Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47013 * 120.00547 * 2 1 3 5 5 H 1.07999 * 120.00349 * 34.19634 * 4 2 1 6 6 C 1.37878 * 119.99524 * 214.19908 * 4 2 1 7 7 N 1.31518 * 120.00210 * 354.17888 * 6 4 2 8 8 Si 1.86807 * 119.99806 * 174.17572 * 6 4 2 9 9 H 1.48503 * 109.47106 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47038 * 119.99996 * 8 6 4 11 11 H 1.48497 * 109.47023 * 239.99863 * 8 6 4 12 12 N 1.46902 * 109.46863 * 240.00119 * 2 1 3 13 13 C 1.46900 * 111.00225 * 306.04875 * 12 2 1 14 14 C 1.46905 * 110.99683 * 70.00295 * 12 2 1 15 15 C 1.53001 * 109.46948 * 162.04771 * 14 12 2 16 16 C 1.50700 * 115.55409 * 147.46348 * 15 14 12 17 17 C 1.38233 * 120.00410 * 149.05887 * 16 15 14 18 18 C 1.38231 * 119.99926 * 179.78775 * 17 16 15 19 19 C 1.38232 * 120.00247 * 0.44746 * 18 17 16 20 20 C 1.38231 * 119.99895 * 359.80583 * 19 18 17 21 21 C 1.38235 * 119.99636 * 329.33539 * 16 15 14 22 22 C 1.53000 * 117.50008 * 1.75414 * 15 14 12 23 23 C 1.52997 * 59.99985 * 252.51285 * 22 15 14 24 24 H 1.08996 * 109.47112 * 296.09972 * 1 2 3 25 25 H 1.09000 * 109.47562 * 56.09490 * 1 2 3 26 26 H 1.08996 * 109.47354 * 176.09776 * 1 2 3 27 27 H 0.96995 * 120.00099 * 4.81877 * 7 6 4 28 28 H 1.08995 * 109.47106 * 62.30433 * 13 12 2 29 29 H 1.08997 * 109.47077 * 182.30440 * 13 12 2 30 30 H 1.09001 * 109.46847 * 302.30024 * 13 12 2 31 31 H 1.08999 * 109.46809 * 282.04376 * 14 12 2 32 32 H 1.08993 * 109.47723 * 42.04507 * 14 12 2 33 33 H 1.08005 * 119.99611 * 0.02562 * 17 16 15 34 34 H 1.08010 * 119.99725 * 180.27450 * 18 17 16 35 35 H 1.08001 * 120.00240 * 179.83627 * 19 18 17 36 36 H 1.08004 * 120.00349 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00242 * 359.97438 * 21 16 15 38 38 H 1.09001 * 117.49648 * 0.02562 * 22 15 14 39 39 H 1.08997 * 117.50420 * 145.02137 * 22 15 14 40 40 H 1.09003 * 117.49815 * 252.50736 * 23 22 15 41 41 H 1.09000 * 117.52121 * 107.48095 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4829 -1.5493 1.6317 6 6 3.1932 -0.2897 1.8437 7 7 3.9227 0.6557 1.2925 8 14 3.7298 -1.0621 3.4577 9 1 2.7432 -2.0950 3.8643 10 1 5.0632 -1.6926 3.2856 11 1 3.8097 -0.0134 4.5060 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7528 0.0974 -2.4091 15 6 2.6397 -0.4032 -3.5509 16 6 2.0407 -0.3049 -4.9302 17 6 2.8583 -0.0999 -6.0259 18 6 2.3092 -0.0141 -7.2915 19 6 0.9417 -0.1242 -7.4606 20 6 0.1236 -0.3240 -6.3645 21 6 0.6731 -0.4141 -5.0992 22 6 3.5589 -1.5918 -3.2625 23 6 4.1488 -0.1889 -3.4192 24 1 -0.3633 0.4521 0.9228 25 1 -0.3634 0.5732 -0.8529 26 1 -0.3634 -1.0252 -0.0699 27 1 3.6096 1.1055 0.4923 28 1 0.3522 -1.9529 -1.4106 29 1 1.8445 -2.5412 -2.1819 30 1 1.6715 -2.6087 -0.4117 31 1 0.7049 -0.0098 -2.6891 32 1 1.9709 1.1471 -2.2130 33 1 3.9264 -0.0105 -5.8934 34 1 2.9485 0.1416 -8.1481 35 1 0.5124 -0.0545 -8.4492 36 1 -0.9449 -0.4104 -6.4965 37 1 0.0339 -0.5703 -4.2428 38 1 3.5314 -2.0175 -2.2594 39 1 3.7304 -2.3031 -4.0704 40 1 4.7085 0.0228 -4.3303 41 1 4.5099 0.3090 -2.5193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186729956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = 60.721712 kcal Electronic energy + Delta-G solvation = -19731.614165 eV Core-core repulsion = 16998.455679 eV Total energy + Delta-G solvation = -2733.158485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80693 -37.76940 -35.72151 -32.43135 -30.97701 -30.37061 -29.12028 -27.20451 -24.74582 -24.11860 -22.70860 -22.27762 -21.54807 -19.84935 -18.64858 -17.16177 -16.47355 -15.29366 -14.92486 -14.79124 -14.29391 -14.02210 -13.77092 -13.71432 -13.37795 -12.81264 -12.66820 -12.55444 -11.99865 -11.80822 -11.43046 -11.19587 -11.14150 -10.84383 -10.76610 -10.72582 -10.47889 -10.25370 -10.10764 -9.88306 -9.73444 -9.52794 -8.85659 -8.51031 -8.33525 -8.29677 -7.04336 -6.31122 -4.02111 1.43440 1.46897 3.46427 3.49266 3.62684 3.78669 4.40949 4.55403 4.75357 4.90174 5.01298 5.11468 5.16236 5.28760 5.47286 5.50604 5.60394 5.63072 5.77676 6.02401 6.07096 6.11510 6.18766 6.21375 6.25155 6.32275 6.42185 6.42810 6.47797 6.50351 6.57504 6.64995 6.71229 6.81325 6.86127 6.89137 7.02329 7.09011 7.26197 7.93316 8.36571 8.52772 8.55531 8.94875 9.73666 11.09444 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034641 B = 0.005133 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.103901 B = 5453.170213 C = 5866.791983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.188 3.812 3 H 0.047 0.953 4 C -0.582 4.582 5 H 0.046 0.954 6 C 0.032 3.968 7 N -0.902 5.902 8 Si 1.070 2.930 9 H -0.291 1.291 10 H -0.288 1.288 11 H -0.289 1.289 12 N -0.522 5.522 13 C 0.030 3.970 14 C 0.087 3.913 15 C -0.097 4.097 16 C -0.027 4.027 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.152 4.152 23 C -0.161 4.161 24 H 0.048 0.952 25 H 0.021 0.979 26 H 0.043 0.957 27 H 0.274 0.726 28 H 0.007 0.993 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -2.098 -14.035 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.083 3.917 3 H 0.065 0.935 4 C -0.621 4.621 5 H 0.065 0.935 6 C -0.175 4.175 7 N -0.537 5.537 8 Si 0.899 3.101 9 H -0.217 1.217 10 H -0.214 1.214 11 H -0.215 1.215 12 N -0.245 5.245 13 C -0.119 4.119 14 C -0.042 4.042 15 C -0.098 4.098 16 C -0.027 4.027 17 C -0.142 4.142 18 C -0.138 4.138 19 C -0.153 4.153 20 C -0.137 4.137 21 C -0.135 4.135 22 C -0.189 4.189 23 C -0.198 4.198 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.244 -2.138 -12.850 13.218 hybrid contribution -2.200 0.111 -1.365 2.592 sum -4.444 -2.027 -14.215 15.031 Atomic orbital electron populations 1.22445 1.01414 0.99780 0.99132 1.19565 0.88326 0.95592 0.88181 0.93545 1.21755 1.12132 1.18439 1.09745 0.93550 1.25738 0.92997 0.96360 1.02420 1.70682 1.37102 1.23716 1.22235 0.83539 0.75728 0.75573 0.75216 1.21692 1.21436 1.21515 1.62887 1.58488 1.01979 1.01172 1.22342 0.95319 0.92744 1.01473 1.21557 0.94898 0.97625 0.90086 1.20268 0.92166 1.05554 0.91769 1.19240 0.93201 0.96875 0.93373 1.21105 1.00075 1.00878 0.92165 1.21078 0.95156 1.00583 0.96937 1.21059 0.93874 1.01913 0.98498 1.21106 0.99551 1.00321 0.92716 1.21086 0.94807 1.00396 0.97226 1.23229 1.01288 0.90568 1.03816 1.23014 0.93532 1.00613 1.02661 0.93316 0.95987 0.93754 0.91419 0.97489 0.92910 0.91134 0.95478 0.91757 0.85936 0.86419 0.86556 0.86399 0.85977 0.85677 0.90431 0.89821 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 8.50 37.16 0.32 -3.29 16 2 C 0.19 4.56 2.14 -68.87 -0.15 4.41 16 3 H 0.05 1.24 6.17 -51.93 -0.32 0.92 16 4 C -0.58 -15.70 7.41 -34.44 -0.26 -15.95 16 5 H 0.05 1.27 7.74 -52.49 -0.41 0.86 16 6 C 0.03 0.88 5.45 -17.82 -0.10 0.79 16 7 N -0.90 -26.51 13.63 55.43 0.76 -25.75 16 8 Si 1.07 24.93 29.91 -169.99 -5.08 19.85 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.52 -11.25 3.70 -236.29 -0.87 -12.13 16 13 C 0.03 0.59 7.68 60.06 0.46 1.05 16 14 C 0.09 1.65 4.40 -3.82 -0.02 1.63 16 15 C -0.10 -1.63 2.38 -155.66 -0.37 -2.00 16 16 C -0.03 -0.40 5.48 -104.62 -0.57 -0.97 16 17 C -0.12 -1.68 9.37 -39.59 -0.37 -2.05 16 18 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 19 C -0.14 -1.55 10.05 -39.59 -0.40 -1.95 16 20 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 21 C -0.12 -1.68 9.25 -39.58 -0.37 -2.05 16 22 C -0.15 -2.56 8.02 -26.73 -0.21 -2.77 16 23 C -0.16 -2.69 9.58 -26.73 -0.26 -2.95 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.02 0.42 7.30 -51.93 -0.38 0.04 16 26 H 0.04 0.92 6.15 -51.93 -0.32 0.60 16 27 H 0.27 8.06 6.58 -40.82 -0.27 7.79 16 28 H 0.01 0.13 6.25 -51.93 -0.32 -0.19 16 29 H 0.05 0.95 5.48 -51.93 -0.28 0.67 16 30 H 0.07 1.52 7.16 -51.93 -0.37 1.15 16 31 H 0.03 0.50 5.20 -51.93 -0.27 0.23 16 32 H 0.06 1.30 7.77 -51.93 -0.40 0.89 16 33 H 0.12 1.53 5.94 -52.48 -0.31 1.22 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.12 1.77 6.29 -52.49 -0.33 1.44 16 38 H 0.13 2.41 5.48 -51.93 -0.28 2.12 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.19 6.09 -51.93 -0.32 0.88 16 41 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -28.54 316.55 -9.44 -37.98 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.92 Total: 5.06 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -3.08 Total: -29.78 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.12 Total: -37.88 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.54 -9.44 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186729956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.704 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds