Wall clock time and date at job start Mon Mar 30 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46987 * 2 1 4 4 N 1.46898 * 109.47165 * 120.00238 * 2 1 3 5 5 C 1.46898 * 110.99791 * 274.99582 * 4 2 1 6 6 H 1.08996 * 109.47122 * 325.00069 * 5 4 2 7 7 C 1.50701 * 109.47128 * 85.00166 * 5 4 2 8 8 H 1.08003 * 119.99795 * 54.85795 * 7 5 4 9 9 C 1.37873 * 119.99949 * 234.85588 * 7 5 4 10 10 N 1.31519 * 119.99747 * 174.19157 * 9 7 5 11 11 Si 1.86794 * 120.00361 * 354.19621 * 9 7 5 12 12 H 1.48504 * 109.47245 * 86.07389 * 11 9 7 13 13 H 1.48498 * 109.47372 * 206.07831 * 11 9 7 14 14 H 1.48504 * 109.46786 * 326.08027 * 11 9 7 15 15 C 1.50700 * 109.47240 * 205.00114 * 5 4 2 16 16 C 1.38236 * 119.99956 * 313.90060 * 15 5 4 17 17 C 1.38238 * 120.00353 * 179.78498 * 16 15 5 18 18 C 1.38233 * 119.99553 * 0.44464 * 17 16 15 19 19 C 1.38236 * 120.00068 * 359.80594 * 18 17 16 20 20 C 1.38227 * 120.00279 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.46541 * 239.99994 * 2 1 3 22 22 C 1.53785 * 113.60968 * 157.49864 * 21 2 1 23 23 C 1.53787 * 87.07761 * 220.01704 * 22 21 2 24 24 C 1.53775 * 113.61560 * 60.00078 * 21 2 1 25 25 H 1.08996 * 109.47373 * 59.99902 * 1 2 3 26 26 H 1.09002 * 109.47592 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46880 * 299.99618 * 1 2 3 28 28 H 1.00905 * 111.00015 * 151.04162 * 4 2 1 29 29 H 0.97004 * 120.00124 * 180.02562 * 10 9 7 30 30 H 1.08004 * 120.00079 * 359.97438 * 16 15 5 31 31 H 1.07991 * 120.00198 * 180.27213 * 17 16 15 32 32 H 1.08005 * 120.00427 * 179.83173 * 18 17 16 33 33 H 1.08004 * 120.00212 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.00981 * 179.97438 * 20 19 18 35 35 H 1.09000 * 112.84954 * 288.79987 * 21 2 1 36 36 H 1.08996 * 113.61701 * 334.56299 * 22 21 2 37 37 H 1.08998 * 113.61311 * 105.47201 * 22 21 2 38 38 H 1.09004 * 113.61120 * 270.88211 * 23 22 21 39 39 H 1.08998 * 113.68829 * 139.99413 * 23 22 21 40 40 H 1.08999 * 113.61451 * 254.52526 * 24 21 2 41 41 H 1.08998 * 113.61716 * 25.43394 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 1 2.3649 1.2176 2.0029 7 6 0.7325 0.2858 3.0134 8 1 0.2507 -0.6223 3.3447 9 6 0.1124 1.5030 3.2005 10 7 -1.1125 1.5505 3.6770 11 14 1.0119 3.0844 2.7771 12 1 0.8187 3.3936 1.3376 13 1 0.4714 4.1966 3.5993 14 1 2.4608 2.9200 3.0579 15 6 3.1066 -0.2776 3.3327 16 6 3.1280 -1.6130 3.6895 17 6 4.0702 -2.0727 4.5906 18 6 4.9852 -1.1953 5.1418 19 6 4.9605 0.1410 4.7889 20 6 4.0213 0.5999 3.8845 21 6 2.0399 -0.7213 -1.2493 22 6 3.4725 -0.3277 -1.6461 23 6 2.9920 -0.3573 -3.1067 24 6 1.5809 -0.0723 -2.5657 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.9173 -1.1206 1.0286 29 1 -1.5490 2.4068 3.8083 30 1 2.4105 -2.2977 3.2620 31 1 4.0897 -3.1168 4.8659 32 1 5.7197 -1.5539 5.8478 33 1 5.6757 0.8265 5.2193 34 1 4.0016 1.6440 3.6091 35 1 1.8757 -1.7982 -1.2129 36 1 3.7638 0.6648 -1.3024 37 1 4.2150 -1.0916 -1.4152 38 1 3.0894 -1.3350 -3.5786 39 1 3.3967 0.4497 -3.7174 40 1 0.7964 -0.6300 -3.0772 41 1 1.3551 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137750432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:07 Heat of formation + Delta-G solvation = 22.188424 kcal Electronic energy + Delta-G solvation = -19776.204459 eV Core-core repulsion = 17041.375045 eV Total energy + Delta-G solvation = -2734.829414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49768 -39.78029 -37.04018 -34.40594 -32.97934 -31.63817 -30.01768 -28.64619 -26.50117 -25.98037 -24.25675 -23.36148 -21.78587 -21.31851 -20.24115 -19.00517 -17.76904 -16.83891 -16.50555 -16.29980 -15.88283 -15.56840 -15.32884 -14.86324 -14.46148 -14.21837 -14.08039 -13.71335 -13.45813 -13.35333 -13.28482 -12.94877 -12.61738 -12.46638 -12.39865 -12.34180 -12.01676 -11.76282 -11.55623 -11.46000 -11.30945 -11.09304 -10.92527 -10.55324 -9.66737 -9.39631 -8.99726 -8.28204 -6.24539 0.63596 0.68394 1.24721 1.26860 1.34426 2.28710 2.94192 3.16792 3.47595 3.75140 3.82434 3.95797 4.07134 4.17083 4.25141 4.32815 4.43093 4.46270 4.51549 4.61419 4.81295 4.85991 4.87216 4.89183 4.94761 4.95880 5.01831 5.09333 5.16496 5.23245 5.28781 5.34720 5.41174 5.56294 5.63440 5.70787 5.73495 5.76962 5.96291 6.17947 6.30222 6.56730 6.74922 6.99534 7.35748 8.88495 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.008755 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.154419 B = 3197.441074 C = 4392.493083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.109 3.891 3 H 0.011 0.989 4 N -0.673 5.673 5 C 0.224 3.776 6 H 0.006 0.994 7 C -0.461 4.461 8 H 0.034 0.966 9 C 0.024 3.976 10 N -0.941 5.941 11 Si 0.915 3.085 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.247 1.247 15 C -0.073 4.073 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.123 4.123 20 C -0.152 4.152 21 C -0.110 4.110 22 C -0.141 4.141 23 C -0.127 4.127 24 C -0.134 4.134 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.327 0.673 29 H 0.263 0.737 30 H 0.113 0.887 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.883 -3.857 -8.025 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 H 0.029 0.971 4 N -0.304 5.304 5 C 0.115 3.885 6 H 0.023 0.977 7 C -0.500 4.500 8 H 0.052 0.948 9 C -0.173 4.173 10 N -0.582 5.582 11 Si 0.741 3.259 12 H -0.195 1.195 13 H -0.215 1.215 14 H -0.171 1.171 15 C -0.074 4.074 16 C -0.134 4.134 17 C -0.141 4.141 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.171 4.171 21 C -0.129 4.129 22 C -0.178 4.178 23 C -0.164 4.164 24 C -0.172 4.172 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.118 -3.982 -7.814 14.959 hybrid contribution 0.166 1.623 0.030 1.632 sum 12.284 -2.359 -7.783 14.732 Atomic orbital electron populations 1.21765 0.95773 1.01117 1.00549 1.21358 0.95344 0.93913 0.89439 0.97090 1.60738 1.31408 1.34369 1.03916 1.18517 0.92267 0.89978 0.87697 0.97653 1.20815 1.00860 0.92693 1.35638 0.94801 1.25652 0.94973 1.01521 0.95203 1.70031 1.13686 1.26307 1.48127 0.86256 0.80581 0.80397 0.78666 1.19536 1.21515 1.17150 1.20481 0.93848 0.94421 0.98678 1.21018 0.98718 0.95122 0.98565 1.21425 0.95236 1.00771 0.96713 1.21363 1.00004 0.93140 1.00913 1.21315 0.98544 0.96824 0.97357 1.21195 0.96986 0.98968 0.99969 1.22749 0.96778 1.00317 0.93058 1.22973 0.96112 1.01274 0.97469 1.22751 0.95445 1.02727 0.95468 1.22887 0.97987 1.00546 0.95746 0.92957 0.93432 0.93754 0.85443 0.92758 0.86888 0.84075 0.83333 0.84163 0.87816 0.88521 0.91539 0.90738 0.88813 0.90760 0.90714 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.97 71.98 0.65 -4.94 16 2 C 0.11 4.12 2.44 44.92 0.11 4.23 16 3 H 0.01 0.46 7.23 -2.39 -0.02 0.44 16 4 N -0.67 -27.41 5.71 -477.20 -2.73 -30.14 16 5 C 0.22 10.38 2.13 43.42 0.09 10.48 16 6 H 0.01 0.28 3.91 -2.39 -0.01 0.27 16 7 C -0.46 -25.93 7.21 25.60 0.18 -25.74 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.02 1.41 4.64 84.65 0.39 1.80 16 10 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 11 Si 0.92 44.41 26.95 68.60 1.85 46.26 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.25 -11.17 5.56 99.48 0.55 -10.62 16 15 C -0.07 -3.09 4.64 -19.86 -0.09 -3.18 16 16 C -0.12 -4.43 9.08 22.27 0.20 -4.23 16 17 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 18 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 19 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 20 C -0.15 -5.88 9.67 22.27 0.22 -5.67 16 21 C -0.11 -3.13 3.13 -10.27 -0.03 -3.16 16 22 C -0.14 -3.41 7.56 31.12 0.24 -3.17 16 23 C -0.13 -2.53 8.08 31.12 0.25 -2.28 16 24 C -0.13 -3.25 6.68 31.12 0.21 -3.04 16 25 H 0.05 1.90 7.45 -2.39 -0.02 1.88 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 2.25 5.57 -2.38 -0.01 2.24 16 28 H 0.33 11.89 7.71 -89.69 -0.69 11.20 16 29 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.11 4.50 7.91 -2.91 -0.02 4.48 16 31 H 0.14 3.45 8.06 -2.92 -0.02 3.43 16 32 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.10 4.06 6.77 -2.91 -0.02 4.04 16 35 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.07 1.74 7.96 -2.39 -0.02 1.73 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 Total: -1.00 -64.71 322.78 2.66 -62.05 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.16 Total: 29.65 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 3.08 Total: -49.67 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -2.43 Total: -88.29 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.85 Total: 46.26 kcal Total: -64.71 2.66 -62.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137750432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.240 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds