Wall clock time and date at job start Mon Mar 30 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46987 * 2 1 4 4 N 1.46898 * 109.47165 * 120.00238 * 2 1 3 5 5 C 1.46898 * 110.99791 * 274.99582 * 4 2 1 6 6 H 1.08996 * 109.47122 * 325.00069 * 5 4 2 7 7 C 1.50701 * 109.47128 * 85.00166 * 5 4 2 8 8 H 1.08003 * 119.99795 * 54.85795 * 7 5 4 9 9 C 1.37873 * 119.99949 * 234.85588 * 7 5 4 10 10 N 1.31519 * 119.99747 * 174.19157 * 9 7 5 11 11 Si 1.86794 * 120.00361 * 354.19621 * 9 7 5 12 12 H 1.48504 * 109.47245 * 86.07389 * 11 9 7 13 13 H 1.48498 * 109.47372 * 206.07831 * 11 9 7 14 14 H 1.48504 * 109.46786 * 326.08027 * 11 9 7 15 15 C 1.50700 * 109.47240 * 205.00114 * 5 4 2 16 16 C 1.38236 * 119.99956 * 313.90060 * 15 5 4 17 17 C 1.38238 * 120.00353 * 179.78498 * 16 15 5 18 18 C 1.38233 * 119.99553 * 0.44464 * 17 16 15 19 19 C 1.38236 * 120.00068 * 359.80594 * 18 17 16 20 20 C 1.38227 * 120.00279 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.46541 * 239.99994 * 2 1 3 22 22 C 1.53785 * 113.60968 * 157.49864 * 21 2 1 23 23 C 1.53787 * 87.07761 * 220.01704 * 22 21 2 24 24 C 1.53775 * 113.61560 * 60.00078 * 21 2 1 25 25 H 1.08996 * 109.47373 * 59.99902 * 1 2 3 26 26 H 1.09002 * 109.47592 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46880 * 299.99618 * 1 2 3 28 28 H 1.00905 * 111.00015 * 151.04162 * 4 2 1 29 29 H 0.97004 * 120.00124 * 180.02562 * 10 9 7 30 30 H 1.08004 * 120.00079 * 359.97438 * 16 15 5 31 31 H 1.07991 * 120.00198 * 180.27213 * 17 16 15 32 32 H 1.08005 * 120.00427 * 179.83173 * 18 17 16 33 33 H 1.08004 * 120.00212 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.00981 * 179.97438 * 20 19 18 35 35 H 1.09000 * 112.84954 * 288.79987 * 21 2 1 36 36 H 1.08996 * 113.61701 * 334.56299 * 22 21 2 37 37 H 1.08998 * 113.61311 * 105.47201 * 22 21 2 38 38 H 1.09004 * 113.61120 * 270.88211 * 23 22 21 39 39 H 1.08998 * 113.68829 * 139.99413 * 23 22 21 40 40 H 1.08999 * 113.61451 * 254.52526 * 24 21 2 41 41 H 1.08998 * 113.61716 * 25.43394 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 1 2.3649 1.2176 2.0029 7 6 0.7325 0.2858 3.0134 8 1 0.2507 -0.6223 3.3447 9 6 0.1124 1.5030 3.2005 10 7 -1.1125 1.5505 3.6770 11 14 1.0119 3.0844 2.7771 12 1 0.8187 3.3936 1.3376 13 1 0.4714 4.1966 3.5993 14 1 2.4608 2.9200 3.0579 15 6 3.1066 -0.2776 3.3327 16 6 3.1280 -1.6130 3.6895 17 6 4.0702 -2.0727 4.5906 18 6 4.9852 -1.1953 5.1418 19 6 4.9605 0.1410 4.7889 20 6 4.0213 0.5999 3.8845 21 6 2.0399 -0.7213 -1.2493 22 6 3.4725 -0.3277 -1.6461 23 6 2.9920 -0.3573 -3.1067 24 6 1.5809 -0.0723 -2.5657 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.9173 -1.1206 1.0286 29 1 -1.5490 2.4068 3.8083 30 1 2.4105 -2.2977 3.2620 31 1 4.0897 -3.1168 4.8659 32 1 5.7197 -1.5539 5.8478 33 1 5.6757 0.8265 5.2193 34 1 4.0016 1.6440 3.6091 35 1 1.8757 -1.7982 -1.2129 36 1 3.7638 0.6648 -1.3024 37 1 4.2150 -1.0916 -1.4152 38 1 3.0894 -1.3350 -3.5786 39 1 3.3967 0.4497 -3.7174 40 1 0.7964 -0.6300 -3.0772 41 1 1.3551 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137750432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:07 Heat of formation + Delta-G solvation = 37.780330 kcal Electronic energy + Delta-G solvation = -19775.528343 eV Core-core repulsion = 17041.375045 eV Total energy + Delta-G solvation = -2734.153298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.14919 -38.46497 -35.48476 -32.43573 -31.38451 -30.22352 -28.48728 -26.80101 -25.29739 -24.76356 -22.59020 -21.93235 -20.40560 -19.66193 -19.06905 -16.96579 -16.32008 -15.50565 -15.12018 -14.67875 -14.32695 -14.14525 -13.83408 -13.12625 -12.81875 -12.76574 -12.58846 -12.29289 -12.17111 -11.93822 -11.90376 -11.21975 -11.13188 -10.95377 -10.80056 -10.74861 -10.49031 -10.27817 -10.01039 -9.99089 -9.77227 -9.59680 -9.44684 -8.55165 -8.25135 -7.90182 -7.30227 -6.13992 -4.07928 2.06738 2.11073 3.20485 3.27522 3.30371 4.32935 4.48311 4.75500 4.84643 4.93612 5.02864 5.15770 5.36325 5.50355 5.57405 5.69154 5.70611 5.82615 5.89148 5.92554 6.00684 6.01819 6.08367 6.20320 6.23876 6.27525 6.37723 6.46175 6.56687 6.65108 6.72240 6.75294 6.79045 6.98687 7.11586 7.16559 7.45800 7.49729 7.54819 7.73965 8.05754 8.35088 8.68126 8.99537 9.48525 10.98351 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.008755 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.154419 B = 3197.441074 C = 4392.493083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.108 3.892 3 H 0.027 0.973 4 N -0.671 5.671 5 C 0.215 3.785 6 H 0.016 0.984 7 C -0.472 4.472 8 H 0.081 0.919 9 C 0.074 3.926 10 N -0.890 5.890 11 Si 0.863 3.137 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.265 1.265 15 C -0.044 4.044 16 C -0.101 4.101 17 C -0.127 4.127 18 C -0.147 4.147 19 C -0.125 4.125 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.132 4.132 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.314 0.686 29 H 0.264 0.736 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -3.264 -7.312 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 H 0.045 0.955 4 N -0.302 5.302 5 C 0.108 3.892 6 H 0.033 0.967 7 C -0.510 4.510 8 H 0.099 0.901 9 C -0.129 4.129 10 N -0.528 5.528 11 Si 0.691 3.309 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.190 1.190 15 C -0.045 4.045 16 C -0.119 4.119 17 C -0.146 4.146 18 C -0.166 4.166 19 C -0.143 4.143 20 C -0.152 4.152 21 C -0.128 4.128 22 C -0.179 4.179 23 C -0.180 4.180 24 C -0.170 4.170 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.074 0.926 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.866 -3.373 -7.086 11.841 hybrid contribution 1.132 1.590 -0.239 1.966 sum 9.998 -1.783 -7.325 12.522 Atomic orbital electron populations 1.21874 0.94301 1.01792 1.01811 1.21341 0.96577 0.94173 0.88056 0.95532 1.60993 1.30540 1.34742 1.03886 1.18777 0.93969 0.89740 0.86754 0.96680 1.20780 0.99137 0.94675 1.36444 0.90056 1.25021 0.94492 0.98442 0.94906 1.69889 1.11851 1.25743 1.45281 0.87120 0.80769 0.84251 0.78785 1.20107 1.21407 1.19032 1.20602 0.92761 0.93165 0.97985 1.21011 0.97774 0.95873 0.97260 1.21073 0.96400 0.98924 0.98153 1.20879 1.00243 0.93864 1.01580 1.20945 0.99153 0.95571 0.98663 1.21101 0.95942 0.99435 0.98724 1.22778 0.95041 1.00549 0.94436 1.22988 0.97218 1.01530 0.96212 1.22800 0.97426 1.01297 0.96453 1.22868 0.96323 1.01068 0.96767 0.95045 0.93143 0.89233 0.86954 0.92552 0.85652 0.87135 0.87382 0.87317 0.87084 0.88865 0.90600 0.91805 0.90546 0.92053 0.91727 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.97 37.16 0.33 -2.49 16 2 C 0.11 2.02 2.44 -67.71 -0.17 1.86 16 3 H 0.03 0.54 7.23 -51.93 -0.38 0.16 16 4 N -0.67 -13.37 5.71 -102.18 -0.58 -13.95 16 5 C 0.21 4.86 2.13 -70.02 -0.15 4.71 16 6 H 0.02 0.37 3.91 -51.93 -0.20 0.16 16 7 C -0.47 -12.57 7.21 -34.44 -0.25 -12.82 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 C 0.07 2.04 4.64 -17.82 -0.08 1.96 16 10 N -0.89 -26.18 13.96 55.43 0.77 -25.40 16 11 Si 0.86 20.91 26.95 -169.99 -4.58 16.33 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.13 5.56 56.52 0.31 -5.82 16 15 C -0.04 -0.93 4.64 -104.62 -0.49 -1.41 16 16 C -0.10 -1.95 9.08 -39.58 -0.36 -2.31 16 17 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 18 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 19 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 20 C -0.13 -2.65 9.67 -39.58 -0.38 -3.04 16 21 C -0.11 -1.62 3.13 -89.81 -0.28 -1.90 16 22 C -0.14 -1.87 7.56 -25.91 -0.20 -2.07 16 23 C -0.14 -1.65 8.08 -25.92 -0.21 -1.86 16 24 C -0.13 -1.74 6.68 -25.92 -0.17 -1.91 16 25 H 0.03 0.56 7.45 -51.93 -0.39 0.17 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.09 2.17 5.57 -51.92 -0.29 1.88 16 28 H 0.31 5.70 7.71 -39.29 -0.30 5.39 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.13 2.44 7.91 -52.48 -0.42 2.02 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.11 2.22 6.77 -52.49 -0.36 1.86 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -28.03 322.78 -9.73 -37.76 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.61 Total: 9.56 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -3.59 Total: -29.15 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.19 Total: -39.36 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.58 Total: 16.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.03 -9.73 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137750432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.540 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds