Wall clock time and date at job start Mon Mar 30 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47629 * 2 1 4 4 C 1.53001 * 109.47433 * 119.99983 * 2 1 3 5 5 N 1.46903 * 109.47162 * 294.99702 * 4 2 1 6 6 C 1.46899 * 111.00128 * 179.97438 * 5 4 2 7 7 H 1.09008 * 109.46775 * 325.00041 * 6 5 4 8 8 C 1.50698 * 109.47085 * 85.00106 * 6 5 4 9 9 H 1.07998 * 120.00229 * 55.29653 * 8 6 5 10 10 C 1.37873 * 119.99942 * 235.30061 * 8 6 5 11 11 N 1.31517 * 120.00243 * 173.91823 * 10 8 6 12 12 Si 1.86800 * 120.00177 * 353.91709 * 10 8 6 13 13 H 1.48504 * 109.47326 * 85.76574 * 12 10 8 14 14 H 1.48502 * 109.47379 * 205.76843 * 12 10 8 15 15 H 1.48497 * 109.47049 * 325.76965 * 12 10 8 16 16 C 1.50701 * 109.46927 * 205.00233 * 6 5 4 17 17 C 1.38230 * 119.99859 * 313.71133 * 16 6 5 18 18 C 1.38239 * 119.99839 * 179.79519 * 17 16 6 19 19 C 1.38237 * 119.99991 * 0.43082 * 18 17 16 20 20 C 1.38235 * 119.99796 * 359.82339 * 19 18 17 21 21 C 1.38233 * 119.99738 * 133.98666 * 16 6 5 22 22 C 1.53003 * 109.47051 * 239.99813 * 2 1 3 23 23 C 1.53001 * 117.50032 * 128.62357 * 22 2 1 24 24 C 1.52998 * 60.00033 * 252.51299 * 23 22 2 25 25 H 1.09006 * 109.46843 * 300.00017 * 1 2 3 26 26 H 1.09003 * 109.47272 * 59.99824 * 1 2 3 27 27 H 1.09000 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46722 * 54.99829 * 4 2 1 29 29 H 1.08996 * 109.47288 * 174.99870 * 4 2 1 30 30 H 1.00899 * 110.99334 * 56.04163 * 5 4 2 31 31 H 0.96999 * 119.99933 * 179.97438 * 11 10 8 32 32 H 1.08003 * 120.00250 * 359.97438 * 17 16 6 33 33 H 1.07997 * 119.99870 * 180.27992 * 18 17 16 34 34 H 1.07991 * 120.00062 * 179.83783 * 19 18 17 35 35 H 1.08002 * 119.99991 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.00339 * 359.97438 * 21 16 6 37 37 H 1.08994 * 115.55020 * 274.32885 * 22 2 1 38 38 H 1.09001 * 117.49541 * 0.02562 * 23 22 2 39 39 H 1.08996 * 117.50177 * 145.02131 * 23 22 2 40 40 H 1.09005 * 117.50083 * 252.51153 * 24 23 22 41 41 H 1.09003 * 117.50217 * 107.48962 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6515 0.0375 2.4457 6 6 2.1249 -0.6271 3.6672 7 1 2.0808 -1.7080 3.5332 8 6 3.5469 -0.2129 3.9455 9 1 3.7976 0.8341 4.0307 10 6 4.5279 -1.1707 4.0913 11 7 5.7865 -0.8095 4.2146 12 14 4.0694 -2.9814 4.1137 13 1 4.0001 -3.4918 2.7208 14 1 5.0963 -3.7428 4.8694 15 1 2.7473 -3.1492 4.7686 16 6 1.2494 -0.2286 4.8273 17 6 0.9166 1.0995 5.0178 18 6 0.1101 1.4645 6.0795 19 6 -0.3564 0.5025 6.9558 20 6 -0.0193 -0.8250 6.7683 21 6 0.7838 -1.1905 5.7041 22 6 2.0399 -0.7213 -1.2492 23 6 3.0741 0.0050 -2.1117 24 6 1.6357 -0.1495 -2.6096 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2055 30 1 0.6530 0.1794 2.4753 31 1 6.4765 -1.4833 4.3175 32 1 1.2844 1.8516 4.3355 33 1 -0.1536 2.5015 6.2258 34 1 -0.9843 0.7879 7.7868 35 1 -0.3833 -1.5765 7.4532 36 1 1.0471 -2.2276 5.5576 37 1 2.1266 -1.8045 -1.1642 38 1 3.3914 0.9966 -1.7889 39 1 3.8415 -0.6002 -2.5942 40 1 1.4567 -0.8566 -3.4197 41 1 1.0064 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125368364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:50 Heat of formation + Delta-G solvation = 38.521578 kcal Electronic energy + Delta-G solvation = -19283.571011 eV Core-core repulsion = 16549.449855 eV Total energy + Delta-G solvation = -2734.121156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.75931 -38.02159 -35.56524 -32.95857 -31.70760 -30.24383 -29.64156 -26.81490 -25.47509 -22.87309 -22.12543 -22.04005 -21.29286 -19.77794 -19.39834 -16.97681 -16.37561 -15.54548 -15.04250 -14.66314 -14.46629 -14.23856 -13.86379 -13.43571 -12.98957 -12.79375 -12.72112 -12.46418 -12.30361 -12.02391 -11.84479 -11.43799 -11.09026 -11.02903 -10.89404 -10.62716 -10.49785 -10.43654 -10.05333 -9.95247 -9.77290 -9.63398 -9.50652 -8.63810 -8.25733 -7.91384 -7.31715 -6.14131 -4.10554 2.06076 2.10265 3.20612 3.27797 3.30209 3.96930 4.32940 4.47510 4.73567 5.05946 5.10131 5.13868 5.35808 5.37843 5.49979 5.56838 5.63287 5.66392 5.71315 5.72923 5.84794 5.97609 6.05006 6.13869 6.17647 6.24451 6.25770 6.27435 6.39093 6.41426 6.48543 6.68529 6.73677 6.80522 6.85118 7.11067 7.16717 7.44110 7.51893 7.73241 7.99222 8.32712 8.65455 8.99476 9.48559 10.98601 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.007115 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.462560 B = 3934.666915 C = 5139.774590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 H 0.079 0.921 4 C 0.075 3.925 5 N -0.676 5.676 6 C 0.215 3.785 7 H 0.016 0.984 8 C -0.479 4.479 9 H 0.081 0.919 10 C 0.073 3.927 11 N -0.890 5.890 12 Si 0.868 3.132 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.265 1.265 16 C -0.044 4.044 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.125 4.125 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.178 4.178 24 C -0.184 4.184 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.011 0.989 29 H 0.080 0.920 30 H 0.313 0.687 31 H 0.265 0.735 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 0.140 -5.840 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 H 0.097 0.903 4 C -0.055 4.055 5 N -0.307 5.307 6 C 0.108 3.892 7 H 0.033 0.967 8 C -0.517 4.517 9 H 0.099 0.901 10 C -0.130 4.130 11 N -0.528 5.528 12 Si 0.695 3.305 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.190 1.190 16 C -0.045 4.045 17 C -0.119 4.119 18 C -0.145 4.145 19 C -0.166 4.166 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.215 4.215 24 C -0.221 4.221 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.389 0.491 -5.848 11.932 hybrid contribution -0.542 -1.888 0.212 1.976 sum -10.931 -1.397 -5.636 12.377 Atomic orbital electron populations 1.21814 0.95762 1.01225 1.01313 1.20752 0.94867 0.99841 0.92339 0.90276 1.21813 1.01620 0.93040 0.89000 1.60950 1.16390 1.51418 1.01954 1.18688 0.94301 0.92240 0.83961 0.96660 1.20817 0.88385 0.95643 1.46888 0.90084 1.25068 0.94891 0.98401 0.94644 1.69890 0.99711 1.33935 1.49231 0.87039 0.78501 0.86313 0.78600 1.20175 1.21343 1.19015 1.20577 0.92672 0.93230 0.98055 1.21009 0.97157 0.96248 0.97523 1.21076 0.99088 0.98571 0.95800 1.20884 1.02327 0.93415 0.99931 1.20950 0.99441 0.95961 0.97969 1.21101 0.98699 0.99363 0.95995 1.22312 1.03258 0.99101 0.91386 1.22987 0.92099 1.02336 1.04096 1.22899 0.98464 1.03179 0.97517 0.92324 0.93122 0.93309 0.97069 0.90164 0.86989 0.92531 0.85657 0.87099 0.87343 0.87271 0.87038 0.88281 0.88625 0.89243 0.89439 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.80 37.15 0.33 -1.56 16 2 C -0.06 -0.90 2.75 -90.62 -0.25 -1.15 16 3 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 4 C 0.07 1.41 4.92 -3.82 -0.02 1.39 16 5 N -0.68 -13.61 5.85 -109.18 -0.64 -14.25 16 6 C 0.22 4.94 2.14 -70.02 -0.15 4.79 16 7 H 0.02 0.37 4.29 -51.92 -0.22 0.15 16 8 C -0.48 -13.12 8.84 -34.44 -0.30 -13.43 16 9 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 12 Si 0.87 21.13 26.94 -169.99 -4.58 16.55 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.26 -6.13 5.63 56.52 0.32 -5.82 16 16 C -0.04 -0.94 4.64 -104.63 -0.49 -1.42 16 17 C -0.10 -1.96 9.08 -39.58 -0.36 -2.32 16 18 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 19 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 20 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 21 C -0.13 -2.65 9.67 -39.58 -0.38 -3.03 16 22 C -0.14 -1.95 5.15 -90.62 -0.47 -2.41 16 23 C -0.18 -2.28 10.18 -26.73 -0.27 -2.55 16 24 C -0.18 -2.11 9.73 -26.73 -0.26 -2.37 16 25 H 0.06 0.78 6.68 -51.93 -0.35 0.43 16 26 H 0.05 0.59 7.29 -51.93 -0.38 0.21 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.01 0.21 8.05 -51.93 -0.42 -0.21 16 29 H 0.08 1.75 8.00 -51.93 -0.42 1.34 16 30 H 0.31 5.66 6.41 -39.29 -0.25 5.41 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 2.45 7.91 -52.48 -0.42 2.03 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.11 2.22 6.82 -52.49 -0.36 1.87 16 37 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 38 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.00 7.61 -51.93 -0.40 0.61 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -28.96 330.19 -10.01 -38.97 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.63 Total: 9.68 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -3.91 Total: -29.97 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.13 Total: -40.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.58 Total: 16.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.96 -10.01 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125368364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.494 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds