Wall clock time and date at job start Mon Mar 30 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47629 * 2 1 4 4 C 1.53001 * 109.47433 * 119.99983 * 2 1 3 5 5 N 1.46903 * 109.47162 * 294.99702 * 4 2 1 6 6 C 1.46899 * 111.00128 * 179.97438 * 5 4 2 7 7 H 1.09008 * 109.46775 * 325.00041 * 6 5 4 8 8 C 1.50698 * 109.47085 * 85.00106 * 6 5 4 9 9 H 1.07998 * 120.00229 * 55.29653 * 8 6 5 10 10 C 1.37873 * 119.99942 * 235.30061 * 8 6 5 11 11 N 1.31517 * 120.00243 * 173.91823 * 10 8 6 12 12 Si 1.86800 * 120.00177 * 353.91709 * 10 8 6 13 13 H 1.48504 * 109.47326 * 85.76574 * 12 10 8 14 14 H 1.48502 * 109.47379 * 205.76843 * 12 10 8 15 15 H 1.48497 * 109.47049 * 325.76965 * 12 10 8 16 16 C 1.50701 * 109.46927 * 205.00233 * 6 5 4 17 17 C 1.38230 * 119.99859 * 313.71133 * 16 6 5 18 18 C 1.38239 * 119.99839 * 179.79519 * 17 16 6 19 19 C 1.38237 * 119.99991 * 0.43082 * 18 17 16 20 20 C 1.38235 * 119.99796 * 359.82339 * 19 18 17 21 21 C 1.38233 * 119.99738 * 133.98666 * 16 6 5 22 22 C 1.53003 * 109.47051 * 239.99813 * 2 1 3 23 23 C 1.53001 * 117.50032 * 128.62357 * 22 2 1 24 24 C 1.52998 * 60.00033 * 252.51299 * 23 22 2 25 25 H 1.09006 * 109.46843 * 300.00017 * 1 2 3 26 26 H 1.09003 * 109.47272 * 59.99824 * 1 2 3 27 27 H 1.09000 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46722 * 54.99829 * 4 2 1 29 29 H 1.08996 * 109.47288 * 174.99870 * 4 2 1 30 30 H 1.00899 * 110.99334 * 56.04163 * 5 4 2 31 31 H 0.96999 * 119.99933 * 179.97438 * 11 10 8 32 32 H 1.08003 * 120.00250 * 359.97438 * 17 16 6 33 33 H 1.07997 * 119.99870 * 180.27992 * 18 17 16 34 34 H 1.07991 * 120.00062 * 179.83783 * 19 18 17 35 35 H 1.08002 * 119.99991 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.00339 * 359.97438 * 21 16 6 37 37 H 1.08994 * 115.55020 * 274.32885 * 22 2 1 38 38 H 1.09001 * 117.49541 * 0.02562 * 23 22 2 39 39 H 1.08996 * 117.50177 * 145.02131 * 23 22 2 40 40 H 1.09005 * 117.50083 * 252.51153 * 24 23 22 41 41 H 1.09003 * 117.50217 * 107.48962 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6515 0.0375 2.4457 6 6 2.1249 -0.6271 3.6672 7 1 2.0808 -1.7080 3.5332 8 6 3.5469 -0.2129 3.9455 9 1 3.7976 0.8341 4.0307 10 6 4.5279 -1.1707 4.0913 11 7 5.7865 -0.8095 4.2146 12 14 4.0694 -2.9814 4.1137 13 1 4.0001 -3.4918 2.7208 14 1 5.0963 -3.7428 4.8694 15 1 2.7473 -3.1492 4.7686 16 6 1.2494 -0.2286 4.8273 17 6 0.9166 1.0995 5.0178 18 6 0.1101 1.4645 6.0795 19 6 -0.3564 0.5025 6.9558 20 6 -0.0193 -0.8250 6.7683 21 6 0.7838 -1.1905 5.7041 22 6 2.0399 -0.7213 -1.2492 23 6 3.0741 0.0050 -2.1117 24 6 1.6357 -0.1495 -2.6096 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2055 30 1 0.6530 0.1794 2.4753 31 1 6.4765 -1.4833 4.3175 32 1 1.2844 1.8516 4.3355 33 1 -0.1536 2.5015 6.2258 34 1 -0.9843 0.7879 7.7868 35 1 -0.3833 -1.5765 7.4532 36 1 1.0471 -2.2276 5.5576 37 1 2.1266 -1.8045 -1.1642 38 1 3.3914 0.9966 -1.7889 39 1 3.8415 -0.6002 -2.5942 40 1 1.4567 -0.8566 -3.4197 41 1 1.0064 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125368364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:50 Heat of formation + Delta-G solvation = 22.478286 kcal Electronic energy + Delta-G solvation = -19284.266700 eV Core-core repulsion = 16549.449855 eV Total energy + Delta-G solvation = -2734.816845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23939 -39.19814 -37.08679 -34.72146 -33.41670 -31.65695 -31.02444 -28.62953 -26.90810 -24.46200 -23.46465 -23.10337 -22.65862 -21.45704 -20.61603 -19.04925 -17.82107 -16.81748 -16.68996 -16.08081 -15.93602 -15.82178 -15.17938 -14.87337 -14.74220 -14.28938 -14.19636 -13.94423 -13.68184 -13.41048 -13.28359 -12.88887 -12.63634 -12.47285 -12.24439 -12.09954 -11.93060 -11.75460 -11.70490 -11.49684 -11.47320 -11.06201 -10.75665 -10.70248 -9.67193 -9.41219 -9.02812 -8.32286 -6.32752 0.62994 0.67478 1.24550 1.26537 1.35471 2.26883 2.89333 2.96484 3.14554 3.46081 3.93391 4.00173 4.07318 4.16986 4.20865 4.24166 4.31607 4.40541 4.43670 4.52643 4.62726 4.68284 4.80287 4.83710 4.86778 4.91099 4.99503 5.05814 5.13548 5.23704 5.25963 5.30030 5.33585 5.43046 5.51962 5.52800 5.71347 5.74721 5.93705 6.10903 6.28887 6.50210 6.69396 6.94987 7.30786 8.84749 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.007115 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.462560 B = 3934.666915 C = 5139.774590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 H 0.065 0.935 4 C 0.078 3.922 5 N -0.679 5.679 6 C 0.223 3.777 7 H 0.009 0.991 8 C -0.477 4.477 9 H 0.032 0.968 10 C 0.016 3.984 11 N -0.943 5.943 12 Si 0.927 3.073 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.244 1.244 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.151 4.151 22 C -0.162 4.162 23 C -0.191 4.191 24 C -0.155 4.155 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.015 0.985 29 H 0.040 0.960 30 H 0.329 0.671 31 H 0.265 0.735 32 H 0.112 0.888 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.449 -0.436 -5.599 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 H 0.084 0.916 4 C -0.051 4.051 5 N -0.311 5.311 6 C 0.115 3.885 7 H 0.026 0.974 8 C -0.516 4.516 9 H 0.051 0.949 10 C -0.182 4.182 11 N -0.583 5.583 12 Si 0.752 3.248 13 H -0.194 1.194 14 H -0.212 1.212 15 H -0.168 1.168 16 C -0.075 4.075 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.140 4.140 21 C -0.170 4.170 22 C -0.180 4.180 23 C -0.228 4.228 24 C -0.192 4.192 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.148 0.852 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.734 -0.076 -5.616 14.838 hybrid contribution 0.418 -1.563 0.175 1.627 sum -13.316 -1.639 -5.440 14.477 Atomic orbital electron populations 1.21762 0.93624 1.01851 1.02206 1.20620 0.96542 0.98554 0.91174 0.91633 1.21782 0.99257 0.93809 0.90291 1.60688 1.17539 1.51402 1.01508 1.18440 0.92412 0.91783 0.85873 0.97371 1.20949 0.91270 0.93333 1.46066 0.94930 1.25840 0.94609 1.03092 0.94638 1.70044 1.00953 1.35408 1.51912 0.86069 0.79055 0.80646 0.79057 1.19449 1.21188 1.16837 1.20439 0.94505 0.94555 0.98010 1.21014 0.98392 0.95293 0.98806 1.21427 0.97584 1.00580 0.94536 1.21379 1.01251 0.92600 1.00137 1.21332 0.98013 0.97476 0.97161 1.21204 0.99956 0.98841 0.96982 1.22260 1.04964 0.98861 0.91942 1.23053 0.93328 1.01930 1.04447 1.22981 0.96899 1.03337 0.95980 0.92682 0.90961 0.92765 0.96709 0.94163 0.85188 0.92595 0.87005 0.84029 0.83238 0.84013 0.87596 0.88588 0.89488 0.88604 0.87485 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.80 71.98 0.63 -2.72 16 2 C -0.05 -1.51 2.75 -10.79 -0.03 -1.54 16 3 H 0.07 2.15 7.90 -2.39 -0.02 2.13 16 4 C 0.08 3.04 4.92 86.30 0.42 3.46 16 5 N -0.68 -28.22 5.85 -499.35 -2.92 -31.14 16 6 C 0.22 10.54 2.14 43.42 0.09 10.63 16 7 H 0.01 0.42 4.29 -2.38 -0.01 0.40 16 8 C -0.48 -27.66 8.84 25.60 0.23 -27.43 16 9 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 10 C 0.02 0.95 5.47 84.65 0.46 1.41 16 11 N -0.94 -59.69 13.96 21.45 0.30 -59.40 16 12 Si 0.93 44.78 26.94 68.60 1.85 46.62 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.24 -10.88 5.63 99.48 0.56 -10.32 16 16 C -0.07 -3.15 4.64 -19.87 -0.09 -3.24 16 17 C -0.12 -4.50 9.08 22.27 0.20 -4.30 16 18 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 19 C -0.14 -3.78 10.05 22.27 0.22 -3.56 16 20 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 21 C -0.15 -5.80 9.67 22.27 0.22 -5.59 16 22 C -0.16 -4.33 5.15 -10.79 -0.06 -4.38 16 23 C -0.19 -4.79 10.18 30.59 0.31 -4.48 16 24 C -0.16 -3.21 9.73 30.59 0.30 -2.91 16 25 H 0.05 1.37 6.68 -2.38 -0.02 1.36 16 26 H 0.07 1.47 7.29 -2.39 -0.02 1.45 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.01 0.56 8.05 -2.39 -0.02 0.54 16 29 H 0.04 1.86 8.00 -2.39 -0.02 1.84 16 30 H 0.33 11.99 6.41 -89.69 -0.57 11.41 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.11 4.50 7.91 -2.91 -0.02 4.48 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.15 3.00 8.06 -2.92 -0.02 2.98 16 35 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.11 4.09 6.82 -2.91 -0.02 4.07 16 37 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16 38 H 0.09 2.31 8.05 -2.39 -0.02 2.29 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.10 1.92 7.61 -2.39 -0.02 1.90 16 Total: -1.00 -66.97 330.19 2.86 -64.11 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.28 Total: 31.57 kcal Atomic # 6 Polarization: -55.12 SS G_CDS: 3.36 Total: -51.76 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -2.62 Total: -90.54 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.85 Total: 46.62 kcal Total: -66.97 2.86 -64.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125368364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.586 kcal (2) G-P(sol) polarization free energy of solvation -66.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds