Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47013 * 120.00547 * 2 1 3 5 5 H 1.07999 * 120.00349 * 34.19634 * 4 2 1 6 6 C 1.37878 * 119.99524 * 214.19908 * 4 2 1 7 7 N 1.31518 * 120.00210 * 354.17888 * 6 4 2 8 8 Si 1.86807 * 119.99806 * 174.17572 * 6 4 2 9 9 H 1.48503 * 109.47106 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47038 * 119.99996 * 8 6 4 11 11 H 1.48497 * 109.47023 * 239.99863 * 8 6 4 12 12 N 1.46902 * 109.46863 * 240.00119 * 2 1 3 13 13 C 1.46900 * 111.00225 * 306.04875 * 12 2 1 14 14 C 1.46905 * 110.99683 * 70.00295 * 12 2 1 15 15 C 1.53001 * 109.46948 * 162.04771 * 14 12 2 16 16 C 1.50700 * 115.55409 * 147.46348 * 15 14 12 17 17 C 1.38233 * 120.00410 * 149.05887 * 16 15 14 18 18 C 1.38231 * 119.99926 * 179.78775 * 17 16 15 19 19 C 1.38232 * 120.00247 * 0.44746 * 18 17 16 20 20 C 1.38231 * 119.99895 * 359.80583 * 19 18 17 21 21 C 1.38235 * 119.99636 * 329.33539 * 16 15 14 22 22 C 1.53000 * 117.50008 * 1.75414 * 15 14 12 23 23 C 1.52997 * 59.99985 * 252.51285 * 22 15 14 24 24 H 1.08996 * 109.47112 * 296.09972 * 1 2 3 25 25 H 1.09000 * 109.47562 * 56.09490 * 1 2 3 26 26 H 1.08996 * 109.47354 * 176.09776 * 1 2 3 27 27 H 0.96995 * 120.00099 * 4.81877 * 7 6 4 28 28 H 1.08995 * 109.47106 * 62.30433 * 13 12 2 29 29 H 1.08997 * 109.47077 * 182.30440 * 13 12 2 30 30 H 1.09001 * 109.46847 * 302.30024 * 13 12 2 31 31 H 1.08999 * 109.46809 * 282.04376 * 14 12 2 32 32 H 1.08993 * 109.47723 * 42.04507 * 14 12 2 33 33 H 1.08005 * 119.99611 * 0.02562 * 17 16 15 34 34 H 1.08010 * 119.99725 * 180.27450 * 18 17 16 35 35 H 1.08001 * 120.00240 * 179.83627 * 19 18 17 36 36 H 1.08004 * 120.00349 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00242 * 359.97438 * 21 16 15 38 38 H 1.09001 * 117.49648 * 0.02562 * 22 15 14 39 39 H 1.08997 * 117.50420 * 145.02137 * 22 15 14 40 40 H 1.09003 * 117.49815 * 252.50736 * 23 22 15 41 41 H 1.09000 * 117.52121 * 107.48095 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4829 -1.5493 1.6317 6 6 3.1932 -0.2897 1.8437 7 7 3.9227 0.6557 1.2925 8 14 3.7298 -1.0621 3.4577 9 1 2.7432 -2.0950 3.8643 10 1 5.0632 -1.6926 3.2856 11 1 3.8097 -0.0134 4.5060 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7528 0.0974 -2.4091 15 6 2.6397 -0.4032 -3.5509 16 6 2.0407 -0.3049 -4.9302 17 6 2.8583 -0.0999 -6.0259 18 6 2.3092 -0.0141 -7.2915 19 6 0.9417 -0.1242 -7.4606 20 6 0.1236 -0.3240 -6.3645 21 6 0.6731 -0.4141 -5.0992 22 6 3.5589 -1.5918 -3.2625 23 6 4.1488 -0.1889 -3.4192 24 1 -0.3633 0.4521 0.9228 25 1 -0.3634 0.5732 -0.8529 26 1 -0.3634 -1.0252 -0.0699 27 1 3.6096 1.1055 0.4923 28 1 0.3522 -1.9529 -1.4106 29 1 1.8445 -2.5412 -2.1819 30 1 1.6715 -2.6087 -0.4117 31 1 0.7049 -0.0098 -2.6891 32 1 1.9709 1.1471 -2.2130 33 1 3.9264 -0.0105 -5.8934 34 1 2.9485 0.1416 -8.1481 35 1 0.5124 -0.0545 -8.4492 36 1 -0.9449 -0.4104 -6.4965 37 1 0.0339 -0.5703 -4.2428 38 1 3.5314 -2.0175 -2.2594 39 1 3.7304 -2.3031 -4.0704 40 1 4.7085 0.0228 -4.3303 41 1 4.5099 0.3090 -2.5193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186729956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = 46.522062 kcal Electronic energy + Delta-G solvation = -19732.229908 eV Core-core repulsion = 16998.455679 eV Total energy + Delta-G solvation = -2733.774229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01985 -39.16897 -37.25554 -34.44326 -32.00060 -31.44428 -30.87486 -28.77085 -26.70308 -25.77664 -23.84319 -23.57330 -22.79644 -21.59488 -19.98691 -18.65433 -18.09627 -16.76302 -16.32436 -15.91302 -15.75110 -15.61674 -15.47011 -15.13996 -14.71790 -14.22111 -14.04551 -13.88079 -13.73811 -13.21058 -12.96071 -12.76612 -12.61176 -12.59097 -12.31372 -12.16167 -11.93538 -11.83084 -11.71272 -11.59829 -11.19717 -10.94761 -10.59012 -10.39951 -9.81697 -9.39980 -8.76422 -8.51703 -6.22747 0.43995 0.50661 1.55790 1.63950 1.79655 2.61026 2.70900 3.10105 3.15404 3.57606 3.73252 3.86215 4.00149 4.11655 4.17572 4.27336 4.31280 4.44493 4.48380 4.53307 4.60611 4.64242 4.69323 4.75613 4.82062 4.88643 4.90050 5.01037 5.08111 5.13779 5.17670 5.24128 5.26844 5.36509 5.44532 5.62767 5.62971 5.76381 5.96356 6.13455 6.27506 6.60485 6.64288 6.84390 7.60169 8.88283 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034641 B = 0.005133 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.103901 B = 5453.170213 C = 5866.791983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.188 3.812 3 H 0.014 0.986 4 C -0.587 4.587 5 H 0.040 0.960 6 C -0.018 4.018 7 N -0.930 5.930 8 Si 1.115 2.885 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.282 1.282 12 N -0.534 5.534 13 C 0.038 3.962 14 C 0.092 3.908 15 C -0.090 4.090 16 C -0.047 4.047 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.161 4.161 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -2.930 -16.273 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.082 3.918 3 H 0.032 0.968 4 C -0.626 4.626 5 H 0.058 0.942 6 C -0.218 4.218 7 N -0.567 5.567 8 Si 0.939 3.061 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.208 1.208 12 N -0.258 5.258 13 C -0.110 4.110 14 C -0.036 4.036 15 C -0.091 4.091 16 C -0.047 4.047 17 C -0.151 4.151 18 C -0.136 4.136 19 C -0.149 4.149 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.186 4.186 23 C -0.198 4.198 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.041 -2.977 -15.100 15.688 hybrid contribution -2.030 0.388 -0.782 2.210 sum -5.071 -2.589 -15.883 16.872 Atomic orbital electron populations 1.22283 0.99206 1.00478 0.99746 1.19405 0.89999 0.93737 0.88685 0.96763 1.22021 1.11850 1.17924 1.10776 0.94172 1.27040 0.93445 0.96281 1.05066 1.70801 1.38013 1.25358 1.22496 0.82951 0.75804 0.75394 0.71971 1.19948 1.21139 1.20775 1.62590 1.59111 1.02768 1.01341 1.22274 0.95838 0.91535 1.01318 1.21480 0.96141 0.96154 0.89805 1.20130 0.91602 1.05109 0.92238 1.19141 0.93851 0.99222 0.92507 1.21249 1.00359 1.01005 0.92493 1.21438 0.95900 0.99272 0.97025 1.21474 0.93727 1.00045 0.99623 1.21394 1.00960 0.99501 0.92070 1.21129 0.94465 1.01536 0.98103 1.23122 1.01580 0.90864 1.03070 1.22950 0.94126 1.00349 1.02386 0.93692 0.94242 0.93027 0.92903 0.96539 0.90974 0.93184 0.94451 0.93864 0.85294 0.83616 0.83471 0.84226 0.86892 0.88369 0.88184 0.87013 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.76 8.50 71.98 0.61 -6.15 16 2 C 0.19 9.38 2.14 44.17 0.09 9.47 16 3 H 0.01 0.80 6.17 -2.39 -0.01 0.79 16 4 C -0.59 -32.41 7.41 25.60 0.19 -32.22 16 5 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 6 C -0.02 -1.01 5.45 84.65 0.46 -0.55 16 7 N -0.93 -56.66 13.63 21.45 0.29 -56.36 16 8 Si 1.12 50.77 29.91 68.60 2.05 52.82 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 N -0.53 -23.71 3.70 -901.49 -3.33 -27.04 16 13 C 0.04 1.53 7.68 127.69 0.98 2.51 16 14 C 0.09 3.59 4.40 86.30 0.38 3.97 16 15 C -0.09 -3.02 2.38 -52.93 -0.13 -3.15 16 16 C -0.05 -1.35 5.48 -19.87 -0.11 -1.46 16 17 C -0.13 -3.28 9.37 22.27 0.21 -3.07 16 18 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 19 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 20 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 21 C -0.13 -3.64 9.25 22.27 0.21 -3.43 16 22 C -0.15 -4.99 8.02 30.59 0.25 -4.74 16 23 C -0.16 -5.44 9.58 30.59 0.29 -5.14 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.04 1.52 7.30 -2.39 -0.02 1.50 16 26 H 0.05 2.11 6.15 -2.39 -0.01 2.09 16 27 H 0.26 16.17 6.58 -92.71 -0.61 15.56 16 28 H 0.02 0.62 6.25 -2.39 -0.01 0.60 16 29 H 0.07 2.58 5.48 -2.39 -0.01 2.56 16 30 H 0.05 2.18 7.16 -2.39 -0.02 2.16 16 31 H 0.04 1.37 5.20 -2.39 -0.01 1.36 16 32 H 0.04 1.83 7.77 -2.39 -0.02 1.81 16 33 H 0.13 2.91 5.94 -2.91 -0.02 2.89 16 34 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.11 3.16 6.29 -2.91 -0.02 3.15 16 38 H 0.10 3.85 5.48 -2.39 -0.01 3.83 16 39 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.11 3.08 6.09 -2.39 -0.01 3.06 16 41 H 0.07 2.85 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -63.01 316.55 4.29 -58.72 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 1.17 Total: 22.62 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 4.11 Total: -50.75 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.04 Total: -83.40 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -63.01 4.29 -58.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186729956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.240 kcal (2) G-P(sol) polarization free energy of solvation -63.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds