Wall clock time and date at job start Mon Mar 30 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47388 * 2 1 4 4 C 1.53005 * 109.47145 * 240.00264 * 2 1 3 5 5 N 1.46892 * 109.47288 * 65.00074 * 4 2 1 6 6 C 1.46897 * 111.00224 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47209 * 34.99630 * 6 5 4 8 8 C 1.50704 * 109.47007 * 275.00242 * 6 5 4 9 9 H 1.08000 * 120.00021 * 324.75842 * 8 6 5 10 10 C 1.37873 * 120.00025 * 144.76681 * 8 6 5 11 11 N 1.31508 * 120.00430 * 5.10249 * 10 8 6 12 12 Si 1.86805 * 119.99795 * 185.10644 * 10 8 6 13 13 H 1.48501 * 109.47231 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47208 * 119.99670 * 12 10 8 15 15 H 1.48504 * 109.47361 * 239.99616 * 12 10 8 16 16 C 1.50704 * 109.47542 * 154.99925 * 6 5 4 17 17 C 1.38231 * 119.99642 * 45.39601 * 16 6 5 18 18 C 1.38238 * 119.99490 * 179.81233 * 17 16 6 19 19 C 1.38230 * 119.99950 * 0.39588 * 18 17 16 20 20 C 1.38228 * 120.00257 * 359.85580 * 19 18 17 21 21 C 1.38231 * 120.00076 * 359.95914 * 20 19 18 22 22 C 1.53001 * 109.47037 * 120.00012 * 2 1 3 23 23 C 1.52990 * 117.49938 * 299.99970 * 22 2 1 24 24 C 1.52991 * 60.03423 * 252.49768 * 23 22 2 25 25 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47552 * 300.00315 * 1 2 3 27 27 H 1.09007 * 109.47034 * 59.99846 * 1 2 3 28 28 H 1.09000 * 109.46902 * 185.00080 * 4 2 1 29 29 H 1.08997 * 109.46859 * 304.99666 * 4 2 1 30 30 H 1.00901 * 111.00345 * 303.95456 * 5 4 2 31 31 H 0.96999 * 120.00121 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.00117 * 359.97438 * 17 16 6 33 33 H 1.08000 * 119.99560 * 180.23069 * 18 17 16 34 34 H 1.08004 * 119.99620 * 179.83811 * 19 18 17 35 35 H 1.08001 * 120.00034 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99945 * 180.02562 * 21 20 19 37 37 H 1.09004 * 115.54567 * 85.67319 * 22 2 1 38 38 H 1.09003 * 117.49872 * 0.02562 * 23 22 2 39 39 H 1.09006 * 117.50061 * 144.99310 * 23 22 2 40 40 H 1.09002 * 117.49874 * 107.50202 * 24 23 22 41 41 H 1.08999 * 117.50160 * 252.51997 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6270 -3.6672 7 1 2.0808 -1.7079 -3.5333 8 6 3.5468 -0.2129 -3.9455 9 1 3.8715 0.7913 -3.7163 10 6 4.4333 -1.1160 -4.4928 11 7 4.0143 -2.3057 -4.8649 12 14 6.2296 -0.6496 -4.7057 13 1 6.4433 0.7349 -4.2131 14 1 7.0800 -1.5881 -3.9303 15 1 6.5935 -0.7246 -6.1435 16 6 1.2493 -0.2286 -4.8274 17 6 0.9014 1.0971 -5.0073 18 6 0.1015 1.4631 -6.0737 19 6 -0.3571 0.5023 -6.9554 20 6 -0.0134 -0.8240 -6.7724 21 6 0.7895 -1.1896 -5.7083 22 6 2.0400 -0.7213 1.2493 23 6 1.6357 -0.1496 2.6095 24 6 3.0743 0.0053 2.1125 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7994 -1.2056 29 1 1.6054 -1.7197 -1.2952 30 1 0.6529 0.1794 -2.4754 31 1 4.6381 -2.9411 -5.2497 32 1 1.2566 1.8472 -4.3163 33 1 -0.1672 2.4993 -6.2164 34 1 -0.9841 0.7879 -7.7870 35 1 -0.3721 -1.5747 -7.4611 36 1 1.0584 -2.2258 -5.5656 37 1 2.1267 -1.8045 1.1641 38 1 1.0060 0.7402 2.6145 39 1 1.4563 -0.8567 3.4195 40 1 3.3916 0.9972 1.7905 41 1 3.8415 -0.6002 2.5952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125369068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:58 Heat of formation + Delta-G solvation = 21.150295 kcal Electronic energy + Delta-G solvation = -19191.562359 eV Core-core repulsion = 16456.687928 eV Total energy + Delta-G solvation = -2734.874431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08927 -39.15199 -36.96070 -34.73148 -33.10974 -31.53232 -30.92959 -28.23086 -26.84811 -24.58846 -23.32086 -23.08062 -22.57585 -21.58593 -20.57829 -18.49495 -17.61299 -16.84653 -16.60872 -16.01455 -15.84795 -15.73014 -15.13312 -14.73935 -14.66951 -14.15991 -13.93262 -13.68981 -13.60495 -13.33746 -13.16887 -12.87752 -12.63423 -12.40333 -12.22569 -12.08209 -11.87350 -11.71998 -11.61263 -11.50072 -11.35373 -11.01804 -10.70013 -10.56035 -9.57803 -9.30709 -9.04645 -8.11257 -6.21863 0.74351 0.77799 1.36274 1.38369 1.50091 2.39777 2.96401 3.06411 3.26180 3.53287 4.00508 4.03685 4.11474 4.23503 4.28597 4.32127 4.39472 4.46979 4.54356 4.62774 4.71909 4.82453 4.88028 4.94024 4.95978 5.04801 5.07947 5.14261 5.21598 5.27376 5.32215 5.39580 5.45589 5.46707 5.56136 5.72012 5.80293 5.83493 6.09464 6.17950 6.37166 6.47176 6.92621 7.02918 7.44729 8.91666 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.006988 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.624181 B = 4005.964531 C = 5534.705492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 H 0.069 0.931 4 C 0.086 3.914 5 N -0.680 5.680 6 C 0.244 3.756 7 H -0.001 1.001 8 C -0.494 4.494 9 H 0.050 0.950 10 C 0.014 3.986 11 N -0.917 5.917 12 Si 0.951 3.049 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.282 1.282 16 C -0.062 4.062 17 C -0.121 4.121 18 C -0.127 4.127 19 C -0.142 4.142 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.185 4.185 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.002 0.998 30 H 0.324 0.676 31 H 0.260 0.740 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 4.765 7.002 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 H 0.088 0.912 4 C -0.043 4.043 5 N -0.311 5.311 6 C 0.136 3.864 7 H 0.017 0.983 8 C -0.532 4.532 9 H 0.068 0.932 10 C -0.186 4.186 11 N -0.556 5.556 12 Si 0.777 3.223 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.208 1.208 16 C -0.063 4.063 17 C -0.140 4.140 18 C -0.145 4.145 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.180 4.180 23 C -0.196 4.196 24 C -0.222 4.222 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.142 0.858 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.645 5.022 6.969 11.500 hybrid contribution 0.886 -1.209 -0.429 1.560 sum -6.759 3.813 6.540 10.149 Atomic orbital electron populations 1.21761 0.94115 1.01553 1.02101 1.20623 0.96209 0.98649 0.91229 0.91217 1.21690 0.99191 0.93308 0.90145 1.60702 1.17202 1.51172 1.02000 1.18102 0.92146 0.91840 0.84346 0.98347 1.21215 0.94706 0.97640 1.39673 0.93150 1.25705 1.02534 0.95060 0.95253 1.70055 1.35842 1.07088 1.42616 0.85616 0.80685 0.78490 0.77554 1.19220 1.20555 1.20846 1.20579 0.93312 0.94021 0.98395 1.21030 0.98823 0.95279 0.98857 1.21390 0.98081 1.00319 0.94670 1.21291 1.01773 0.92497 1.00433 1.21283 0.98696 0.97472 0.97420 1.21053 0.98788 0.98778 0.96755 1.22244 1.05140 0.98756 0.91885 1.22980 0.97234 1.03342 0.96031 1.23067 0.93111 1.01966 1.04090 0.93286 0.90882 0.92861 0.93828 0.97946 0.85807 0.93076 0.86536 0.83936 0.83585 0.85040 0.88993 0.88912 0.88000 0.87702 0.89101 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.80 71.98 0.63 -2.92 16 2 C -0.05 -1.46 2.75 -10.79 -0.03 -1.49 16 3 H 0.07 2.20 7.90 -2.39 -0.02 2.18 16 4 C 0.09 3.45 4.92 86.31 0.42 3.88 16 5 N -0.68 -29.16 5.83 -499.36 -2.91 -32.07 16 6 C 0.24 12.37 2.29 43.43 0.10 12.47 16 7 H 0.00 -0.08 6.83 -2.38 -0.02 -0.09 16 8 C -0.49 -27.63 8.31 25.60 0.21 -27.42 16 9 H 0.05 2.89 7.82 -2.91 -0.02 2.86 16 10 C 0.01 0.78 5.45 84.65 0.46 1.24 16 11 N -0.92 -53.68 12.84 21.44 0.28 -53.40 16 12 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 C -0.06 -2.88 4.65 -19.87 -0.09 -2.97 16 17 C -0.12 -4.92 9.08 22.27 0.20 -4.72 16 18 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 19 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 20 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 21 C -0.13 -6.06 9.67 22.27 0.22 -5.85 16 22 C -0.16 -4.29 5.15 -10.77 -0.06 -4.35 16 23 C -0.16 -3.25 9.73 30.59 0.30 -2.95 16 24 C -0.19 -4.40 10.18 30.61 0.31 -4.09 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.54 7.29 -2.39 -0.02 1.52 16 27 H 0.05 1.41 6.68 -2.38 -0.02 1.40 16 28 H 0.04 1.99 8.00 -2.39 -0.02 1.97 16 29 H 0.00 0.10 8.05 -2.39 -0.02 0.08 16 30 H 0.32 12.64 6.38 -89.69 -0.57 12.06 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.12 4.70 7.89 -2.91 -0.02 4.68 16 33 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.09 4.51 8.00 -2.91 -0.02 4.48 16 37 H 0.09 2.59 8.11 -2.39 -0.02 2.58 16 38 H 0.10 1.89 7.61 -2.39 -0.02 1.87 16 39 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.09 2.21 8.05 -2.39 -0.02 2.19 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -62.19 336.16 3.16 -59.02 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.42 Total: 31.43 kcal Atomic # 6 Polarization: -55.32 SS G_CDS: 3.35 Total: -51.97 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.63 Total: -85.48 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.19 3.16 -59.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125369068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.175 kcal (2) G-P(sol) polarization free energy of solvation -62.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds