Wall clock time and date at job start Mon Mar 30 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47677 * 2 1 4 4 C 1.50694 * 109.47346 * 239.99332 * 2 1 3 5 5 H 1.08002 * 120.00232 * 240.00274 * 4 2 1 6 6 C 1.37879 * 119.99931 * 60.00485 * 4 2 1 7 7 N 1.31515 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00008 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47186 * 60.00017 * 8 6 4 10 10 H 1.48507 * 109.46783 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47258 * 299.99420 * 8 6 4 12 12 N 1.46905 * 109.47192 * 119.99689 * 2 1 3 13 13 C 1.46895 * 111.00287 * 176.04713 * 12 2 1 14 14 C 1.46899 * 110.99944 * 300.00328 * 12 2 1 15 15 C 1.52998 * 109.47390 * 168.35898 * 14 12 2 16 16 C 1.50691 * 115.56326 * 320.11597 * 15 14 12 17 17 C 1.38234 * 119.99880 * 328.40881 * 16 15 14 18 18 C 1.38238 * 119.99988 * 179.78420 * 17 16 15 19 19 C 1.38230 * 119.99856 * 0.44477 * 18 17 16 20 20 C 1.38238 * 120.00214 * 359.80454 * 19 18 17 21 21 C 1.38232 * 120.00275 * 148.67510 * 16 15 14 22 22 C 1.52997 * 117.49775 * 174.42528 * 15 14 12 23 23 C 1.52994 * 60.03391 * 252.52139 * 22 15 14 24 24 H 1.08996 * 109.46607 * 60.00601 * 1 2 3 25 25 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47098 * 300.00514 * 1 2 3 27 27 H 0.96998 * 120.00342 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46822 * 183.95619 * 13 12 2 29 29 H 1.08996 * 109.47016 * 303.95095 * 13 12 2 30 30 H 1.08997 * 109.47303 * 63.95445 * 13 12 2 31 31 H 1.09001 * 109.47750 * 48.35563 * 14 12 2 32 32 H 1.09004 * 109.47091 * 288.36160 * 14 12 2 33 33 H 1.08000 * 120.00219 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00093 * 180.27306 * 18 17 16 35 35 H 1.08002 * 120.00225 * 179.83368 * 19 18 17 36 36 H 1.07996 * 119.99930 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.99941 * 359.97438 * 21 16 15 38 38 H 1.09002 * 117.49575 * 145.02141 * 22 15 14 39 39 H 1.09001 * 117.50440 * 0.02562 * 22 15 14 40 40 H 1.09004 * 117.49820 * 107.47948 * 23 22 15 41 41 H 1.09001 * 117.50360 * 252.47128 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8262 -0.4209 -5.2204 11 1 3.8065 -1.1213 -4.0080 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1872 14 6 1.5486 -0.0263 2.4211 15 6 1.8258 -0.9223 3.6299 16 6 1.5837 -2.3944 3.4173 17 6 0.5955 -2.8136 2.5463 18 6 0.3764 -4.1640 2.3479 19 6 1.1392 -5.0951 3.0275 20 6 2.1240 -4.6759 3.9024 21 6 2.3460 -3.3255 4.0974 22 6 1.5260 -0.3501 5.0168 23 6 2.9754 -0.5215 4.5578 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7090 1.1611 -3.4844 28 1 3.8163 -1.3721 2.0502 29 1 3.8070 -1.2916 0.2721 30 1 3.9192 0.2044 1.2301 31 1 0.4772 0.1587 2.3441 32 1 2.0730 0.9214 2.5434 33 1 -0.0033 -2.0861 2.0185 34 1 -0.3927 -4.4915 1.6641 35 1 0.9663 -6.1501 2.8745 36 1 2.7203 -5.4034 4.4330 37 1 3.1155 -2.9980 4.7809 38 1 1.1536 -1.0385 5.7755 39 1 1.1309 0.6645 5.0682 40 1 3.5338 0.3803 4.3067 41 1 3.5567 -1.3224 5.0148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186729972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:54 Heat of formation + Delta-G solvation = 60.274181 kcal Electronic energy + Delta-G solvation = -19973.338604 eV Core-core repulsion = 17240.160712 eV Total energy + Delta-G solvation = -2733.177892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65073 -37.31665 -35.84990 -32.60221 -30.52406 -30.12460 -29.13329 -27.40721 -24.74125 -23.50609 -22.56005 -22.46745 -21.56595 -19.63911 -18.81154 -16.70551 -16.24131 -15.22340 -14.98042 -14.70414 -14.35957 -13.97971 -13.80377 -13.41679 -12.89541 -12.83004 -12.43005 -12.36814 -11.94053 -11.60400 -11.41484 -11.14929 -11.02624 -10.94766 -10.74795 -10.62642 -10.54146 -10.25678 -10.08124 -9.96921 -9.83267 -9.49548 -8.83628 -8.46211 -8.39553 -8.09372 -7.07742 -5.98961 -4.02755 1.76334 1.88341 3.33410 3.37516 3.40912 3.89590 4.38635 4.43373 4.78622 4.88680 5.09285 5.20416 5.31822 5.33674 5.40385 5.49583 5.68009 5.74587 5.85329 5.98946 6.07210 6.12059 6.16679 6.25405 6.29094 6.34321 6.47671 6.51021 6.53199 6.85046 6.86205 6.87912 6.99170 7.06128 7.17504 7.19075 7.45662 7.55054 7.76492 7.86010 8.24327 8.36575 8.65091 9.04149 9.62124 11.07897 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.006585 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.089629 B = 4250.953720 C = 4872.281161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.005 1.005 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.526 5.526 13 C 0.041 3.959 14 C 0.086 3.914 15 C -0.073 4.073 16 C -0.020 4.020 17 C -0.066 4.066 18 C -0.123 4.123 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.169 4.169 23 C -0.177 4.177 24 H 0.085 0.915 25 H 0.034 0.966 26 H 0.008 0.992 27 H 0.260 0.740 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.005 0.995 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 -5.490 13.403 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.250 5.250 13 C -0.107 4.107 14 C -0.042 4.042 15 C -0.074 4.074 16 C -0.020 4.020 17 C -0.084 4.084 18 C -0.141 4.141 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.206 4.206 23 C -0.214 4.214 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.024 0.976 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.501 -5.838 13.226 14.466 hybrid contribution 0.768 0.409 -0.959 1.295 sum 1.270 -5.430 12.267 13.475 Atomic orbital electron populations 1.21878 0.97888 0.99542 0.99840 1.19222 0.92167 0.91909 0.86062 0.98700 1.21114 1.30845 1.12157 0.89726 0.91937 1.24916 0.95266 0.95080 0.98943 1.69879 1.37025 1.23090 1.23424 0.86616 0.79073 0.79803 0.82233 1.20251 1.21408 1.20416 1.62088 1.09307 1.52055 1.01570 1.22165 0.88785 0.98362 1.01403 1.21637 1.00803 0.92738 0.89064 1.20323 1.02814 0.92751 0.91481 1.18765 0.95278 0.91854 0.96090 1.21026 0.96714 0.95423 0.95270 1.21123 1.00032 0.93415 0.99532 1.21008 0.97005 0.98965 0.97942 1.20908 0.98825 0.95407 0.99751 1.20943 0.99991 0.92961 1.00836 1.23039 0.98769 1.01960 0.96862 1.23152 0.91237 1.03007 1.03980 0.89685 0.94656 0.97347 0.93007 0.93678 0.90860 0.97603 0.90317 0.95739 0.85359 0.86562 0.87028 0.87046 0.86887 0.88931 0.88772 0.88887 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.77 37.16 0.33 -2.86 16 2 C 0.21 5.29 2.06 -68.86 -0.14 5.15 16 3 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 4 C -0.50 -13.61 7.88 -34.44 -0.27 -13.88 16 5 H 0.06 1.72 6.41 -52.49 -0.34 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 N -0.53 -11.08 2.99 -236.29 -0.71 -11.79 16 13 C 0.04 0.84 9.05 60.06 0.54 1.39 16 14 C 0.09 1.56 4.07 -3.83 -0.02 1.54 16 15 C -0.07 -1.12 1.42 -155.63 -0.22 -1.34 16 16 C -0.02 -0.32 4.78 -104.63 -0.50 -0.82 16 17 C -0.07 -1.13 8.56 -39.58 -0.34 -1.47 16 18 C -0.12 -1.92 10.05 -39.58 -0.40 -2.31 16 19 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 20 C -0.13 -1.79 10.05 -39.58 -0.40 -2.18 16 21 C -0.13 -1.87 9.37 -39.59 -0.37 -2.24 16 22 C -0.17 -2.12 9.93 -26.74 -0.27 -2.38 16 23 C -0.18 -2.30 9.17 -26.70 -0.24 -2.54 16 24 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 25 H 0.03 0.82 7.79 -51.93 -0.40 0.42 16 26 H 0.01 0.17 6.17 -51.93 -0.32 -0.15 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.83 6.83 -51.93 -0.35 0.47 16 29 H 0.07 1.61 6.10 -51.93 -0.32 1.29 16 30 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.08 1.45 5.65 -51.93 -0.29 1.15 16 32 H 0.02 0.45 7.91 -51.93 -0.41 0.04 16 33 H 0.13 2.36 6.77 -52.49 -0.36 2.00 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.11 1.43 5.94 -52.48 -0.31 1.12 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 41 H 0.09 1.11 6.10 -51.93 -0.32 0.79 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -28.22 320.53 -9.31 -37.53 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.25 Total: 2.49 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -2.79 Total: -24.66 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.08 Total: -36.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.22 -9.31 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186729972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.800 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds