Wall clock time and date at job start Mon Mar 30 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47677 * 2 1 4 4 C 1.50694 * 109.47346 * 239.99332 * 2 1 3 5 5 H 1.08002 * 120.00232 * 240.00274 * 4 2 1 6 6 C 1.37879 * 119.99931 * 60.00485 * 4 2 1 7 7 N 1.31515 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00008 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47186 * 60.00017 * 8 6 4 10 10 H 1.48507 * 109.46783 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47258 * 299.99420 * 8 6 4 12 12 N 1.46905 * 109.47192 * 119.99689 * 2 1 3 13 13 C 1.46895 * 111.00287 * 176.04713 * 12 2 1 14 14 C 1.46899 * 110.99944 * 300.00328 * 12 2 1 15 15 C 1.52998 * 109.47390 * 168.35898 * 14 12 2 16 16 C 1.50691 * 115.56326 * 320.11597 * 15 14 12 17 17 C 1.38234 * 119.99880 * 328.40881 * 16 15 14 18 18 C 1.38238 * 119.99988 * 179.78420 * 17 16 15 19 19 C 1.38230 * 119.99856 * 0.44477 * 18 17 16 20 20 C 1.38238 * 120.00214 * 359.80454 * 19 18 17 21 21 C 1.38232 * 120.00275 * 148.67510 * 16 15 14 22 22 C 1.52997 * 117.49775 * 174.42528 * 15 14 12 23 23 C 1.52994 * 60.03391 * 252.52139 * 22 15 14 24 24 H 1.08996 * 109.46607 * 60.00601 * 1 2 3 25 25 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47098 * 300.00514 * 1 2 3 27 27 H 0.96998 * 120.00342 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46822 * 183.95619 * 13 12 2 29 29 H 1.08996 * 109.47016 * 303.95095 * 13 12 2 30 30 H 1.08997 * 109.47303 * 63.95445 * 13 12 2 31 31 H 1.09001 * 109.47750 * 48.35563 * 14 12 2 32 32 H 1.09004 * 109.47091 * 288.36160 * 14 12 2 33 33 H 1.08000 * 120.00219 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00093 * 180.27306 * 18 17 16 35 35 H 1.08002 * 120.00225 * 179.83368 * 19 18 17 36 36 H 1.07996 * 119.99930 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.99941 * 359.97438 * 21 16 15 38 38 H 1.09002 * 117.49575 * 145.02141 * 22 15 14 39 39 H 1.09001 * 117.50440 * 0.02562 * 22 15 14 40 40 H 1.09004 * 117.49820 * 107.47948 * 23 22 15 41 41 H 1.09001 * 117.50360 * 252.47128 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8262 -0.4209 -5.2204 11 1 3.8065 -1.1213 -4.0080 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1872 14 6 1.5486 -0.0263 2.4211 15 6 1.8258 -0.9223 3.6299 16 6 1.5837 -2.3944 3.4173 17 6 0.5955 -2.8136 2.5463 18 6 0.3764 -4.1640 2.3479 19 6 1.1392 -5.0951 3.0275 20 6 2.1240 -4.6759 3.9024 21 6 2.3460 -3.3255 4.0974 22 6 1.5260 -0.3501 5.0168 23 6 2.9754 -0.5215 4.5578 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7090 1.1611 -3.4844 28 1 3.8163 -1.3721 2.0502 29 1 3.8070 -1.2916 0.2721 30 1 3.9192 0.2044 1.2301 31 1 0.4772 0.1587 2.3441 32 1 2.0730 0.9214 2.5434 33 1 -0.0033 -2.0861 2.0185 34 1 -0.3927 -4.4915 1.6641 35 1 0.9663 -6.1501 2.8745 36 1 2.7203 -5.4034 4.4330 37 1 3.1155 -2.9980 4.7809 38 1 1.1536 -1.0385 5.7755 39 1 1.1309 0.6645 5.0682 40 1 3.5338 0.3803 4.3067 41 1 3.5567 -1.3224 5.0148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186729972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:54 Heat of formation + Delta-G solvation = 47.060905 kcal Electronic energy + Delta-G solvation = -19973.911575 eV Core-core repulsion = 17240.160712 eV Total energy + Delta-G solvation = -2733.750863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84680 -38.70191 -37.31875 -34.60006 -31.67529 -31.25069 -31.05235 -29.01026 -26.71345 -25.12660 -23.75488 -23.60714 -22.67046 -21.45743 -20.07079 -18.31437 -17.84425 -17.05034 -16.20958 -15.94552 -15.92225 -15.43208 -15.16026 -14.95743 -14.42312 -14.14981 -14.05035 -13.69209 -13.51230 -12.96103 -12.90786 -12.87562 -12.64551 -12.62365 -12.30583 -12.13258 -11.97917 -11.95219 -11.75940 -11.56798 -11.27650 -10.89009 -10.70958 -10.48929 -9.60894 -9.22696 -8.81866 -8.10676 -6.21561 0.64356 0.74247 1.40852 1.42447 1.49912 2.41665 2.80404 3.17250 3.24768 3.38444 3.75866 3.97381 4.01273 4.19810 4.32686 4.39164 4.44273 4.59403 4.65842 4.70384 4.75606 4.79934 4.83025 4.91450 4.99113 5.03775 5.05088 5.11937 5.13531 5.27650 5.28467 5.35902 5.38375 5.52162 5.73787 5.75771 5.82212 5.84597 6.01228 6.27882 6.33500 6.43790 6.79350 6.93816 7.47367 8.95130 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.006585 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.089629 B = 4250.953720 C = 4872.281161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.218 3.782 3 H -0.043 1.043 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.524 5.524 13 C 0.049 3.951 14 C 0.090 3.910 15 C -0.097 4.097 16 C -0.029 4.029 17 C -0.094 4.094 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.150 4.150 23 C -0.165 4.165 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -7.008 15.092 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 H -0.025 1.025 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.248 5.248 13 C -0.099 4.099 14 C -0.038 4.038 15 C -0.097 4.097 16 C -0.029 4.029 17 C -0.112 4.112 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.188 4.188 23 C -0.201 4.201 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.020 0.980 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.621 -7.360 14.933 16.727 hybrid contribution 0.412 0.882 -1.421 1.722 sum 2.033 -6.478 13.512 15.123 Atomic orbital electron populations 1.21658 0.97345 0.99140 0.99525 1.19005 0.92543 0.89888 0.87433 1.02516 1.21368 1.30865 1.12062 0.90966 0.92562 1.25667 0.95449 0.95760 1.01747 1.70008 1.37850 1.24218 1.23997 0.85650 0.78681 0.78726 0.78802 1.19835 1.20907 1.19822 1.62023 1.09737 1.51682 1.01367 1.22083 0.88278 0.98212 1.01329 1.21604 0.99941 0.93194 0.89051 1.20160 1.06056 0.92132 0.91357 1.18863 0.95290 0.92460 0.96281 1.20959 0.97848 0.95694 0.96730 1.21294 1.00796 0.93350 1.00208 1.21315 0.96600 0.99908 0.97445 1.21312 0.98400 0.95817 0.99067 1.21207 1.00001 0.93083 1.00845 1.23120 0.98428 1.02405 0.94807 1.23239 0.91304 1.03368 1.02212 0.92302 0.94951 0.95252 0.93001 0.91298 0.92942 0.97990 0.91337 0.96132 0.87923 0.86281 0.84601 0.83984 0.84716 0.87498 0.88056 0.88847 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.77 71.98 0.63 -5.24 16 2 C 0.22 11.26 2.06 44.17 0.09 11.35 16 3 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 4 C -0.51 -28.71 7.88 25.60 0.20 -28.51 16 5 H 0.06 3.15 6.41 -2.91 -0.02 3.14 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.67 11.32 21.45 0.24 -53.42 16 8 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 N -0.52 -22.47 2.99 -901.48 -2.70 -25.17 16 13 C 0.05 2.01 9.05 127.69 1.16 3.17 16 14 C 0.09 3.27 4.07 86.30 0.35 3.63 16 15 C -0.10 -2.80 1.42 -52.91 -0.07 -2.88 16 16 C -0.03 -0.88 4.78 -19.87 -0.09 -0.98 16 17 C -0.09 -3.22 8.56 22.27 0.19 -3.03 16 18 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 19 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 20 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 21 C -0.13 -3.45 9.37 22.27 0.21 -3.24 16 22 C -0.15 -3.37 9.93 30.59 0.30 -3.07 16 23 C -0.16 -3.78 9.17 30.62 0.28 -3.50 16 24 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 25 H 0.03 1.57 7.79 -2.39 -0.02 1.55 16 26 H 0.03 1.28 6.17 -2.39 -0.01 1.26 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.07 2.44 6.83 -2.39 -0.02 2.43 16 29 H 0.05 2.33 6.10 -2.39 -0.01 2.31 16 30 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.07 2.57 5.65 -2.39 -0.01 2.56 16 32 H 0.02 0.75 7.91 -2.39 -0.02 0.74 16 33 H 0.10 3.95 6.77 -2.91 -0.02 3.93 16 34 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.14 2.82 5.94 -2.91 -0.02 2.81 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.09 2.16 8.08 -2.39 -0.02 2.14 16 41 H 0.11 2.17 6.10 -2.39 -0.01 2.16 16 Total: -1.00 -61.61 320.53 4.94 -56.67 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.00 Total: 16.74 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 4.36 Total: -41.29 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -2.45 Total: -78.59 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.61 4.94 -56.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186729972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.736 kcal (2) G-P(sol) polarization free energy of solvation -61.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds