Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.28797 * 2 1 4 4 C 1.54263 * 110.32066 * 237.87760 * 2 1 3 5 5 C 1.54387 * 105.05984 * 241.00096 * 4 2 1 6 6 H 1.09001 * 110.40878 * 94.92937 * 5 4 2 7 7 C 1.52996 * 110.51045 * 217.31924 * 5 4 2 8 8 N 1.48558 * 104.59373 * 336.15020 * 5 4 2 9 9 C 1.46898 * 110.99857 * 159.03985 * 8 5 4 10 10 H 1.08996 * 109.47079 * 299.99644 * 9 8 5 11 11 C 1.50704 * 109.47283 * 60.00094 * 9 8 5 12 12 H 1.07993 * 119.99543 * 241.76832 * 11 9 8 13 13 C 1.37876 * 119.99856 * 62.04313 * 11 9 8 14 14 N 1.31516 * 120.00160 * 347.59463 * 13 11 9 15 15 Si 1.86799 * 119.99691 * 167.59691 * 13 11 9 16 16 H 1.48501 * 109.47481 * 59.99941 * 15 13 11 17 17 H 1.48501 * 109.46846 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46910 * 299.99524 * 15 13 11 19 19 C 1.50707 * 109.46912 * 179.97438 * 9 8 5 20 20 C 1.38238 * 119.99662 * 148.98646 * 19 9 8 21 21 C 1.38232 * 119.99846 * 179.76488 * 20 19 9 22 22 C 1.38236 * 119.99883 * 0.51247 * 21 20 19 23 23 C 1.38238 * 119.99974 * 359.74618 * 22 21 20 24 24 C 1.38228 * 119.99973 * 359.97438 * 23 22 21 25 25 C 1.48558 * 104.22203 * 39.47864 * 8 5 4 26 26 H 1.09007 * 109.47048 * 182.12381 * 1 2 3 27 27 H 1.08995 * 109.46756 * 302.12078 * 1 2 3 28 28 H 1.08997 * 109.47140 * 62.12614 * 1 2 3 29 29 H 1.09002 * 110.32586 * 122.10782 * 4 2 1 30 30 H 1.08998 * 110.32812 * 359.89486 * 4 2 1 31 31 H 1.09005 * 109.46943 * 175.22761 * 7 5 4 32 32 H 1.08995 * 109.47576 * 295.23177 * 7 5 4 33 33 H 1.09000 * 109.47454 * 55.23250 * 7 5 4 34 34 H 0.96999 * 119.99936 * 180.02562 * 14 13 11 35 35 H 1.07998 * 120.00066 * 0.02562 * 20 19 9 36 36 H 1.07996 * 120.00509 * 180.23192 * 21 20 19 37 37 H 1.08002 * 120.00216 * 179.71847 * 22 21 20 38 38 H 1.08002 * 119.99929 * 179.97438 * 23 22 21 39 39 H 1.08006 * 120.00045 * 179.97438 * 24 23 22 40 40 H 1.09006 * 110.40532 * 79.29745 * 25 8 5 41 41 H 1.08997 * 110.41219 * 201.73545 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0657 -0.7692 -1.2252 5 6 2.8828 -1.9401 -0.6378 6 1 2.2683 -2.8381 -0.5739 7 6 4.1266 -2.2056 -1.4883 8 7 3.2721 -1.4808 0.7203 9 6 3.6119 -2.6195 1.5838 10 1 2.7486 -3.2789 1.6720 11 6 4.7654 -3.3799 0.9818 12 1 4.6376 -4.4111 0.6879 13 6 5.9854 -2.7605 0.8115 14 7 6.0841 -1.4555 0.9408 15 14 7.4981 -3.7751 0.3971 16 1 7.2777 -4.4918 -0.8847 17 1 8.6748 -2.8787 0.2664 18 1 7.7444 -4.7613 1.4797 19 6 4.0013 -2.1155 2.9497 20 6 3.7497 -2.8871 4.0687 21 6 4.1113 -2.4270 5.3211 22 6 4.7149 -1.1907 5.4554 23 6 4.9617 -0.4167 4.3369 24 6 4.6053 -0.8794 3.0840 25 6 2.0684 -0.7708 1.2244 26 1 -0.3633 -1.0270 0.0381 27 1 -0.3633 0.5464 0.8703 28 1 -0.3633 0.4804 -0.9084 29 1 2.7067 -0.1244 -1.8265 30 1 1.2388 -1.1484 -1.8255 31 1 4.7337 -2.9763 -1.0134 32 1 3.8238 -2.5413 -2.4801 33 1 4.7086 -1.2882 -1.5772 34 1 6.9424 -1.0197 0.8207 35 1 3.2744 -3.8512 3.9641 36 1 3.9181 -3.0313 6.1950 37 1 4.9933 -0.8291 6.4343 38 1 5.4329 0.5494 4.4419 39 1 4.7978 -0.2746 2.2101 40 1 1.3264 -1.4859 1.5798 41 1 2.3413 -0.0776 2.0200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164322577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = 25.775081 kcal Electronic energy + Delta-G solvation = -20603.792336 eV Core-core repulsion = 17869.118451 eV Total energy + Delta-G solvation = -2734.673885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54081 -39.10548 -35.76365 -33.34963 -32.81409 -31.44898 -30.55178 -28.78631 -26.93548 -25.77441 -24.12822 -23.02255 -21.70240 -20.98845 -20.49620 -18.10847 -17.38923 -16.74502 -16.24255 -16.20958 -15.56815 -15.32892 -14.86275 -14.46631 -14.12611 -13.78524 -13.74687 -13.57517 -13.26982 -13.20950 -13.11612 -12.70390 -12.61622 -12.55973 -12.18227 -12.05967 -11.95798 -11.63274 -11.51262 -11.31873 -11.22035 -11.15582 -10.80919 -10.18358 -9.41463 -9.07293 -8.65870 -7.84454 -6.00519 0.85824 1.00372 1.41786 1.46100 1.49390 2.48053 3.22815 3.37324 3.66002 3.92336 4.02711 4.21481 4.37084 4.39200 4.46639 4.55411 4.65964 4.72581 4.74480 4.87161 4.89082 4.94455 4.98444 5.07184 5.10753 5.16041 5.24795 5.27233 5.34674 5.38746 5.49894 5.54974 5.65951 5.66960 5.78173 5.88681 6.00576 6.09204 6.21854 6.39468 6.59037 6.67688 6.81637 7.13107 7.58074 9.05225 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.011299 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.826194 B = 2477.522175 C = 3864.316846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.109 4.109 5 C 0.082 3.918 6 H 0.014 0.986 7 C -0.130 4.130 8 N -0.469 5.469 9 C 0.240 3.760 10 H -0.021 1.021 11 C -0.536 4.536 12 H 0.041 0.959 13 C 0.070 3.930 14 N -0.828 5.828 15 Si 0.911 3.089 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.050 4.050 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.158 4.158 24 C -0.070 4.070 25 C 0.032 3.968 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.017 0.983 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 3.303 1.108 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.026 4.026 6 H 0.032 0.968 7 C -0.187 4.187 8 N -0.193 5.193 9 C 0.133 3.867 10 H -0.003 1.003 11 C -0.574 4.574 12 H 0.059 0.941 13 C -0.137 4.137 14 N -0.460 5.460 15 Si 0.739 3.261 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.051 4.051 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.176 4.176 24 C -0.089 4.089 25 C -0.097 4.097 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.138 0.862 39 H 0.154 0.846 40 H 0.035 0.965 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.128 3.817 1.075 7.299 hybrid contribution 0.524 -1.426 -0.131 1.525 sum -5.603 2.391 0.943 6.165 Atomic orbital electron populations 1.21786 0.93375 1.01503 1.02376 1.21816 0.96207 0.99001 0.93908 0.90965 1.22440 0.98682 0.96476 0.97104 1.22182 0.94829 0.94573 0.91047 0.96828 1.21923 0.97848 1.02392 0.96531 1.65576 1.28706 1.24018 1.00984 1.18283 0.92754 0.87457 0.88207 1.00345 1.20654 0.96068 0.96828 1.43863 0.94060 1.25113 0.99072 0.95005 0.94547 1.70168 1.23654 1.07749 1.44466 0.86395 0.81579 0.79660 0.78506 1.19896 1.21094 1.21153 1.20200 0.96506 0.93714 0.94647 1.21092 1.03039 0.99617 0.93338 1.21117 1.01025 0.97063 0.96779 1.21186 1.01300 0.95209 0.98696 1.21420 1.02320 1.00478 0.93387 1.21454 0.94231 0.96178 0.96994 1.23165 0.92052 0.97038 0.97422 0.93389 0.92182 0.91099 0.91875 0.90705 0.90445 0.94495 0.94672 0.93656 0.87661 0.84892 0.84753 0.86232 0.84637 0.96508 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.92 71.98 0.64 -2.65 16 2 C -0.09 -2.86 3.65 -9.90 -0.04 -2.90 16 3 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.11 -3.63 6.20 31.49 0.20 -3.43 16 5 C 0.08 3.41 2.71 45.06 0.12 3.53 16 6 H 0.01 0.59 7.97 -2.39 -0.02 0.57 16 7 C -0.13 -5.60 8.53 71.98 0.61 -4.98 16 8 N -0.47 -20.96 3.12 -840.45 -2.62 -23.59 16 9 C 0.24 11.71 1.71 43.43 0.07 11.79 16 10 H -0.02 -1.07 7.91 -2.39 -0.02 -1.08 16 11 C -0.54 -27.96 5.91 25.60 0.15 -27.81 16 12 H 0.04 2.21 7.84 -2.91 -0.02 2.19 16 13 C 0.07 3.59 3.43 84.65 0.29 3.88 16 14 N -0.83 -42.76 9.12 21.45 0.20 -42.56 16 15 Si 0.91 41.91 29.52 68.60 2.02 43.94 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 19 C -0.05 -2.33 4.10 -19.86 -0.08 -2.41 16 20 C -0.15 -6.49 9.70 22.27 0.22 -6.27 16 21 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 22 C -0.15 -5.18 10.05 22.27 0.22 -4.96 16 23 C -0.16 -6.26 10.05 22.27 0.22 -6.03 16 24 C -0.07 -3.19 6.61 22.27 0.15 -3.05 16 25 C 0.03 1.23 5.25 86.45 0.45 1.69 16 26 H 0.05 1.22 8.10 -2.38 -0.02 1.20 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.06 2.10 7.83 -2.39 -0.02 2.08 16 30 H 0.07 2.14 7.71 -2.39 -0.02 2.13 16 31 H 0.08 3.76 4.10 -2.38 -0.01 3.75 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.03 1.58 8.09 -2.39 -0.02 1.56 16 34 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 35 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.14 6.80 5.81 -2.91 -0.02 6.78 16 40 H 0.02 0.66 7.60 -2.38 -0.02 0.64 16 41 H 0.06 2.30 7.21 -2.39 -0.02 2.28 16 Total: -1.00 -54.69 313.23 4.04 -50.65 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.98 Total: 20.13 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 3.46 Total: -48.57 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -2.43 Total: -66.15 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.02 Total: 43.94 kcal Total: -54.69 4.04 -50.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164322577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.425 kcal (2) G-P(sol) polarization free energy of solvation -54.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds