Wall clock time and date at job start Mon Mar 30 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86802 * 119.99824 * 2 1 4 4 H 1.48500 * 109.46925 * 240.28352 * 3 2 1 5 5 H 1.48507 * 109.47085 * 0.27812 * 3 2 1 6 6 H 1.48495 * 109.46878 * 120.27667 * 3 2 1 7 7 C 1.38722 * 119.99771 * 180.27964 * 2 1 3 8 8 H 1.08006 * 119.99969 * 179.72005 * 7 2 1 9 9 O 1.34797 * 120.00677 * 359.72223 * 7 2 1 10 10 C 1.35532 * 117.00385 * 174.94560 * 9 7 2 11 11 C 1.39164 * 119.86874 * 185.28275 * 10 9 7 12 12 C 1.37704 * 120.12797 * 179.76174 * 11 10 9 13 13 Cl 1.73600 * 120.06611 * 180.27543 * 12 11 10 14 14 C 1.40252 * 119.86533 * 0.51081 * 12 11 10 15 15 C 1.46670 * 120.12638 * 179.71944 * 14 12 11 16 16 O 1.21319 * 119.99718 * 0.02562 * 15 14 12 17 17 C 1.40244 * 119.74672 * 359.74212 * 14 12 11 18 18 Cl 1.73600 * 120.06695 * 179.97438 * 17 14 12 19 19 C 1.37698 * 119.86898 * 0.02562 * 17 14 12 20 20 H 0.97002 * 120.00183 * 359.71687 * 1 2 3 21 21 H 1.07998 * 119.93871 * 0.02562 * 11 10 9 22 22 H 1.07994 * 120.00139 * 180.02562 * 15 14 12 23 23 H 1.08004 * 119.93478 * 179.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.0975 1.6994 -1.2160 5 1 1.2839 2.7465 0.0068 6 1 3.1078 1.6935 1.2091 7 6 2.0086 -1.2014 -0.0059 8 1 3.0886 -1.2014 -0.0104 9 8 1.3347 -2.3688 -0.0059 10 6 2.0684 -3.5029 -0.1182 11 6 1.4289 -4.7333 -0.2355 12 6 2.1690 -5.8883 -0.3548 13 17 1.3695 -7.4216 -0.5083 14 6 3.5700 -5.8240 -0.3471 15 6 4.3640 -7.0513 -0.4676 16 8 3.8089 -8.1247 -0.5747 17 6 4.2089 -4.5817 -0.2232 18 17 5.9425 -4.4925 -0.2120 19 6 3.4583 -3.4329 -0.1094 20 1 -0.4850 0.8400 0.0042 21 1 0.3500 -4.7820 -0.2373 22 1 5.4427 -6.9995 -0.4610 23 1 3.9492 -2.4756 -0.0136 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140429774.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:01 Heat of formation + Delta-G solvation = -60.750292 kcal Electronic energy + Delta-G solvation = -14444.130936 eV Core-core repulsion = 11502.930304 eV Total energy + Delta-G solvation = -2941.200632 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 259.979 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.28709 -39.98021 -38.41261 -37.80757 -36.97400 -34.49116 -31.92401 -31.34370 -27.76557 -25.23736 -23.99318 -22.24252 -20.27273 -19.21275 -18.06276 -17.08113 -16.62872 -16.10580 -16.08803 -15.75325 -15.39318 -15.26082 -14.79007 -13.92347 -13.91607 -13.65425 -13.37132 -13.06258 -12.76975 -12.61727 -12.17467 -11.91778 -11.76750 -11.59218 -10.88038 -10.40456 -9.86112 -9.40898 -8.62787 -6.30303 -0.44047 0.02696 0.65626 1.16826 1.37833 1.39092 1.54335 1.55318 2.11109 2.49228 2.94443 3.12986 3.34416 3.80888 4.01052 4.22299 4.38819 4.50819 4.76176 4.98151 5.02814 5.23762 5.46596 5.80902 6.49930 6.79313 7.43918 8.56776 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.025592 B = 0.006522 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.837322 B = 4292.337635 C = 5372.054908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.421 4.421 8 H 0.117 0.883 9 O -0.189 6.189 10 C 0.176 3.824 11 C -0.202 4.202 12 C 0.070 3.930 13 Cl -0.033 7.033 14 C -0.280 4.280 15 C 0.389 3.611 16 O -0.482 6.482 17 C 0.085 3.915 18 Cl -0.033 7.033 19 C -0.238 4.238 20 H 0.280 0.720 21 H 0.138 0.862 22 H 0.136 0.864 23 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.712 -5.449 -0.432 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.210 4.210 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.135 0.865 9 O -0.091 6.091 10 C 0.119 3.881 11 C -0.223 4.223 12 C 0.043 3.957 13 Cl -0.003 7.003 14 C -0.283 4.283 15 C 0.251 3.749 16 O -0.357 6.357 17 C 0.057 3.943 18 Cl -0.003 7.003 19 C -0.258 4.258 20 H 0.090 0.910 21 H 0.156 0.844 22 H 0.152 0.848 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.048 -5.941 -0.479 10.835 hybrid contribution -0.098 0.827 0.046 0.834 sum 8.949 -5.114 -0.434 10.317 Atomic orbital electron populations 1.70125 1.08214 1.29896 1.45077 1.26693 0.96782 1.02921 0.94608 0.84627 0.77550 0.73694 0.80398 1.17757 1.19730 1.17682 1.22048 0.93198 0.80405 1.53882 0.86536 1.83918 1.36105 1.12696 1.76346 1.19455 0.90358 0.87462 0.90802 1.20112 1.00905 0.88738 1.12499 1.20536 0.91425 0.86974 0.96808 1.98373 1.79123 1.27486 1.95357 1.20136 0.92420 0.96107 1.19683 1.23999 0.95685 0.85202 0.70053 1.90564 1.76645 1.31841 1.36682 1.20534 0.85298 0.92357 0.96130 1.98356 1.07207 1.98423 1.96341 1.21082 0.92674 0.99442 1.12567 0.91033 0.84447 0.84790 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.54 13.67 21.62 0.30 -49.24 14 2 C -0.01 -0.42 5.49 84.86 0.47 0.05 14 3 Si 1.02 37.47 29.55 68.60 2.03 39.49 14 4 H -0.25 -8.73 7.11 99.48 0.71 -8.03 14 5 H -0.27 -9.80 7.11 99.48 0.71 -9.10 14 6 H -0.25 -8.68 7.11 99.48 0.71 -7.97 14 7 C -0.42 -21.29 9.48 67.94 0.64 -20.64 14 8 H 0.12 5.22 5.18 -2.91 -0.02 5.21 14 9 O -0.19 -9.91 9.74 -20.02 -0.20 -10.11 14 10 C 0.18 7.67 6.66 22.72 0.15 7.83 14 11 C -0.20 -8.05 9.75 22.37 0.22 -7.83 14 12 C 0.07 2.53 6.35 22.63 0.14 2.68 14 13 Cl -0.03 -1.10 26.02 -2.72 -0.07 -1.17 14 14 C -0.28 -9.14 5.88 -20.10 -0.12 -9.25 14 15 C 0.39 11.04 11.04 70.02 0.77 11.81 14 16 O -0.48 -16.07 14.78 -3.15 -0.05 -16.11 14 17 C 0.08 2.69 6.35 22.63 0.14 2.84 14 18 Cl -0.03 -0.80 27.42 -2.72 -0.07 -0.87 14 19 C -0.24 -8.93 8.92 22.37 0.20 -8.73 14 20 H 0.28 14.16 8.31 -92.71 -0.77 13.39 14 21 H 0.14 5.37 8.06 -2.91 -0.02 5.35 14 22 H 0.14 2.81 6.97 -2.91 -0.02 2.79 14 23 H 0.15 5.56 5.61 -2.91 -0.02 5.54 14 Total: -1.00 -57.93 246.56 5.83 -52.09 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.28 Total: 7.18 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 2.62 Total: -21.26 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.30 Total: -49.24 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.24 Total: -26.22 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.15 Total: -2.04 kcal Total: -57.93 5.83 -52.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140429774.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.655 kcal (2) G-P(sol) polarization free energy of solvation -57.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds