Wall clock time and date at job start Mon Mar 30 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47388 * 2 1 4 4 C 1.53005 * 109.47145 * 240.00264 * 2 1 3 5 5 N 1.46892 * 109.47288 * 65.00074 * 4 2 1 6 6 C 1.46897 * 111.00224 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47209 * 34.99630 * 6 5 4 8 8 C 1.50704 * 109.47007 * 275.00242 * 6 5 4 9 9 H 1.08000 * 120.00021 * 324.75842 * 8 6 5 10 10 C 1.37873 * 120.00025 * 144.76681 * 8 6 5 11 11 N 1.31508 * 120.00430 * 5.10249 * 10 8 6 12 12 Si 1.86805 * 119.99795 * 185.10644 * 10 8 6 13 13 H 1.48501 * 109.47231 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47208 * 119.99670 * 12 10 8 15 15 H 1.48504 * 109.47361 * 239.99616 * 12 10 8 16 16 C 1.50704 * 109.47542 * 154.99925 * 6 5 4 17 17 C 1.38231 * 119.99642 * 45.39601 * 16 6 5 18 18 C 1.38238 * 119.99490 * 179.81233 * 17 16 6 19 19 C 1.38230 * 119.99950 * 0.39588 * 18 17 16 20 20 C 1.38228 * 120.00257 * 359.85580 * 19 18 17 21 21 C 1.38231 * 120.00076 * 359.95914 * 20 19 18 22 22 C 1.53001 * 109.47037 * 120.00012 * 2 1 3 23 23 C 1.52990 * 117.49938 * 299.99970 * 22 2 1 24 24 C 1.52991 * 60.03423 * 252.49768 * 23 22 2 25 25 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47552 * 300.00315 * 1 2 3 27 27 H 1.09007 * 109.47034 * 59.99846 * 1 2 3 28 28 H 1.09000 * 109.46902 * 185.00080 * 4 2 1 29 29 H 1.08997 * 109.46859 * 304.99666 * 4 2 1 30 30 H 1.00901 * 111.00345 * 303.95456 * 5 4 2 31 31 H 0.96999 * 120.00121 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.00117 * 359.97438 * 17 16 6 33 33 H 1.08000 * 119.99560 * 180.23069 * 18 17 16 34 34 H 1.08004 * 119.99620 * 179.83811 * 19 18 17 35 35 H 1.08001 * 120.00034 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99945 * 180.02562 * 21 20 19 37 37 H 1.09004 * 115.54567 * 85.67319 * 22 2 1 38 38 H 1.09003 * 117.49872 * 0.02562 * 23 22 2 39 39 H 1.09006 * 117.50061 * 144.99310 * 23 22 2 40 40 H 1.09002 * 117.49874 * 107.50202 * 24 23 22 41 41 H 1.08999 * 117.50160 * 252.51997 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6270 -3.6672 7 1 2.0808 -1.7079 -3.5333 8 6 3.5468 -0.2129 -3.9455 9 1 3.8715 0.7913 -3.7163 10 6 4.4333 -1.1160 -4.4928 11 7 4.0143 -2.3057 -4.8649 12 14 6.2296 -0.6496 -4.7057 13 1 6.4433 0.7349 -4.2131 14 1 7.0800 -1.5881 -3.9303 15 1 6.5935 -0.7246 -6.1435 16 6 1.2493 -0.2286 -4.8274 17 6 0.9014 1.0971 -5.0073 18 6 0.1015 1.4631 -6.0737 19 6 -0.3571 0.5023 -6.9554 20 6 -0.0134 -0.8240 -6.7724 21 6 0.7895 -1.1896 -5.7083 22 6 2.0400 -0.7213 1.2493 23 6 1.6357 -0.1496 2.6095 24 6 3.0743 0.0053 2.1125 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7994 -1.2056 29 1 1.6054 -1.7197 -1.2952 30 1 0.6529 0.1794 -2.4754 31 1 4.6381 -2.9411 -5.2497 32 1 1.2566 1.8472 -4.3163 33 1 -0.1672 2.4993 -6.2164 34 1 -0.9841 0.7879 -7.7870 35 1 -0.3721 -1.5747 -7.4611 36 1 1.0584 -2.2258 -5.5656 37 1 2.1267 -1.8045 1.1641 38 1 1.0060 0.7402 2.6145 39 1 1.4563 -0.8567 3.4195 40 1 3.3916 0.9972 1.7905 41 1 3.8415 -0.6002 2.5952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125369068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:58 Heat of formation + Delta-G solvation = 34.626063 kcal Electronic energy + Delta-G solvation = -19190.978006 eV Core-core repulsion = 16456.687928 eV Total energy + Delta-G solvation = -2734.290078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.52055 -37.94998 -35.39444 -32.98948 -31.43481 -29.97794 -29.45928 -26.42005 -25.34164 -22.94278 -22.13007 -21.80991 -21.13025 -19.86043 -19.36122 -16.55439 -16.01537 -15.43790 -14.93648 -14.58777 -14.40902 -14.07761 -13.75810 -13.33413 -12.93170 -12.69722 -12.46411 -12.23124 -11.97391 -11.86554 -11.65309 -11.40736 -10.98895 -10.90971 -10.79433 -10.61420 -10.38339 -10.25781 -10.18203 -9.83967 -9.66963 -9.54824 -9.49452 -8.52772 -8.02194 -7.67066 -7.25176 -6.05435 -4.08241 2.31326 2.33848 3.28445 3.36595 3.42001 3.97442 4.39616 4.69701 4.81762 5.09200 5.10716 5.25610 5.40149 5.50221 5.67679 5.69088 5.71284 5.72963 5.79427 5.87445 5.88372 6.04553 6.18840 6.24410 6.28358 6.32630 6.43953 6.44582 6.49202 6.57018 6.78841 6.83970 6.92502 7.01345 7.28184 7.34283 7.41504 7.74007 7.86254 7.93444 8.18385 8.23098 8.73021 9.04428 9.55276 10.99719 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.006988 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.624181 B = 4005.964531 C = 5534.705492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 H 0.075 0.925 4 C 0.081 3.919 5 N -0.685 5.685 6 C 0.235 3.765 7 H 0.040 0.960 8 C -0.483 4.483 9 H 0.064 0.936 10 C 0.061 3.939 11 N -0.889 5.889 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.036 4.036 17 C -0.111 4.111 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.140 4.140 23 C -0.184 4.184 24 C -0.180 4.180 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.014 0.986 30 H 0.313 0.687 31 H 0.261 0.739 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 2.987 7.051 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 H 0.094 0.906 4 C -0.049 4.049 5 N -0.316 5.316 6 C 0.128 3.872 7 H 0.058 0.942 8 C -0.522 4.522 9 H 0.082 0.918 10 C -0.142 4.142 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.037 4.037 17 C -0.130 4.130 18 C -0.153 4.153 19 C -0.171 4.171 20 C -0.149 4.149 21 C -0.129 4.129 22 C -0.158 4.158 23 C -0.221 4.221 24 C -0.217 4.217 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.268 3.233 7.005 9.940 hybrid contribution 0.545 -0.676 -0.425 0.967 sum -5.723 2.557 6.580 9.088 Atomic orbital electron populations 1.21804 0.95781 1.01294 1.01203 1.20782 0.94921 0.99635 0.92589 0.90616 1.21738 1.01176 0.93247 0.88714 1.60803 1.16470 1.51687 1.02609 1.18400 0.92401 0.94152 0.82258 0.94234 1.21044 0.92895 0.98338 1.39886 0.91813 1.25023 0.98957 0.94991 0.95187 1.69930 1.34892 1.06287 1.41564 0.86502 0.84944 0.78728 0.77667 1.19557 1.21027 1.21135 1.20700 0.91788 0.92619 0.98581 1.20991 0.97881 0.96512 0.97579 1.20989 0.99884 0.98223 0.96159 1.20816 1.02733 0.93589 0.99976 1.20982 0.99915 0.95729 0.98314 1.21103 0.96787 0.99996 0.95016 1.22335 1.02958 0.99174 0.91353 1.22896 0.98342 1.03210 0.97682 1.22988 0.92152 1.02232 1.04323 0.93222 0.93283 0.92333 0.90606 0.96759 0.87017 0.92941 0.86261 0.87623 0.87803 0.87634 0.86390 0.88160 0.89070 0.89440 0.88782 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.80 37.16 0.33 -1.59 16 2 C -0.06 -0.91 2.75 -90.62 -0.25 -1.16 16 3 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 4 C 0.08 1.53 4.92 -3.83 -0.02 1.51 16 5 N -0.68 -14.05 5.83 -109.19 -0.64 -14.68 16 6 C 0.23 5.64 2.29 -70.01 -0.16 5.48 16 7 H 0.04 1.07 6.83 -51.93 -0.35 0.71 16 8 C -0.48 -12.95 8.31 -34.44 -0.29 -13.24 16 9 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 10 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 11 N -0.89 -24.87 12.84 55.43 0.71 -24.15 16 12 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.04 -0.80 4.65 -104.62 -0.49 -1.29 16 17 C -0.11 -2.29 9.08 -39.58 -0.36 -2.65 16 18 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 19 C -0.15 -2.71 10.05 -39.59 -0.40 -3.11 16 20 C -0.13 -2.50 10.05 -39.59 -0.40 -2.89 16 21 C -0.11 -2.41 9.67 -39.59 -0.38 -2.80 16 22 C -0.14 -1.88 5.15 -90.59 -0.47 -2.35 16 23 C -0.18 -2.09 9.73 -26.74 -0.26 -2.35 16 24 C -0.18 -2.22 10.18 -26.70 -0.27 -2.50 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.58 7.29 -51.93 -0.38 0.20 16 27 H 0.06 0.80 6.68 -51.93 -0.35 0.46 16 28 H 0.08 1.61 8.00 -51.93 -0.42 1.20 16 29 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 30 H 0.31 5.92 6.38 -39.29 -0.25 5.67 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.12 2.42 7.89 -52.49 -0.41 2.01 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.10 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.70 8.00 -52.49 -0.42 2.28 16 37 H 0.10 1.38 8.11 -51.93 -0.42 0.95 16 38 H 0.09 0.99 7.61 -51.93 -0.39 0.60 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -27.53 336.16 -10.51 -38.04 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.72 Total: 9.62 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -3.90 Total: -30.22 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.08 Total: -38.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.53 -10.51 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125369068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.663 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds