Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75883 * 125.19026 * 2 1 4 4 C 1.75878 * 90.97657 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 125.20862 * 180.02562 * 4 3 2 6 6 C 1.33472 * 109.58926 * 359.73317 * 4 3 2 7 7 C 1.33357 * 125.19727 * 180.02562 * 2 1 3 8 8 C 1.50707 * 122.53034 * 359.97438 * 7 2 1 9 9 C 1.50695 * 109.47014 * 84.99975 * 8 7 2 10 10 H 1.08004 * 120.00546 * 0.27454 * 9 8 7 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47228 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 120.00131 * 13 11 9 16 16 H 1.48500 * 109.47000 * 240.00224 * 13 11 9 17 17 H 1.09000 * 109.46870 * 269.97229 * 1 2 3 18 18 H 1.09001 * 109.47253 * 29.97091 * 1 2 3 19 19 H 1.08997 * 109.47423 * 149.97268 * 1 2 3 20 20 H 1.07996 * 122.56407 * 180.24612 * 6 4 3 21 21 H 1.08992 * 109.47349 * 324.99834 * 8 7 2 22 22 H 1.08997 * 109.46649 * 204.99518 * 8 7 2 23 23 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5206 1.4374 0.0000 4 6 3.9750 0.4485 -0.0008 5 35 5.7454 1.1131 -0.0006 6 6 3.6380 -0.8430 0.0049 7 6 2.2757 -1.0898 -0.0005 8 6 1.7045 -2.4844 -0.0005 9 6 1.3990 -2.9020 -1.4159 10 1 1.6026 -2.2270 -2.2341 11 6 0.8653 -4.1483 -1.6669 12 7 0.6224 -4.9724 -0.6712 13 14 0.4859 -4.6658 -3.4213 14 1 0.8475 -3.5658 -4.3510 15 1 1.2725 -5.8788 -3.7606 16 1 -0.9633 -4.9643 -3.5469 17 1 -0.3633 -0.0005 1.0277 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3634 -0.8897 -0.5142 20 1 4.3720 -1.6352 0.0094 21 1 0.7881 -2.5017 0.5892 22 1 2.4289 -3.1736 0.4333 23 1 0.2465 -5.8490 -0.8478 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147810387.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = 14.420566 kcal Electronic energy + Delta-G solvation = -10090.971796 eV Core-core repulsion = 8076.479932 eV Total energy + Delta-G solvation = -2014.491864 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.91634 -33.16715 -32.12813 -30.10842 -28.72136 -25.11156 -23.24514 -21.39198 -17.66679 -16.68990 -16.35946 -14.85057 -14.24291 -13.58216 -13.03046 -12.37710 -12.29531 -12.15988 -11.94686 -11.26948 -11.10501 -10.96810 -10.59112 -10.45425 -10.30916 -10.00819 -9.56716 -9.40334 -8.46867 -8.02738 -7.64319 -6.08571 -4.12374 1.32060 1.46430 2.21384 2.41909 3.26634 3.30127 3.35835 3.42390 4.41399 5.26163 5.50954 5.78745 5.96307 6.06917 6.13720 6.53848 6.65606 6.86922 7.05926 7.49714 7.70208 7.87612 8.26814 8.93026 9.51864 11.01070 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.006468 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.604357 B = 4328.164499 C = 4785.810306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.165 4.165 3 S 0.084 5.916 4 C -0.216 4.216 5 Br -0.017 7.017 6 C -0.063 4.063 7 C -0.070 4.070 8 C 0.071 3.929 9 C -0.510 4.510 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 H 0.067 0.933 18 H 0.057 0.943 19 H 0.097 0.903 20 H 0.143 0.857 21 H 0.033 0.967 22 H 0.029 0.971 23 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 12.129 2.371 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.283 4.283 3 S 0.347 5.653 4 C -0.412 4.412 5 Br 0.067 6.933 6 C -0.097 4.097 7 C -0.081 4.081 8 C 0.032 3.968 9 C -0.549 4.549 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 H 0.085 0.915 18 H 0.076 0.924 19 H 0.115 0.885 20 H 0.161 0.839 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.673 13.798 2.411 15.516 hybrid contribution -0.161 -2.012 -0.983 2.245 sum 6.512 11.786 1.428 13.541 Atomic orbital electron populations 1.20339 0.87774 1.03551 1.02118 1.24324 0.99886 0.93734 1.10313 1.83814 0.94873 1.10367 1.76268 1.25675 0.94291 0.99045 1.22144 1.96561 1.11757 1.86820 1.98190 1.20278 0.97221 0.94310 0.97928 1.19538 0.91188 0.99079 0.98336 1.18092 0.96220 0.84656 0.97856 1.21078 1.41837 1.00058 0.91910 0.92428 1.24998 0.95611 0.96466 0.97154 1.69961 1.44179 1.08280 1.30771 0.86510 0.77996 0.78630 0.84789 1.19662 1.20943 1.20913 0.91485 0.92426 0.88453 0.83924 0.94851 0.95294 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.78 36.01 0.35 -0.98 14 2 C -0.17 -3.13 6.50 -36.01 -0.23 -3.37 14 3 S 0.08 1.39 23.33 -107.50 -2.51 -1.11 14 4 C -0.22 -3.78 6.97 29.07 0.20 -3.57 14 5 Br -0.02 -0.24 34.07 -68.01 -2.32 -2.56 14 6 C -0.06 -1.22 9.89 -41.17 -0.41 -1.62 14 7 C -0.07 -1.49 4.99 -106.24 -0.53 -2.02 14 8 C 0.07 1.76 4.61 -29.03 -0.13 1.62 14 9 C -0.51 -13.78 8.84 -34.44 -0.30 -14.08 14 10 H 0.06 1.57 7.74 -52.48 -0.41 1.16 14 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 14 12 N -0.89 -25.64 13.29 55.43 0.74 -24.90 14 13 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 14 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 14 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 17 H 0.07 1.02 8.14 -51.93 -0.42 0.60 14 18 H 0.06 0.83 8.14 -51.93 -0.42 0.41 14 19 H 0.10 1.86 7.18 -51.93 -0.37 1.49 14 20 H 0.14 2.66 8.06 -52.49 -0.42 2.23 14 21 H 0.03 0.86 7.51 -51.93 -0.39 0.47 14 22 H 0.03 0.76 8.11 -51.93 -0.42 0.33 14 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 14 LS Contribution 241.77 15.07 3.64 3.64 Total: -1.00 -27.72 241.77 -8.61 -36.33 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -1.99 Total: -4.96 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -1.15 Total: -22.49 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.74 Total: -24.90 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.51 Total: -1.11 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.32 Total: -2.56 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.72 -8.61 -36.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147810387.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.748 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds