Wall clock time and date at job start Mon Mar 30 2020 06:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.42906 * 109.47321 * 239.99826 * 2 1 3 13 13 C 1.34910 * 117.00003 * 89.99687 * 12 2 1 14 14 O 1.21646 * 119.99881 * 0.02562 * 13 12 2 15 15 C 1.46265 * 120.00164 * 180.02562 * 13 12 2 16 16 C 1.36801 * 125.45349 * 179.72421 * 15 13 12 17 17 C 1.37340 * 113.30568 * 179.80084 * 16 15 13 18 18 C 1.34058 * 115.08531 * 0.48868 * 17 16 15 19 19 Cl 1.73597 * 124.53157 * 179.72602 * 18 17 16 20 20 S 1.70616 * 110.94187 * 359.72904 * 18 17 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 1.08005 * 123.34929 * 359.97438 * 16 15 13 26 26 H 1.08001 * 122.45976 * 180.24018 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0064 -0.6737 -1.1668 13 6 2.2105 0.0786 -2.2679 14 8 1.9900 1.2745 -2.2370 15 6 2.6969 -0.5438 -3.4990 16 6 2.9364 0.1089 -4.6771 17 6 3.3934 -0.7185 -5.6736 18 6 3.5152 -2.0085 -5.3299 19 17 4.0627 -3.2636 -6.3969 20 16 3.0602 -2.2519 -3.7036 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1609 3.4844 25 1 2.7842 1.1700 -4.8097 26 1 3.6329 -0.3571 -6.6627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113686733.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:31 Heat of formation + Delta-G solvation = -80.996437 kcal Electronic energy + Delta-G solvation = -14587.624009 eV Core-core repulsion = 11783.422239 eV Total energy + Delta-G solvation = -2804.201770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.006 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.42361 -39.15390 -37.89403 -37.38030 -35.34838 -31.99716 -30.67808 -27.49505 -26.50761 -24.13408 -22.24884 -20.55750 -19.97517 -18.69140 -17.95768 -17.19290 -16.96190 -16.72535 -15.91273 -14.96702 -14.91590 -14.42681 -14.28887 -13.98502 -13.72846 -13.28148 -13.06447 -12.83538 -12.62233 -12.49501 -12.40880 -12.15765 -11.82435 -11.68765 -11.60407 -10.99694 -10.61499 -9.90280 -9.78245 -8.29694 -6.46797 -0.88276 -0.12686 0.64092 1.01017 1.05449 1.42169 1.43003 1.56592 1.82777 1.88054 2.40286 3.01229 3.87091 3.99079 4.21978 4.48398 4.68654 4.76031 4.77936 4.89251 5.06698 5.12574 5.46360 5.59271 5.85711 6.01099 6.56027 6.83177 7.24720 8.78457 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.036551 B = 0.004799 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.875858 B = 5833.158379 C = 6373.737822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.983 3.017 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.271 1.271 12 O -0.350 6.350 13 C 0.522 3.478 14 O -0.538 6.538 15 C -0.281 4.281 16 C -0.031 4.031 17 C -0.131 4.131 18 C -0.169 4.169 19 Cl 0.009 6.991 20 S 0.310 5.690 21 H 0.024 0.976 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.271 0.729 25 H 0.171 0.829 26 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -7.427 -16.405 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.585 4.585 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.806 3.194 9 H -0.186 1.186 10 H -0.201 1.201 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.368 3.632 14 O -0.431 6.431 15 C -0.400 4.400 16 C -0.065 4.065 17 C -0.163 4.163 18 C -0.316 4.316 19 Cl 0.038 6.962 20 S 0.578 5.422 21 H 0.043 0.957 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.189 0.811 26 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.084 -8.400 -15.362 18.231 hybrid contribution 0.103 1.331 -0.104 1.339 sum 5.187 -7.068 -15.466 17.778 Atomic orbital electron populations 1.22036 0.96747 1.00540 1.00957 1.20034 0.92189 0.92433 0.79160 0.97355 1.21326 1.33485 1.13955 0.89776 0.91281 1.25840 0.94678 0.95656 1.02160 1.70021 1.36500 1.23645 1.25222 0.85127 0.78373 0.78447 0.77422 1.18618 1.20127 1.19633 1.86144 1.76395 1.43067 1.21033 1.20208 0.74185 0.84837 0.83982 1.90809 1.50502 1.16899 1.84890 1.23746 1.19129 1.00321 0.96775 1.20917 0.94319 1.02485 0.88770 1.20212 1.03253 0.90038 1.02823 1.25411 1.10557 0.95894 0.99708 1.98390 1.87449 1.48552 1.61827 1.83644 1.56554 1.01998 0.99962 0.95734 0.89924 0.93412 0.91937 0.81147 0.79419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.54 9.31 71.98 0.67 -6.87 15 2 C 0.22 11.95 2.51 29.85 0.07 12.03 15 3 H 0.01 0.54 7.11 -2.39 -0.02 0.52 15 4 C -0.55 -31.14 8.89 25.60 0.23 -30.92 15 5 H 0.07 3.83 7.81 -2.91 -0.02 3.81 15 6 C 0.02 0.91 5.30 84.66 0.45 1.36 15 7 N -0.92 -52.57 11.32 21.45 0.24 -52.32 15 8 Si 0.98 42.70 29.54 68.60 2.03 44.73 15 9 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 15 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 12 O -0.35 -17.17 9.59 -58.25 -0.56 -17.72 15 13 C 0.52 22.96 7.87 69.91 0.55 23.51 15 14 O -0.54 -26.50 16.08 19.36 0.31 -26.19 15 15 C -0.28 -9.13 6.45 24.02 0.15 -8.98 15 16 C -0.03 -0.78 10.01 21.72 0.22 -0.56 15 17 C -0.13 -2.50 10.08 21.11 0.21 -2.29 15 18 C -0.17 -3.48 6.82 66.87 0.46 -3.02 15 19 Cl 0.01 0.16 29.27 -2.72 -0.08 0.08 15 20 S 0.31 8.05 22.92 -56.49 -1.29 6.76 15 21 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.08 4.58 6.07 -2.39 -0.01 4.57 15 23 H 0.05 2.32 8.14 -2.38 -0.02 2.30 15 24 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 25 H 0.17 3.92 8.06 -2.91 -0.02 3.90 15 26 H 0.19 2.29 8.06 -2.91 -0.02 2.27 15 Total: -1.00 -64.91 268.96 4.87 -60.04 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.21 Total: 0.40 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 3.01 Total: -15.75 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.24 Total: -52.32 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.25 Total: -43.92 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -1.29 Total: 6.76 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -0.08 Total: 0.08 kcal Total: -64.91 4.87 -60.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686733.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.961 kcal (2) G-P(sol) polarization free energy of solvation -64.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds