Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47614 * 2 1 4 4 N 1.46904 * 109.47399 * 239.99769 * 2 1 3 5 5 C 1.46900 * 110.99769 * 84.99729 * 4 2 1 6 6 H 1.08997 * 109.47441 * 324.75373 * 5 4 2 7 7 C 1.50707 * 109.46551 * 84.74950 * 5 4 2 8 8 H 1.08003 * 119.99491 * 62.44122 * 7 5 4 9 9 C 1.37876 * 120.00152 * 242.43032 * 7 5 4 10 10 N 1.31510 * 119.99797 * 179.51465 * 9 7 5 11 11 Si 1.86797 * 119.99903 * 359.52198 * 9 7 5 12 12 H 1.48496 * 109.47517 * 84.49338 * 11 9 7 13 13 H 1.48507 * 109.47173 * 204.49413 * 11 9 7 14 14 H 1.48504 * 109.47115 * 324.48848 * 11 9 7 15 15 C 1.50698 * 109.47405 * 204.74784 * 5 4 2 16 16 C 1.38237 * 120.00081 * 314.00749 * 15 5 4 17 17 C 1.38236 * 119.99596 * 179.80859 * 16 15 5 18 18 C 1.38226 * 120.00274 * 0.39518 * 17 16 15 19 19 C 1.38234 * 120.00101 * 359.85537 * 18 17 16 20 20 C 1.38233 * 120.00018 * 359.95896 * 19 18 17 21 21 C 1.52998 * 109.46883 * 120.00305 * 2 1 3 22 22 C 1.53781 * 113.61424 * 283.76035 * 21 2 1 23 23 C 1.53948 * 87.02405 * 220.04934 * 22 21 2 24 24 C 1.53784 * 87.11124 * 25.36514 * 23 22 21 25 25 H 1.09004 * 109.46661 * 55.11122 * 1 2 3 26 26 H 1.09006 * 109.46815 * 175.10449 * 1 2 3 27 27 H 1.08993 * 109.47464 * 295.10738 * 1 2 3 28 28 H 1.00894 * 111.00048 * 208.95715 * 4 2 1 29 29 H 0.97000 * 119.99834 * 180.02562 * 10 9 7 30 30 H 1.07997 * 119.99855 * 359.97438 * 16 15 5 31 31 H 1.08004 * 119.99230 * 180.23143 * 17 16 15 32 32 H 1.08004 * 120.00070 * 179.83762 * 18 17 16 33 33 H 1.08005 * 120.00207 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.99891 * 179.97438 * 20 19 18 35 35 H 1.08998 * 112.85434 * 54.95834 * 21 2 1 36 36 H 1.09002 * 113.61548 * 334.57204 * 22 21 2 37 37 H 1.09003 * 113.61065 * 105.46888 * 22 21 2 38 38 H 1.08996 * 113.53857 * 270.81227 * 23 22 21 39 39 H 1.09002 * 113.74558 * 139.94137 * 23 22 21 40 40 H 1.09000 * 113.61546 * 220.09260 * 24 23 22 41 41 H 1.09002 * 113.61745 * 89.18460 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 1 1.2551 0.9300 -2.2931 7 6 3.3886 0.9739 -2.3192 8 1 4.3221 0.4374 -2.4040 9 6 3.3917 2.3462 -2.1858 10 7 4.5318 3.0009 -2.1520 11 14 1.7767 3.2754 -2.0529 12 1 1.3178 3.2710 -0.6406 13 1 1.9728 4.6762 -2.5052 14 1 0.7555 2.6178 -2.9073 15 6 1.9849 -0.5683 -3.6260 16 6 2.7407 -1.7141 -3.7896 17 6 2.6482 -2.4416 -4.9614 18 6 1.8061 -2.0188 -5.9728 19 6 1.0542 -0.8701 -5.8112 20 6 1.1438 -0.1447 -4.6380 21 6 2.0399 -0.7213 1.2492 22 6 1.9293 0.1176 2.5333 23 6 3.3060 -0.4483 2.9260 24 6 3.5661 -0.6473 1.4234 25 1 -0.3633 0.5878 -0.8430 26 1 -0.3633 -1.0240 -0.0877 27 1 -0.3634 0.4360 0.9305 28 1 2.9173 -1.1206 -1.0287 29 1 4.5340 3.9663 -2.0578 30 1 3.4014 -2.0424 -3.0009 31 1 3.2359 -3.3389 -5.0877 32 1 1.7358 -2.5858 -6.8893 33 1 0.3966 -0.5396 -6.6016 34 1 0.5567 0.7529 -4.5120 35 1 1.6373 -1.7292 1.3501 36 1 1.9341 1.1928 2.3542 37 1 1.1216 -0.1989 3.1933 38 1 3.2494 -1.3813 3.4866 39 1 3.9659 0.2849 3.3899 40 1 4.0781 -1.5806 1.1887 41 1 4.0193 0.2183 0.9402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137750373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = 17.004578 kcal Electronic energy + Delta-G solvation = -19844.631683 eV Core-core repulsion = 17109.577481 eV Total energy + Delta-G solvation = -2735.054203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44270 -39.72706 -37.01176 -34.51491 -32.94785 -31.61299 -30.20082 -28.25729 -26.50449 -26.16984 -24.36560 -23.32060 -21.80771 -21.14330 -20.24841 -19.25510 -17.67467 -16.75599 -16.67703 -16.28458 -15.92772 -15.50287 -15.27489 -14.86472 -14.39135 -14.19787 -14.05718 -13.77017 -13.41177 -13.38939 -13.29770 -12.96536 -12.84703 -12.69930 -12.42294 -12.27806 -11.98009 -11.83199 -11.67068 -11.33153 -11.22821 -11.09577 -10.88849 -10.74686 -9.63332 -9.41197 -8.96512 -8.39246 -6.42596 0.68767 0.75312 1.21677 1.23021 1.30649 2.21166 2.92652 3.18398 3.49543 3.79262 3.83301 3.98480 4.08264 4.16317 4.29115 4.37841 4.42930 4.47257 4.60645 4.60744 4.74237 4.85380 4.88571 4.91690 4.92750 4.97514 5.03275 5.10236 5.13731 5.17122 5.30326 5.35275 5.40520 5.44249 5.48605 5.72310 5.75735 5.81622 5.99218 6.10496 6.33595 6.48239 6.64854 6.84077 7.24659 8.77085 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.008128 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.690219 B = 3444.019473 C = 4210.428709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 H 0.011 0.989 4 N -0.669 5.669 5 C 0.210 3.790 6 H 0.043 0.957 7 C -0.520 4.520 8 H 0.036 0.964 9 C 0.029 3.971 10 N -0.938 5.938 11 Si 0.919 3.081 12 H -0.261 1.261 13 H -0.288 1.288 14 H -0.250 1.250 15 C -0.047 4.047 16 C -0.121 4.121 17 C -0.124 4.124 18 C -0.142 4.142 19 C -0.121 4.121 20 C -0.155 4.155 21 C -0.100 4.100 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.145 4.145 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.332 0.668 29 H 0.265 0.735 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -9.105 3.244 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 H 0.030 0.970 4 N -0.298 5.298 5 C 0.101 3.899 6 H 0.061 0.939 7 C -0.559 4.559 8 H 0.054 0.946 9 C -0.170 4.170 10 N -0.577 5.577 11 Si 0.745 3.255 12 H -0.186 1.186 13 H -0.214 1.214 14 H -0.174 1.174 15 C -0.048 4.048 16 C -0.139 4.139 17 C -0.142 4.142 18 C -0.160 4.160 19 C -0.139 4.139 20 C -0.173 4.173 21 C -0.118 4.118 22 C -0.169 4.169 23 C -0.166 4.166 24 C -0.183 4.183 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.536 -9.178 3.099 12.911 hybrid contribution 0.791 1.803 0.106 1.972 sum -7.746 -7.375 3.205 11.165 Atomic orbital electron populations 1.21746 0.94574 1.02173 1.00529 1.21445 0.95486 0.95163 0.90069 0.97046 1.61095 1.32296 1.32463 1.03980 1.18543 0.94279 0.89996 0.87074 0.93882 1.21663 0.92776 0.92244 1.49252 0.94551 1.25783 0.98745 0.98513 0.94007 1.70025 1.27545 1.08577 1.51580 0.86196 0.81530 0.77928 0.79881 1.18634 1.21387 1.17409 1.20254 0.93941 0.94372 0.96278 1.20926 0.99409 0.95434 0.98168 1.21388 0.99261 1.00219 0.93328 1.21321 0.97574 0.97338 0.99800 1.21301 1.00104 0.95703 0.96825 1.21111 1.00569 1.00431 0.95231 1.22656 0.95596 1.00116 0.93470 1.22898 0.98409 0.98804 0.96782 1.22802 0.96770 1.01786 0.95238 1.22870 0.96597 1.01144 0.97676 0.95215 0.91206 0.91372 0.85094 0.92549 0.87364 0.84203 0.83471 0.84181 0.87864 0.87540 0.92130 0.89388 0.88072 0.91874 0.91162 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.35 71.98 0.67 -3.66 16 2 C 0.09 3.31 2.14 44.91 0.10 3.41 16 3 H 0.01 0.52 6.33 -2.39 -0.02 0.50 16 4 N -0.67 -27.27 5.65 -477.17 -2.70 -29.97 16 5 C 0.21 9.79 1.97 43.42 0.09 9.88 16 6 H 0.04 2.08 3.36 -2.39 -0.01 2.07 16 7 C -0.52 -28.91 8.48 25.60 0.22 -28.69 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 C 0.03 1.66 5.47 84.66 0.46 2.12 16 10 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 11 Si 0.92 44.34 26.00 68.60 1.78 46.13 16 12 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 14 H -0.25 -11.38 6.47 99.48 0.64 -10.74 16 15 C -0.05 -2.06 4.93 -19.87 -0.10 -2.16 16 16 C -0.12 -4.74 9.27 22.27 0.21 -4.54 16 17 C -0.12 -3.99 10.05 22.27 0.22 -3.76 16 18 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 19 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 20 C -0.15 -6.17 9.67 22.27 0.22 -5.96 16 21 C -0.10 -3.02 3.19 -10.27 -0.03 -3.05 16 22 C -0.13 -3.49 7.36 31.18 0.23 -3.26 16 23 C -0.13 -3.24 8.09 31.18 0.25 -2.99 16 24 C -0.15 -4.63 6.80 31.12 0.21 -4.42 16 25 H 0.03 1.04 7.49 -2.38 -0.02 1.02 16 26 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.07 1.91 7.90 -2.39 -0.02 1.89 16 28 H 0.33 13.73 6.81 -89.70 -0.61 13.12 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.11 4.24 7.45 -2.91 -0.02 4.21 16 31 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 34 H 0.10 4.11 8.00 -2.91 -0.02 4.09 16 35 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.06 1.83 8.05 -2.39 -0.02 1.81 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 Total: -1.00 -63.95 326.03 2.90 -61.05 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.32 Total: 35.08 kcal Atomic # 6 Polarization: -57.94 SS G_CDS: 3.19 Total: -54.75 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.40 Total: -87.51 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.78 Total: 46.13 kcal Total: -63.95 2.90 -61.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137750373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.051 kcal (2) G-P(sol) polarization free energy of solvation -63.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds