Wall clock time and date at job start Mon Mar 30 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.28797 * 2 1 4 4 C 1.54263 * 110.32066 * 237.87760 * 2 1 3 5 5 C 1.54387 * 105.05984 * 241.00096 * 4 2 1 6 6 H 1.09001 * 110.40878 * 94.92937 * 5 4 2 7 7 C 1.52996 * 110.51045 * 217.31924 * 5 4 2 8 8 N 1.48558 * 104.59373 * 336.15020 * 5 4 2 9 9 C 1.46898 * 110.99857 * 159.03985 * 8 5 4 10 10 H 1.08996 * 109.47079 * 299.99644 * 9 8 5 11 11 C 1.50704 * 109.47283 * 60.00094 * 9 8 5 12 12 H 1.07993 * 119.99543 * 241.76832 * 11 9 8 13 13 C 1.37876 * 119.99856 * 62.04313 * 11 9 8 14 14 N 1.31516 * 120.00160 * 347.59463 * 13 11 9 15 15 Si 1.86799 * 119.99691 * 167.59691 * 13 11 9 16 16 H 1.48501 * 109.47481 * 59.99941 * 15 13 11 17 17 H 1.48501 * 109.46846 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46910 * 299.99524 * 15 13 11 19 19 C 1.50707 * 109.46912 * 179.97438 * 9 8 5 20 20 C 1.38238 * 119.99662 * 148.98646 * 19 9 8 21 21 C 1.38232 * 119.99846 * 179.76488 * 20 19 9 22 22 C 1.38236 * 119.99883 * 0.51247 * 21 20 19 23 23 C 1.38238 * 119.99974 * 359.74618 * 22 21 20 24 24 C 1.38228 * 119.99973 * 359.97438 * 23 22 21 25 25 C 1.48558 * 104.22203 * 39.47864 * 8 5 4 26 26 H 1.09007 * 109.47048 * 182.12381 * 1 2 3 27 27 H 1.08995 * 109.46756 * 302.12078 * 1 2 3 28 28 H 1.08997 * 109.47140 * 62.12614 * 1 2 3 29 29 H 1.09002 * 110.32586 * 122.10782 * 4 2 1 30 30 H 1.08998 * 110.32812 * 359.89486 * 4 2 1 31 31 H 1.09005 * 109.46943 * 175.22761 * 7 5 4 32 32 H 1.08995 * 109.47576 * 295.23177 * 7 5 4 33 33 H 1.09000 * 109.47454 * 55.23250 * 7 5 4 34 34 H 0.96999 * 119.99936 * 180.02562 * 14 13 11 35 35 H 1.07998 * 120.00066 * 0.02562 * 20 19 9 36 36 H 1.07996 * 120.00509 * 180.23192 * 21 20 19 37 37 H 1.08002 * 120.00216 * 179.71847 * 22 21 20 38 38 H 1.08002 * 119.99929 * 179.97438 * 23 22 21 39 39 H 1.08006 * 120.00045 * 179.97438 * 24 23 22 40 40 H 1.09006 * 110.40532 * 79.29745 * 25 8 5 41 41 H 1.08997 * 110.41219 * 201.73545 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0657 -0.7692 -1.2252 5 6 2.8828 -1.9401 -0.6378 6 1 2.2683 -2.8381 -0.5739 7 6 4.1266 -2.2056 -1.4883 8 7 3.2721 -1.4808 0.7203 9 6 3.6119 -2.6195 1.5838 10 1 2.7486 -3.2789 1.6720 11 6 4.7654 -3.3799 0.9818 12 1 4.6376 -4.4111 0.6879 13 6 5.9854 -2.7605 0.8115 14 7 6.0841 -1.4555 0.9408 15 14 7.4981 -3.7751 0.3971 16 1 7.2777 -4.4918 -0.8847 17 1 8.6748 -2.8787 0.2664 18 1 7.7444 -4.7613 1.4797 19 6 4.0013 -2.1155 2.9497 20 6 3.7497 -2.8871 4.0687 21 6 4.1113 -2.4270 5.3211 22 6 4.7149 -1.1907 5.4554 23 6 4.9617 -0.4167 4.3369 24 6 4.6053 -0.8794 3.0840 25 6 2.0684 -0.7708 1.2244 26 1 -0.3633 -1.0270 0.0381 27 1 -0.3633 0.5464 0.8703 28 1 -0.3633 0.4804 -0.9084 29 1 2.7067 -0.1244 -1.8265 30 1 1.2388 -1.1484 -1.8255 31 1 4.7337 -2.9763 -1.0134 32 1 3.8238 -2.5413 -2.4801 33 1 4.7086 -1.2882 -1.5772 34 1 6.9424 -1.0197 0.8207 35 1 3.2744 -3.8512 3.9641 36 1 3.9181 -3.0313 6.1950 37 1 4.9933 -0.8291 6.4343 38 1 5.4329 0.5494 4.4419 39 1 4.7978 -0.2746 2.2101 40 1 1.3264 -1.4859 1.5798 41 1 2.3413 -0.0776 2.0200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164322577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:38 Heat of formation + Delta-G solvation = 36.354257 kcal Electronic energy + Delta-G solvation = -20603.333589 eV Core-core repulsion = 17869.118451 eV Total energy + Delta-G solvation = -2734.215138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.91166 -37.53608 -34.08792 -31.60360 -31.23300 -29.82591 -28.92785 -27.11348 -25.41835 -24.15209 -22.41948 -21.39330 -20.08528 -19.37926 -18.96306 -16.25805 -15.77930 -14.98098 -14.69488 -14.59480 -13.90511 -13.68516 -13.25662 -12.79740 -12.66583 -12.26815 -12.18953 -12.07601 -11.72781 -11.62380 -11.45643 -11.02754 -10.91959 -10.77691 -10.51851 -10.42540 -10.27530 -10.10912 -9.86902 -9.81102 -9.59182 -9.53647 -9.06221 -8.28508 -7.77405 -7.38299 -6.94819 -5.92743 -4.04690 2.50438 2.62154 3.29533 3.35241 3.39576 4.39543 4.95970 5.09689 5.27159 5.36169 5.42272 5.64738 5.82848 5.87266 5.96659 6.01819 6.05857 6.08879 6.14964 6.29812 6.39455 6.43130 6.54476 6.56889 6.65575 6.72097 6.81553 6.83030 6.89898 6.92502 7.04200 7.14512 7.28653 7.37155 7.50373 7.66457 7.76625 7.85612 7.98650 8.12446 8.30261 8.50303 8.55150 8.97975 9.53402 11.00103 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.011299 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.826194 B = 2477.522175 C = 3864.316846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.069 0.931 4 C -0.117 4.117 5 C 0.090 3.910 6 H 0.025 0.975 7 C -0.139 4.139 8 N -0.457 5.457 9 C 0.237 3.763 10 H -0.002 1.002 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.092 3.908 14 N -0.821 5.821 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.029 4.029 20 C -0.134 4.134 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.056 4.056 25 C 0.029 3.971 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.014 0.986 33 H 0.050 0.950 34 H 0.258 0.742 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.159 0.841 40 H 0.022 0.978 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 2.502 0.386 6.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.019 4.019 6 H 0.043 0.957 7 C -0.196 4.196 8 N -0.182 5.182 9 C 0.131 3.869 10 H 0.016 0.984 11 C -0.562 4.562 12 H 0.076 0.924 13 C -0.117 4.117 14 N -0.453 5.453 15 Si 0.699 3.301 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.030 4.030 20 C -0.153 4.153 21 C -0.164 4.164 22 C -0.169 4.169 23 C -0.170 4.170 24 C -0.075 4.075 25 C -0.099 4.099 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.176 0.824 40 H 0.040 0.960 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.472 3.014 0.359 6.257 hybrid contribution 0.337 -1.160 0.037 1.209 sum -5.135 1.854 0.396 5.474 Atomic orbital electron populations 1.21849 0.96015 1.01172 1.00742 1.21835 0.94058 0.99643 0.95979 0.91241 1.22502 0.98484 0.97831 0.96732 1.22103 0.94899 0.93561 0.91348 0.95670 1.22086 0.97930 1.04141 0.95413 1.65696 1.27173 1.24704 1.00599 1.18389 0.94061 0.87185 0.87259 0.98388 1.20621 0.94962 0.97375 1.43223 0.92441 1.24815 0.97917 0.94450 0.94477 1.70051 1.23867 1.07339 1.44005 0.87013 0.83384 0.80745 0.78955 1.20184 1.21214 1.20338 1.20178 0.95289 0.92958 0.94557 1.20880 1.02372 0.99378 0.92648 1.20737 1.02375 0.96647 0.96618 1.20787 1.02786 0.95793 0.97572 1.21160 1.02633 0.99401 0.93774 1.21659 0.92932 0.96291 0.96612 1.23190 0.93044 0.97369 0.96333 0.93128 0.93188 0.93272 0.91892 0.93005 0.87877 0.96711 0.93131 0.93205 0.87968 0.88186 0.88393 0.88144 0.82391 0.95986 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.92 37.16 0.33 -1.59 16 2 C -0.10 -1.59 3.65 -89.24 -0.33 -1.92 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.12 -2.03 6.20 -25.34 -0.16 -2.19 16 5 C 0.09 1.84 2.71 -66.07 -0.18 1.66 16 6 H 0.03 0.54 7.97 -51.93 -0.41 0.12 16 7 C -0.14 -2.96 8.53 37.16 0.32 -2.64 16 8 N -0.46 -10.01 3.12 -217.00 -0.68 -10.68 16 9 C 0.24 5.61 1.71 -70.01 -0.12 5.49 16 10 H 0.00 -0.04 7.91 -51.93 -0.41 -0.45 16 11 C -0.52 -13.22 5.91 -34.44 -0.20 -13.42 16 12 H 0.06 1.47 7.84 -52.49 -0.41 1.06 16 13 C 0.09 2.31 3.43 -17.82 -0.06 2.25 16 14 N -0.82 -20.77 9.12 55.43 0.51 -20.27 16 15 Si 0.87 20.15 29.52 -169.99 -5.02 15.13 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.03 -0.66 4.10 -104.62 -0.43 -1.09 16 20 C -0.13 -2.88 9.70 -39.58 -0.38 -3.26 16 21 C -0.15 -2.84 10.05 -39.58 -0.40 -3.24 16 22 C -0.15 -2.91 10.05 -39.58 -0.40 -3.30 16 23 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 24 C -0.06 -1.28 6.61 -39.59 -0.26 -1.54 16 25 C 0.03 0.56 5.25 -2.19 -0.01 0.55 16 26 H 0.05 0.70 8.10 -51.92 -0.42 0.28 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.09 7.83 -51.93 -0.41 0.69 16 30 H 0.05 0.81 7.71 -51.93 -0.40 0.41 16 31 H 0.10 2.45 4.10 -51.93 -0.21 2.23 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 35 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.16 3.87 5.81 -52.48 -0.31 3.57 16 40 H 0.02 0.43 7.60 -51.93 -0.39 0.03 16 41 H 0.07 1.33 7.21 -51.93 -0.37 0.96 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -25.22 313.23 -9.83 -35.06 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.69 Total: 3.80 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -2.68 Total: -27.76 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: -0.17 Total: -30.95 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.22 -9.83 -35.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164322577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.410 kcal (2) G-P(sol) polarization free energy of solvation -25.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds