Wall clock time and date at job start Mon Mar 30 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47002 * 2 1 4 4 C 1.53000 * 109.47023 * 120.00456 * 2 1 3 5 5 N 1.46908 * 109.47031 * 294.99654 * 4 2 1 6 6 C 1.46889 * 110.99985 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47519 * 34.99545 * 6 5 4 8 8 C 1.50701 * 109.47115 * 274.99911 * 6 5 4 9 9 H 1.08008 * 119.99730 * 294.98179 * 8 6 5 10 10 C 1.37879 * 120.00304 * 114.71017 * 8 6 5 11 11 N 1.31517 * 119.99776 * 184.83809 * 10 8 6 12 12 Si 1.86799 * 119.99747 * 4.83514 * 10 8 6 13 13 H 1.48507 * 109.46853 * 84.69946 * 12 10 8 14 14 H 1.48499 * 109.46795 * 204.69653 * 12 10 8 15 15 H 1.48497 * 109.47398 * 324.70095 * 12 10 8 16 16 C 1.50701 * 109.47270 * 155.00123 * 6 5 4 17 17 C 1.38233 * 120.00144 * 44.82058 * 16 6 5 18 18 C 1.38230 * 119.99964 * 179.81429 * 17 16 6 19 19 C 1.38242 * 120.00118 * 0.39387 * 18 17 16 20 20 C 1.38235 * 119.99715 * 359.86390 * 19 18 17 21 21 C 1.38235 * 120.00030 * 359.94671 * 20 19 18 22 22 C 1.53000 * 109.46820 * 240.00021 * 2 1 3 23 23 C 1.52998 * 117.49997 * 128.62430 * 22 2 1 24 24 C 1.52994 * 60.00069 * 252.51196 * 23 22 2 25 25 H 1.08989 * 109.47457 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46453 * 300.00150 * 1 2 3 27 27 H 1.08999 * 109.46859 * 59.99698 * 1 2 3 28 28 H 1.08994 * 109.47048 * 174.99916 * 4 2 1 29 29 H 1.09002 * 109.47331 * 54.99338 * 4 2 1 30 30 H 1.00900 * 110.99545 * 303.95436 * 5 4 2 31 31 H 0.97003 * 119.99109 * 179.97438 * 11 10 8 32 32 H 1.07999 * 119.99689 * 0.02562 * 17 16 6 33 33 H 1.08002 * 120.00072 * 180.22984 * 18 17 16 34 34 H 1.07999 * 120.00138 * 179.83172 * 19 18 17 35 35 H 1.07997 * 119.99550 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.99674 * 180.02562 * 21 20 19 37 37 H 1.08999 * 115.55191 * 274.33127 * 22 2 1 38 38 H 1.09004 * 117.49979 * 359.97438 * 23 22 2 39 39 H 1.08998 * 117.50163 * 145.01829 * 23 22 2 40 40 H 1.09007 * 117.49822 * 252.50844 * 24 23 22 41 41 H 1.08998 * 117.50537 * 107.48823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6514 0.0373 2.4457 6 6 2.1258 -0.6266 3.6671 7 1 3.0895 -1.0978 3.4737 8 6 1.1292 -1.6759 4.0878 9 1 0.1373 -1.3841 4.4002 10 6 1.4818 -3.0087 4.0687 11 7 0.5847 -3.9302 4.3439 12 14 3.2336 -3.5054 3.6518 13 1 4.0710 -3.4416 4.8766 14 1 3.2415 -4.8913 3.1185 15 1 3.7810 -2.5783 2.6291 16 6 2.2765 0.3926 4.7668 17 6 1.2862 1.3338 4.9774 18 6 1.4227 2.2663 5.9886 19 6 2.5533 2.2628 6.7841 20 6 3.5460 1.3250 6.5701 21 6 3.4077 0.3900 5.5614 22 6 2.0400 -0.7213 -1.2493 23 6 3.0741 0.0051 -2.1117 24 6 1.6357 -0.1494 -2.6096 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7996 1.2055 29 1 1.6053 -1.7199 1.2951 30 1 1.9883 0.9872 2.3967 31 1 0.8328 -4.8679 4.3301 32 1 0.4043 1.3384 4.3540 33 1 0.6473 2.9994 6.1555 34 1 2.6612 2.9931 7.5724 35 1 4.4294 1.3225 7.1913 36 1 4.1832 -0.3430 5.3945 37 1 2.1267 -1.8045 -1.1643 38 1 3.3909 0.9970 -1.7894 39 1 3.8415 -0.6002 -2.5942 40 1 1.4568 -0.8565 -3.4197 41 1 1.0064 0.7405 -2.6145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125368843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:56 Heat of formation + Delta-G solvation = 39.171898 kcal Electronic energy + Delta-G solvation = -19306.005877 eV Core-core repulsion = 16571.912921 eV Total energy + Delta-G solvation = -2734.092956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.75968 -38.01187 -35.55502 -32.86304 -31.72353 -30.26283 -29.65628 -26.84922 -25.17225 -22.91106 -22.17496 -22.05844 -21.31829 -19.85817 -19.37473 -16.99349 -16.34631 -15.45880 -14.95320 -14.77515 -14.26987 -14.21643 -14.07257 -13.47838 -12.98254 -12.72809 -12.61267 -12.34989 -12.25683 -12.01817 -11.68977 -11.46518 -11.10230 -10.99241 -10.97911 -10.60385 -10.44908 -10.31573 -10.16324 -9.86015 -9.71549 -9.71220 -9.46783 -8.67509 -8.27955 -7.93301 -7.24839 -6.13866 -4.10988 2.03943 2.08370 3.20233 3.26965 3.29908 3.93855 4.32500 4.45652 4.71813 5.03817 5.06791 5.13073 5.36467 5.42707 5.48266 5.54930 5.67372 5.68928 5.75492 5.84443 5.88849 5.97171 6.01869 6.18067 6.22297 6.23389 6.32267 6.39586 6.46383 6.51880 6.56570 6.67414 6.77536 6.86698 6.93664 7.08708 7.14730 7.41879 7.51488 7.70970 8.03140 8.34106 8.64755 8.98777 9.48306 10.98935 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.007102 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.921535 B = 3941.776640 C = 4979.067882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 H 0.060 0.940 4 C 0.074 3.926 5 N -0.674 5.674 6 C 0.209 3.791 7 H 0.021 0.979 8 C -0.476 4.476 9 H 0.080 0.920 10 C 0.074 3.926 11 N -0.891 5.891 12 Si 0.865 3.135 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.263 1.263 16 C -0.042 4.042 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.186 4.186 24 C -0.180 4.180 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.012 0.988 29 H 0.078 0.922 30 H 0.309 0.691 31 H 0.264 0.736 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 9.641 -6.404 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 H 0.079 0.921 4 C -0.055 4.055 5 N -0.304 5.304 6 C 0.103 3.897 7 H 0.038 0.962 8 C -0.514 4.514 9 H 0.098 0.902 10 C -0.129 4.129 11 N -0.529 5.529 12 Si 0.693 3.307 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.189 1.189 16 C -0.043 4.043 17 C -0.120 4.120 18 C -0.145 4.145 19 C -0.165 4.165 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.223 4.223 24 C -0.217 4.217 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.970 9.134 -6.349 11.811 hybrid contribution 1.934 -0.403 -0.134 1.980 sum 5.904 8.731 -6.484 12.374 Atomic orbital electron populations 1.21641 0.94190 1.02033 1.00914 1.20730 0.96688 0.97921 0.92162 0.92121 1.21837 0.95920 0.98886 0.88867 1.61033 1.64162 1.03597 1.01635 1.18801 0.95389 0.90979 0.84573 0.96165 1.20803 0.99450 0.88634 1.42554 0.90226 1.25075 0.96566 0.96586 0.94701 1.69889 1.33367 1.00725 1.48894 0.87077 0.86354 0.77855 0.79405 1.20127 1.21366 1.18854 1.20495 0.92286 0.93714 0.97797 1.21022 0.99001 0.94441 0.97577 1.21084 0.97525 0.99396 0.96461 1.20892 0.95219 0.99922 1.00498 1.20946 0.98841 0.96238 0.98221 1.20996 0.98153 0.98864 0.96906 1.22388 1.02583 0.99421 0.91622 1.22985 0.92433 1.01965 1.04871 1.22883 0.97819 1.03274 0.97705 0.92817 0.91164 0.94342 0.96958 0.90407 0.87415 0.92546 0.85585 0.87088 0.87321 0.87212 0.87284 0.87968 0.89108 0.89363 0.89285 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.92 37.16 0.33 -1.69 16 2 C -0.06 -0.87 2.68 -90.62 -0.24 -1.11 16 3 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 4 C 0.07 1.42 4.83 -3.82 -0.02 1.40 16 5 N -0.67 -13.50 5.27 -109.19 -0.57 -14.07 16 6 C 0.21 4.76 2.18 -70.02 -0.15 4.61 16 7 H 0.02 0.49 3.98 -51.93 -0.21 0.28 16 8 C -0.48 -12.94 8.87 -34.44 -0.31 -13.24 16 9 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 11 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 12 Si 0.87 20.97 27.24 -169.99 -4.63 16.34 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.26 -6.07 6.26 56.52 0.35 -5.72 16 16 C -0.04 -0.87 4.65 -104.62 -0.49 -1.36 16 17 C -0.10 -1.95 9.07 -39.59 -0.36 -2.31 16 18 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 19 C -0.15 -2.33 10.05 -39.58 -0.40 -2.73 16 20 C -0.12 -2.09 10.05 -39.58 -0.40 -2.48 16 21 C -0.13 -2.53 9.67 -39.58 -0.38 -2.91 16 22 C -0.14 -1.97 5.15 -90.62 -0.47 -2.43 16 23 C -0.19 -2.22 10.18 -26.74 -0.27 -2.49 16 24 C -0.18 -2.10 9.73 -26.74 -0.26 -2.36 16 25 H 0.05 0.89 8.14 -51.94 -0.42 0.47 16 26 H 0.07 1.17 7.75 -51.93 -0.40 0.77 16 27 H 0.04 0.51 7.29 -51.93 -0.38 0.13 16 28 H 0.01 0.24 7.94 -51.93 -0.41 -0.17 16 29 H 0.08 1.71 8.00 -51.93 -0.42 1.29 16 30 H 0.31 5.61 8.12 -39.29 -0.32 5.29 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.13 2.42 7.87 -52.49 -0.41 2.00 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 2.07 8.00 -52.48 -0.42 1.65 16 37 H 0.10 1.49 8.11 -51.93 -0.42 1.07 16 38 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.03 7.61 -51.93 -0.40 0.64 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -28.74 334.06 -10.06 -38.80 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.75 Total: 9.43 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -3.91 Total: -29.65 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.20 Total: -39.95 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.63 Total: 16.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.74 -10.06 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125368843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.972 kcal (2) G-P(sol) polarization free energy of solvation -28.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds