Wall clock time and date at job start Mon Mar 30 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47002 * 2 1 4 4 C 1.53000 * 109.47023 * 120.00456 * 2 1 3 5 5 N 1.46908 * 109.47031 * 294.99654 * 4 2 1 6 6 C 1.46889 * 110.99985 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47519 * 34.99545 * 6 5 4 8 8 C 1.50701 * 109.47115 * 274.99911 * 6 5 4 9 9 H 1.08008 * 119.99730 * 294.98179 * 8 6 5 10 10 C 1.37879 * 120.00304 * 114.71017 * 8 6 5 11 11 N 1.31517 * 119.99776 * 184.83809 * 10 8 6 12 12 Si 1.86799 * 119.99747 * 4.83514 * 10 8 6 13 13 H 1.48507 * 109.46853 * 84.69946 * 12 10 8 14 14 H 1.48499 * 109.46795 * 204.69653 * 12 10 8 15 15 H 1.48497 * 109.47398 * 324.70095 * 12 10 8 16 16 C 1.50701 * 109.47270 * 155.00123 * 6 5 4 17 17 C 1.38233 * 120.00144 * 44.82058 * 16 6 5 18 18 C 1.38230 * 119.99964 * 179.81429 * 17 16 6 19 19 C 1.38242 * 120.00118 * 0.39387 * 18 17 16 20 20 C 1.38235 * 119.99715 * 359.86390 * 19 18 17 21 21 C 1.38235 * 120.00030 * 359.94671 * 20 19 18 22 22 C 1.53000 * 109.46820 * 240.00021 * 2 1 3 23 23 C 1.52998 * 117.49997 * 128.62430 * 22 2 1 24 24 C 1.52994 * 60.00069 * 252.51196 * 23 22 2 25 25 H 1.08989 * 109.47457 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46453 * 300.00150 * 1 2 3 27 27 H 1.08999 * 109.46859 * 59.99698 * 1 2 3 28 28 H 1.08994 * 109.47048 * 174.99916 * 4 2 1 29 29 H 1.09002 * 109.47331 * 54.99338 * 4 2 1 30 30 H 1.00900 * 110.99545 * 303.95436 * 5 4 2 31 31 H 0.97003 * 119.99109 * 179.97438 * 11 10 8 32 32 H 1.07999 * 119.99689 * 0.02562 * 17 16 6 33 33 H 1.08002 * 120.00072 * 180.22984 * 18 17 16 34 34 H 1.07999 * 120.00138 * 179.83172 * 19 18 17 35 35 H 1.07997 * 119.99550 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.99674 * 180.02562 * 21 20 19 37 37 H 1.08999 * 115.55191 * 274.33127 * 22 2 1 38 38 H 1.09004 * 117.49979 * 359.97438 * 23 22 2 39 39 H 1.08998 * 117.50163 * 145.01829 * 23 22 2 40 40 H 1.09007 * 117.49822 * 252.50844 * 24 23 22 41 41 H 1.08998 * 117.50537 * 107.48823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6514 0.0373 2.4457 6 6 2.1258 -0.6266 3.6671 7 1 3.0895 -1.0978 3.4737 8 6 1.1292 -1.6759 4.0878 9 1 0.1373 -1.3841 4.4002 10 6 1.4818 -3.0087 4.0687 11 7 0.5847 -3.9302 4.3439 12 14 3.2336 -3.5054 3.6518 13 1 4.0710 -3.4416 4.8766 14 1 3.2415 -4.8913 3.1185 15 1 3.7810 -2.5783 2.6291 16 6 2.2765 0.3926 4.7668 17 6 1.2862 1.3338 4.9774 18 6 1.4227 2.2663 5.9886 19 6 2.5533 2.2628 6.7841 20 6 3.5460 1.3250 6.5701 21 6 3.4077 0.3900 5.5614 22 6 2.0400 -0.7213 -1.2493 23 6 3.0741 0.0051 -2.1117 24 6 1.6357 -0.1494 -2.6096 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7996 1.2055 29 1 1.6053 -1.7199 1.2951 30 1 1.9883 0.9872 2.3967 31 1 0.8328 -4.8679 4.3301 32 1 0.4043 1.3384 4.3540 33 1 0.6473 2.9994 6.1555 34 1 2.6612 2.9931 7.5724 35 1 4.4294 1.3225 7.1913 36 1 4.1832 -0.3430 5.3945 37 1 2.1267 -1.8045 -1.1643 38 1 3.3909 0.9970 -1.7894 39 1 3.8415 -0.6002 -2.5942 40 1 1.4568 -0.8565 -3.4197 41 1 1.0064 0.7405 -2.6145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125368843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:55 Heat of formation + Delta-G solvation = 23.626154 kcal Electronic energy + Delta-G solvation = -19306.679991 eV Core-core repulsion = 16571.912921 eV Total energy + Delta-G solvation = -2734.767070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22074 -39.17758 -37.08008 -34.64185 -33.41943 -31.64984 -31.06260 -28.68300 -26.69441 -24.47086 -23.46443 -23.09542 -22.69000 -21.49838 -20.63713 -19.07680 -17.74803 -16.64778 -16.55492 -16.27212 -15.94283 -15.65140 -15.43586 -14.83636 -14.75944 -14.24664 -14.09624 -13.96317 -13.60294 -13.40250 -13.21181 -12.89969 -12.61487 -12.47823 -12.32337 -12.05169 -11.90756 -11.72878 -11.64480 -11.55942 -11.36615 -11.05138 -10.80564 -10.71998 -9.66753 -9.40703 -8.95786 -8.31340 -6.32245 0.63583 0.67966 1.25306 1.25597 1.34079 2.26677 2.89458 2.96749 3.14785 3.48402 3.91200 3.99219 4.10720 4.15668 4.19272 4.27356 4.37483 4.42967 4.44414 4.55493 4.64231 4.71281 4.80596 4.83218 4.90778 4.96915 5.02227 5.05371 5.12787 5.25288 5.28440 5.30947 5.34524 5.46577 5.53476 5.61275 5.71402 5.75080 5.93360 6.14654 6.29332 6.51183 6.68751 6.96664 7.31471 8.85766 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.007102 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.921535 B = 3941.776640 C = 4979.067882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.045 4.045 3 H 0.076 0.924 4 C 0.079 3.921 5 N -0.675 5.675 6 C 0.218 3.782 7 H 0.013 0.987 8 C -0.473 4.473 9 H 0.032 0.968 10 C 0.018 3.982 11 N -0.944 5.944 12 Si 0.926 3.074 13 H -0.266 1.266 14 H -0.287 1.287 15 H -0.248 1.248 16 C -0.073 4.073 17 C -0.117 4.117 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.149 4.149 22 C -0.168 4.168 23 C -0.175 4.175 24 C -0.164 4.164 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.011 0.989 29 H 0.040 0.960 30 H 0.326 0.674 31 H 0.264 0.736 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 12.292 -6.734 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.064 4.064 3 H 0.095 0.905 4 C -0.051 4.051 5 N -0.306 5.306 6 C 0.110 3.890 7 H 0.031 0.969 8 C -0.512 4.512 9 H 0.050 0.950 10 C -0.180 4.180 11 N -0.584 5.584 12 Si 0.751 3.249 13 H -0.191 1.191 14 H -0.214 1.214 15 H -0.172 1.172 16 C -0.074 4.074 17 C -0.135 4.135 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.140 4.140 21 C -0.167 4.167 22 C -0.187 4.187 23 C -0.212 4.212 24 C -0.201 4.201 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.934 11.819 -6.688 14.820 hybrid contribution 1.250 -1.083 0.027 1.654 sum 7.183 10.736 -6.662 14.534 Atomic orbital electron populations 1.21583 0.94489 1.00778 1.01408 1.20606 0.96321 0.98320 0.91122 0.90549 1.21799 0.95568 0.97536 0.90186 1.60740 1.64321 1.04337 1.01203 1.18543 0.93316 0.90897 0.86249 0.96948 1.20937 0.98508 0.90120 1.41619 0.95008 1.25825 1.00638 0.96566 0.94972 1.70044 1.35668 1.01051 1.51666 0.86089 0.81455 0.77516 0.79814 1.19120 1.21374 1.17232 1.20373 0.94163 0.94731 0.98117 1.21024 0.98297 0.95351 0.98838 1.21428 0.98701 0.98854 0.95201 1.21382 0.93919 0.99725 1.00384 1.21328 1.00208 0.95124 0.97292 1.21147 0.97780 0.99994 0.97828 1.22258 1.05602 0.98735 0.92124 1.23081 0.92728 1.02008 1.03407 1.22976 0.97767 1.03369 0.96003 0.94932 0.92849 0.91570 0.97104 0.94106 0.85638 0.92644 0.86866 0.84094 0.83314 0.83980 0.87501 0.89427 0.88308 0.88333 0.88073 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 8.92 71.98 0.64 -3.25 16 2 C -0.04 -1.36 2.68 -10.79 -0.03 -1.39 16 3 H 0.08 2.09 7.90 -2.39 -0.02 2.07 16 4 C 0.08 3.07 4.83 86.30 0.42 3.48 16 5 N -0.67 -27.75 5.27 -499.36 -2.63 -30.38 16 6 C 0.22 10.18 2.18 43.43 0.09 10.28 16 7 H 0.01 0.62 3.98 -2.38 -0.01 0.61 16 8 C -0.47 -27.17 8.87 25.60 0.23 -26.95 16 9 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 10 C 0.02 1.04 5.47 84.65 0.46 1.51 16 11 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 12 Si 0.93 44.73 27.24 68.60 1.87 46.60 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 15 H -0.25 -11.20 6.26 99.48 0.62 -10.58 16 16 C -0.07 -3.05 4.65 -19.87 -0.09 -3.15 16 17 C -0.12 -4.43 9.07 22.27 0.20 -4.23 16 18 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 19 C -0.14 -3.75 10.05 22.27 0.22 -3.53 16 20 C -0.12 -3.68 10.05 22.27 0.22 -3.45 16 21 C -0.15 -5.60 9.67 22.27 0.22 -5.38 16 22 C -0.17 -4.50 5.15 -10.80 -0.06 -4.56 16 23 C -0.18 -3.74 10.18 30.59 0.31 -3.43 16 24 C -0.16 -3.40 9.73 30.59 0.30 -3.11 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.81 7.75 -2.38 -0.02 1.79 16 27 H 0.07 1.67 7.29 -2.39 -0.02 1.65 16 28 H 0.01 0.42 7.94 -2.39 -0.02 0.40 16 29 H 0.04 1.88 8.00 -2.39 -0.02 1.86 16 30 H 0.33 11.81 8.12 -89.69 -0.73 11.08 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.11 4.48 7.87 -2.91 -0.02 4.46 16 33 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 36 H 0.11 3.96 8.00 -2.91 -0.02 3.94 16 37 H 0.09 2.58 8.11 -2.39 -0.02 2.57 16 38 H 0.10 1.96 8.05 -2.39 -0.02 1.95 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.10 1.94 7.61 -2.39 -0.02 1.92 16 Total: -1.00 -66.38 334.06 3.08 -63.30 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.18 Total: 30.47 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 3.36 Total: -50.72 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.33 Total: -89.64 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.87 Total: 46.60 kcal Total: -66.38 3.08 -63.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125368843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.923 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds