Wall clock time and date at job start Mon Mar 30 2020 06:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.42906 * 109.47321 * 239.99826 * 2 1 3 13 13 C 1.34910 * 117.00003 * 89.99687 * 12 2 1 14 14 O 1.21646 * 119.99881 * 0.02562 * 13 12 2 15 15 C 1.46265 * 120.00164 * 180.02562 * 13 12 2 16 16 C 1.36801 * 125.45349 * 179.72421 * 15 13 12 17 17 C 1.37340 * 113.30568 * 179.80084 * 16 15 13 18 18 C 1.34058 * 115.08531 * 0.48868 * 17 16 15 19 19 Cl 1.73597 * 124.53157 * 179.72602 * 18 17 16 20 20 S 1.70616 * 110.94187 * 359.72904 * 18 17 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 1.08005 * 123.34929 * 359.97438 * 16 15 13 26 26 H 1.08001 * 122.45976 * 180.24018 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0064 -0.6737 -1.1668 13 6 2.2105 0.0786 -2.2679 14 8 1.9900 1.2745 -2.2370 15 6 2.6969 -0.5438 -3.4990 16 6 2.9364 0.1089 -4.6771 17 6 3.3934 -0.7185 -5.6736 18 6 3.5152 -2.0085 -5.3299 19 17 4.0627 -3.2636 -6.3969 20 16 3.0602 -2.2519 -3.7036 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1609 3.4844 25 1 2.7842 1.1700 -4.8097 26 1 3.6329 -0.3571 -6.6627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686733.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:31 Heat of formation + Delta-G solvation = -64.699531 kcal Electronic energy + Delta-G solvation = -14586.917322 eV Core-core repulsion = 11783.422239 eV Total energy + Delta-G solvation = -2803.495083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70613 -38.02883 -36.76946 -35.74801 -33.29536 -30.25012 -29.17310 -25.45422 -25.19175 -22.59707 -20.47634 -19.38909 -18.44647 -16.76359 -16.28271 -15.92745 -15.22923 -15.02771 -14.35292 -13.87364 -13.47721 -13.04485 -12.80462 -12.31976 -12.07848 -11.63954 -11.41151 -11.27358 -11.12565 -10.89219 -10.86156 -10.41067 -10.31853 -9.95360 -9.60041 -8.93637 -8.81563 -8.73685 -8.52101 -6.21389 -4.28685 0.27319 0.93648 1.70314 2.00571 2.18564 3.22102 3.27883 3.31598 3.33395 3.50117 4.30916 4.99673 5.11814 5.19220 5.45735 5.66237 6.02330 6.08097 6.57736 6.84719 6.85917 7.05674 7.54134 7.67454 7.85501 8.08371 8.51331 8.82443 9.37047 10.86161 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.036551 B = 0.004799 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.875858 B = 5833.158379 C = 6373.737822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.212 3.788 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.343 6.343 13 C 0.524 3.476 14 O -0.502 6.502 15 C -0.232 4.232 16 C -0.058 4.058 17 C -0.137 4.137 18 C -0.186 4.186 19 Cl -0.015 7.015 20 S 0.307 5.693 21 H 0.016 0.984 22 H 0.100 0.900 23 H 0.038 0.962 24 H 0.266 0.734 25 H 0.162 0.838 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -6.032 -15.118 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.159 3.841 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.260 6.260 13 C 0.367 3.633 14 O -0.393 6.393 15 C -0.352 4.352 16 C -0.090 4.090 17 C -0.170 4.170 18 C -0.332 4.332 19 Cl 0.014 6.986 20 S 0.575 5.425 21 H 0.035 0.965 22 H 0.119 0.881 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.179 0.821 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.174 -6.986 -14.051 16.238 hybrid contribution 0.332 0.926 -0.311 1.031 sum 4.506 -6.061 -14.363 16.227 Atomic orbital electron populations 1.22206 0.97506 1.00229 1.01542 1.20337 0.91578 0.94298 0.77856 0.93483 1.21056 1.32582 1.13532 0.88735 0.91168 1.24894 0.94885 0.95081 0.99101 1.69906 1.35976 1.22544 1.24134 0.86215 0.78655 0.79509 0.81746 1.19421 1.20721 1.20686 1.86169 1.75911 1.43009 1.20862 1.19524 0.75194 0.85081 0.83535 1.90845 1.48653 1.15492 1.84291 1.24078 1.14887 0.98320 0.97922 1.20621 0.96999 1.01773 0.89607 1.19967 1.04200 0.90801 1.02002 1.25277 1.12472 0.95040 1.00394 1.98368 1.87916 1.49446 1.62896 1.83686 1.56346 1.04011 0.98454 0.96456 0.88145 0.94332 0.92400 0.82052 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.31 37.16 0.35 -3.62 15 2 C 0.21 5.66 2.51 -27.88 -0.07 5.59 15 3 H 0.05 1.38 7.11 -51.93 -0.37 1.01 15 4 C -0.52 -14.49 8.89 -34.44 -0.31 -14.80 15 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 15 8 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 15 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 12 O -0.34 -8.13 9.59 -41.07 -0.39 -8.53 15 13 C 0.52 11.15 7.87 33.96 0.27 11.42 15 14 O -0.50 -11.85 16.08 -19.38 -0.31 -12.16 15 15 C -0.23 -3.81 6.45 -36.88 -0.24 -4.05 15 16 C -0.06 -0.77 10.01 -40.43 -0.40 -1.18 15 17 C -0.14 -1.53 10.08 -41.38 -0.42 -1.95 15 18 C -0.19 -2.18 6.82 29.26 0.20 -1.98 15 19 Cl -0.01 -0.15 29.27 -51.86 -1.52 -1.67 15 20 S 0.31 4.17 22.92 -107.50 -2.46 1.71 15 21 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 22 H 0.10 2.70 6.07 -51.93 -0.32 2.38 15 23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 25 H 0.16 1.99 8.06 -52.48 -0.42 1.56 15 26 H 0.15 1.30 8.06 -52.49 -0.42 0.88 15 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -29.49 268.96 -7.66 -37.16 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -1.92 Total: -3.07 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.72 Total: -8.95 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.63 Total: -24.41 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.71 Total: -20.69 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -2.46 Total: 1.71 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.49 -7.66 -37.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686733.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.540 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds