60 1.85 45.94 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 19 H -0.25 -11.17 5.75 99.48 0.57 -10.60 16 20 C -0.06 -2.41 3.49 -19.87 -0.07 -2.48 16 21 C -0.11 -4.24 8.91 22.27 0.20 -4.05 16 22 C -0.13 -4.00 10.05 22.27 0.22 -3.77 16 23 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 24 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 25 C -0.16 -6.09 9.67 22.27 0.22 -5.88 16 26 H 0.05 1.12 7.90 -2.39 -0.02 1.10 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.16 7.83 -2.39 -0.02 1.15 16 29 H 0.09 2.21 7.94 -2.39 -0.02 2.19 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.34 6.34 -2.38 -0.02 2.32 16 32 H 0.02 0.59 7.74 -2.39 -0.02 0.57 16 33 H 0.08 2.67 6.37 -2.39 -0.02 2.66 16 34 H 0.05 2.65 6.73 -2.38 -0.02 2.64 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.11 4.54 7.87 -2.91 -0.02 4.52 16 38 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.10 4.08 6.95 -2.91 -0.02 4.06 16 Total: -1.00 -63.77 325.53 3.39 -60.38 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.85 Total: 22.07 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 4.08 Total: -45.13 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -3.39 Total: -83.25 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.85 Total: 45.94 kcal Total: -63.77 3.39 -60.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111732792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.552 kcal (2) G-P(sol) polarization free energy of solvation -63.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds