Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75883 * 125.19026 * 2 1 4 4 C 1.75878 * 90.97657 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 125.20862 * 180.02562 * 4 3 2 6 6 C 1.33472 * 109.58926 * 359.73317 * 4 3 2 7 7 C 1.33357 * 125.19727 * 180.02562 * 2 1 3 8 8 C 1.50707 * 122.53034 * 359.97438 * 7 2 1 9 9 C 1.50695 * 109.47014 * 84.99975 * 8 7 2 10 10 H 1.08004 * 120.00546 * 0.27454 * 9 8 7 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47228 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 120.00131 * 13 11 9 16 16 H 1.48500 * 109.47000 * 240.00224 * 13 11 9 17 17 H 1.09000 * 109.46870 * 269.97229 * 1 2 3 18 18 H 1.09001 * 109.47253 * 29.97091 * 1 2 3 19 19 H 1.08997 * 109.47423 * 149.97268 * 1 2 3 20 20 H 1.07996 * 122.56407 * 180.24612 * 6 4 3 21 21 H 1.08992 * 109.47349 * 324.99834 * 8 7 2 22 22 H 1.08997 * 109.46649 * 204.99518 * 8 7 2 23 23 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5206 1.4374 0.0000 4 6 3.9750 0.4485 -0.0008 5 35 5.7454 1.1131 -0.0006 6 6 3.6380 -0.8430 0.0049 7 6 2.2757 -1.0898 -0.0005 8 6 1.7045 -2.4844 -0.0005 9 6 1.3990 -2.9020 -1.4159 10 1 1.6026 -2.2270 -2.2341 11 6 0.8653 -4.1483 -1.6669 12 7 0.6224 -4.9724 -0.6712 13 14 0.4859 -4.6658 -3.4213 14 1 0.8475 -3.5658 -4.3510 15 1 1.2725 -5.8788 -3.7606 16 1 -0.9633 -4.9643 -3.5469 17 1 -0.3633 -0.0005 1.0277 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3634 -0.8897 -0.5142 20 1 4.3720 -1.6352 0.0094 21 1 0.7881 -2.5017 0.5892 22 1 2.4289 -3.1736 0.4333 23 1 0.2465 -5.8490 -0.8478 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147810387.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = 0.110621 kcal Electronic energy + Delta-G solvation = -10091.592321 eV Core-core repulsion = 8076.479932 eV Total energy + Delta-G solvation = -2015.112390 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.45572 -35.11871 -33.65724 -31.45526 -30.60503 -26.79255 -25.00798 -22.97296 -19.24640 -18.46943 -18.09873 -16.65081 -15.90106 -15.11357 -14.51739 -14.24712 -13.78950 -13.68036 -13.50497 -13.09633 -12.72792 -12.60028 -12.39985 -12.20921 -11.78659 -11.37312 -11.30489 -11.23580 -10.58417 -9.40511 -9.14987 -8.17681 -6.29775 -0.13588 0.10221 0.82931 0.95780 1.40067 1.41485 1.53685 1.77413 2.43363 3.13497 4.06991 4.35891 4.45748 4.68831 4.79057 4.98737 5.11540 5.29864 5.31667 5.51225 5.76540 5.87840 6.20237 6.82087 7.38386 8.91287 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.006468 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.604357 B = 4328.164499 C = 4785.810306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.174 4.174 3 S 0.156 5.844 4 C -0.222 4.222 5 Br 0.015 6.985 6 C -0.084 4.084 7 C -0.101 4.101 8 C 0.082 3.918 9 C -0.520 4.520 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.959 3.041 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.276 1.276 17 H 0.083 0.917 18 H 0.086 0.914 19 H 0.068 0.932 20 H 0.139 0.861 21 H 0.014 0.986 22 H 0.001 0.999 23 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 13.930 1.587 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.292 4.292 3 S 0.419 5.581 4 C -0.417 4.417 5 Br 0.098 6.902 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.043 3.957 9 C -0.558 4.558 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.784 3.216 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.201 1.201 17 H 0.102 0.898 18 H 0.104 0.896 19 H 0.087 0.913 20 H 0.157 0.843 21 H 0.032 0.968 22 H 0.020 0.980 23 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.883 15.612 1.627 17.139 hybrid contribution -0.168 -2.458 -0.692 2.559 sum 6.715 13.154 0.936 14.799 Atomic orbital electron populations 1.20378 0.86641 1.03537 1.03215 1.24659 1.01171 0.94876 1.08454 1.83516 0.92676 1.07374 1.74493 1.25945 0.96547 0.98838 1.20380 1.96589 1.09457 1.86106 1.98051 1.20157 0.96451 0.95326 0.99855 1.19260 0.92499 0.97797 1.01696 1.17767 0.94726 0.86845 0.96390 1.21328 1.41515 1.00151 0.92792 0.92986 1.25825 0.95456 0.96528 1.01193 1.70072 1.45109 1.08735 1.32905 0.85483 0.78030 0.78211 0.79875 1.19108 1.20542 1.20103 0.89811 0.89558 0.91299 0.84307 0.96751 0.98020 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.58 9.78 71.24 0.70 -1.88 14 2 C -0.17 -6.41 6.50 24.58 0.16 -6.25 14 3 S 0.16 4.74 23.33 -56.49 -1.32 3.43 14 4 C -0.22 -7.35 6.97 66.74 0.46 -6.89 14 5 Br 0.01 0.39 34.07 -20.37 -0.69 -0.30 14 6 C -0.08 -3.23 9.89 21.24 0.21 -3.02 14 7 C -0.10 -4.35 4.99 -20.91 -0.10 -4.45 14 8 C 0.08 4.23 4.61 29.10 0.13 4.37 14 9 C -0.52 -28.72 8.84 25.60 0.23 -28.50 14 10 H 0.05 2.87 7.74 -2.91 -0.02 2.85 14 11 C 0.01 0.46 5.46 84.66 0.46 0.92 14 12 N -0.93 -54.54 13.29 21.45 0.28 -54.26 14 13 Si 0.96 43.50 29.54 68.60 2.03 45.53 14 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 14 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 14 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 14 17 H 0.08 2.43 8.14 -2.39 -0.02 2.41 14 18 H 0.09 2.28 8.14 -2.39 -0.02 2.26 14 19 H 0.07 2.66 7.18 -2.39 -0.02 2.64 14 20 H 0.14 5.30 8.06 -2.91 -0.02 5.28 14 21 H 0.01 0.77 7.51 -2.39 -0.02 0.75 14 22 H 0.00 0.08 8.11 -2.39 -0.02 0.06 14 23 H 0.26 14.61 8.31 -92.71 -0.77 13.84 14 Total: -1.00 -59.16 241.77 3.76 -55.40 By element: Atomic # 1 Polarization: -5.30 SS G_CDS: 1.21 Total: -4.09 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 2.25 Total: -45.70 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.26 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.32 Total: 3.43 kcal Atomic # 35 Polarization: 0.39 SS G_CDS: -0.69 Total: -0.30 kcal Total: -59.16 3.76 -55.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147810387.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.508 kcal (2) G-P(sol) polarization free energy of solvation -59.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds